cluster # 7540

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Oryza sativa
cluster # 7540 cluster # 7540 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7540#0 length = 633 sequences # 3

consensus_7540#1 length = 236 sequences # 1

consensusID : consensus_7540#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 633
fasta sequence

                              [CACAGCTCTCATCTCGCAGCCAAAACCACTTTACTATCTCGCAGCCAACCTGTAGCAAAAGCTAATCAAACTAGCTATCAATCATGAGCTC---CGGCGGCGTCTGCGGCGGCGGCGATCGTGGACCTGGCGCACAACGGCGACCTGCGGGCGAACTGGGTGGCCATATGCATGCAGTTCCACGGCTTCTGCCAGCGAACCAGCGGATCCGTCGTTGCCTCCTTCCTCACCGTCGTCATCCTCATGTTCCTCGTCATCTTGGCCGCCTGCTCTATCCGCAAGCGCTAGCTTAATCATCTTGCTAGCTAATTAAAAAAGATTGTGCTTAATTATACATGCATATAATATTTACGTTTGATTTCTATCTGCATGCGCGAGCGAGTGCGTTTTTATTTTCGAATTGTAATCCTCTTCTGTACTACATGCATTTCTTTACTTGTGAGCATTGGCATTGGCGAGTGATCGAGCAGTAGTGCATTGTAAAAGTTCACCTGTGCATCTATCGTTTCACTTTCTTTCTTTCTTGTAAAAGATCAACGTTGTGTGATCATCGTGCTCTGTAATCTGAATTGAACAGCTTGTTTAAAACAACCCTTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF291280             [CACAGCTCTCATCTCGCAGCCAAAACCACTTTACTATCTCGCAGCCAACCTGTAGCAAAAGCTAATCAAACTAGCTATCAATCATGAGCTC   CGGCGGCGTCTGCGGCGGCGGCGATCGTGGACCTGGCGCACAACGGCGACCTGCGGGCGAACTGGGTGGCCATATGCATGCAGTTCCACGGCTTCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK105205             [      TCTCATCTCGCAGCCAAAACCACTTTACTATCTCGCAGCCAACCTGTAGCAAAAGCTAATCAAACTAGCTATCAATCATGAGCTCCGGCGGCGGCGTCTGCGGCGGCGGCGATCGTGGACCTGGCGCACAACGGCAACCTGCGGGCGAACTGGGTGGCCATATGCATGCAGTTCCACGGCTTCTGCCAGCGAACCAGCGGATCCGTCGTTGCCTCCTTCCTCACCGTCGTCATCCTCATGTTCCTCGTCATCTTGGCCGCCTGCTCTATCCGCAAGCGCTAGCTTAATCATCTTGCTAGCTAATTAAAAAAGATTGTGCTTAATTATACATGCATATAATATTTACGTTTGATTTCTATCTGCATGCGCGAGCGAGTGCGTTTTTATTTTCGAATTGTAATCCTCTTCTGTACTACATGCATTTCTTTACTTGTGAGCATTGGCATTGGCGAGTGATCGAGCAGTAGTGCATTGTAAAAGTTCACCTGTGCATCTATCGTTTCACTTTCTTTCTTTCTTGTAAAAGATCAACGTTGTGTGATCATCGTGCTCTGTAATCTGAATTGAACAGCT                                                         ]
[-] EMBL CF291281             [                                                                                                                                                                                                                                                                                                                                                                GTTTGATTTCTATCTGCATGCGCGAGCGAGTGCGTTTTTATTTTCGAATTGTAATCCTTTTTTGTACTACATGCATTTTTTTACTTGTGAGCATTGGCATTGGCGAGTGATCGACCAGTAGTGCATTGTAAAAGTTCCCCTGGGCATCTATCGTTTCCCTTTCTTTTTTTTTTGTAAAAGATCAACGTTGGGTGATCATCGGGCTCTGTAATTTGAATTGAACAGCTTGTTTAAAACAACCCTTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7540#0
CACAGCTCTCATCTCGCAGCCAAAACCACTTTACTATCTCGCAGCCAACCTGTAGCAAAA
GCTAATCAAACTAGCTATCAATCATGAGCTCCGGCGGCGTCTGCGGCGGCGGCGATCGTG
GACCTGGCGCACAACGGCGACCTGCGGGCGAACTGGGTGGCCATATGCATGCAGTTCCAC
GGCTTCTGCCAGCGAACCAGCGGATCCGTCGTTGCCTCCTTCCTCACCGTCGTCATCCTC
ATGTTCCTCGTCATCTTGGCCGCCTGCTCTATCCGCAAGCGCTAGCTTAATCATCTTGCT
AGCTAATTAAAAAAGATTGTGCTTAATTATACATGCATATAATATTTACGTTTGATTTCT
ATCTGCATGCGCGAGCGAGTGCGTTTTTATTTTCGAATTGTAATCCTCTTCTGTACTACA
TGCATTTCTTTACTTGTGAGCATTGGCATTGGCGAGTGATCGAGCAGTAGTGCATTGTAA
AAGTTCACCTGTGCATCTATCGTTTCACTTTCTTTCTTTCTTGTAAAAGATCAACGTTGT
GTGATCATCGTGCTCTGTAATCTGAATTGAACAGCTTGTTTAAAACAACCCTTTTGTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_7540#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [CGCAGCCAAAACCACTTTACTATCTCGCAGCCAACCTGTAGCAAAAGCTAATCAAACTAGCTATCAATCATGAGCTCCGGCGAGCCTGCCGCCGTCAGCATCCCCATCCACGACCACCATGGCAAGGCCCCGGCCACCTCCTCCGCCGTCCCTGCTGCTGCTGCTGCTGCGCCCGCCGCGGCTCCCGCGGTGGCGCCACGCAAGGTCGGCATCCCGTTCTTCCGGCGCGGCGACCA]

[+] EMBL CA757224             [CGCAGCCAAAACCACTTTACTATCTCGCAGCCAACCTGTAGCAAAAGCTAATCAAACTAGCTATCAATCATGAGCTCCGGCGAGCCTGCCGCCGTCAGCATCCCCATCCACGACCACCATGGCAAGGCCCCGGCCACCTCCTCCGCCGTCCCTGCTGCTGCTGCTGCTGCGCCCGCCGCGGCTCCCGCGGTGGCGCCACGCAAGGTCGGCATCCCGTTCTTCCGGCGCGGCGACCA]




>consensus_7540#1
CGCAGCCAAAACCACTTTACTATCTCGCAGCCAACCTGTAGCAAAAGCTAATCAAACTAG
CTATCAATCATGAGCTCCGGCGAGCCTGCCGCCGTCAGCATCCCCATCCACGACCACCAT
GGCAAGGCCCCGGCCACCTCCTCCGCCGTCCCTGCTGCTGCTGCTGCTGCGCCCGCCGCG
GCTCCCGCGGTGGCGCCACGCAAGGTCGGCATCCCGTTCTTCCGGCGCGGCGACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7540#0      CACAGCTCTCATCTCGCAGCCAAAACCACTTTACTATCTCGCAGCCAACCTGTAGCAAAA 60
consensus_7540#1      --------------CGCAGCCAAAACCACTTTACTATCTCGCAGCCAACCTGTAGCAAAA 46
                                    **********************************************

consensus_7540#0      GCTAATCAAACTAGCTATCAATCATGAGCTCCGGCGGCGTCTGCGGCGGCGGCGATCGTG 120
consensus_7540#1      GCTAATCAAACTAGCTATCAATCATGAGCTCCGGCGA-GCCTGCCGCCGTCAGCATCCCC 105
                      ************************************  * **** ** *     ***   

consensus_7540#0      GACCTGGCGCACAACGGCGACCTGCGGGCGAACTGGGTGGCCATATGCATGCAGTTCCAC 180
consensus_7540#1      ATCCACGACCACCATGGCAAGGCCCCGGCCACCTCCTCCGCCGTC--CCTGCTG--CTGC 161
                        **  *  *** * *** *    * *** * **     *** *   * *** *  *  *

consensus_7540#0      GGCTTCTGCCAGCGAACCAGCGGATCCGTCGTTGCCTCCTTCCTCACCGTCGTCATCCTC 240
consensus_7540#1      TGCTGCTGCGCCCG---CCGCGGCTCCCGCGGTGGCGCCA--CGCAAGGTCGGCATCCCG 216
                       *** ****   **   * **** ***  ** ** * **   * **  **** *****  

consensus_7540#0      ATGTTCCTCGTCATCTTGGCCGCCTGCTCTATCCGCAAGCGCTAGCTTAATCATCTTGCT 300
consensus_7540#1      TTCTTC--CGGCGCGGCGACCA-------------------------------------- 236
                       * ***  ** *     * **                                       

consensus_7540#0      AGCTAATTAAAAAAGATTGTGCTTAATTATACATGCATATAATATTTACGTTTGATTTCT 360
consensus_7540#1      ------------------------------------------------------------
                                                                                  

consensus_7540#0      ATCTGCATGCGCGAGCGAGTGCGTTTTTATTTTCGAATTGTAATCCTCTTCTGTACTACA 420
consensus_7540#1      ------------------------------------------------------------
                                                                                  

consensus_7540#0      TGCATTTCTTTACTTGTGAGCATTGGCATTGGCGAGTGATCGAGCAGTAGTGCATTGTAA 480
consensus_7540#1      ------------------------------------------------------------
                                                                                  

consensus_7540#0      AAGTTCACCTGTGCATCTATCGTTTCACTTTCTTTCTTTCTTGTAAAAGATCAACGTTGT 540
consensus_7540#1      ------------------------------------------------------------
                                                                                  

consensus_7540#0      GTGATCATCGTGCTCTGTAATCTGAATTGAACAGCTTGTTTAAAACAACCCTTTTGTTAA 600
consensus_7540#1      ------------------------------------------------------------
                                                                                  

consensus_7540#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 633
consensus_7540#1      ---------------------------------