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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7543#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 925 fasta sequence
[ATCAAAGACAACGTCAAGATGAGCAAGATCCAGGTGTCCAGCGTGCGTAACACCCTCAAGGAGCTGATCCAGGCTTCGGAGGACAAGCGCCGAAACTTCAACGAGACCGTCGAGCTCCAGATCGGCCTCAAGAACTACGACCCCCAGCGCGACAAGCGTTTCTCGGGTACCGTCAAGCTTCCCCATGTGCCCCGTCCCCGCATGAGCATGTGCATTCTGGCCGACGCCGCCGATGTCGACCGTGCCAAGCTCATCAACCTCGAGTTCATGACCGTCGAGGACTTGAAGAAGCTCAACAAGAACAAGAAGCTCGTCAAGAAGCTCGCCAAGAAGTACGACGCCTTCCTGGCCTCCGAGGCTCTGATCAAGCAGATCCCTCGTCTGTTGGGCCCCGGTCTCTCCAAGGCCGGCAAGTTCCCCACCCCCGTCTCGCACAACGAGGACCTCGAGAAGAAGGTCACCGAGGTCAAGAGCACCATCAAGTTCCAGCTCAAGAAGGTTCTCTGCCTCGGTGTCGCCGTCGGCCACGTCCAGATGACCGACGACCAGCTGCTGGCCAACGTCATGCTTGCCATCAACTTCCTCATCTCGCTCCTCAAGAAGCAGTGGCAGAACATCAAGTCGCTCCACGTCAAGTCGACCATGGGCAAGGTCTACCGCCTCTTCTAAGCGGTTGTTCGCCATGTCTCTTTCGACTAGCTTGGAGGGCTTTCGATGAATTCTGTTTCGGTCACTTGCATCCCACAAGGCATTTACGCACGCTTACACCCAGTTCCATTCGATGCCTCGGCTCGCGTCCGAGGAAGCGACTTGGGATGAGGGGAGCTAATCTTGTGACCTTACTCATCCCCCCCACCCTAAAATACAAAATTGCCGTTGGAGGCGCACGCCGTCGTTCGCATTAGAGCGGCGGGTTGTGTCCTCT]
[+] EMBL AK119934 [ATCAAAGACAACGTCAAGATGAGCAAGATCCAGGTGTCCAGCGTGCGTAACACCCTCAAGGAGCTGATCCAGGCTTCGGAGGACAAGCGCCGAAACTTCAACGAGACCGTCGAGCTCCAGATCGGCCTCAAGAACTACGACCCCCAGCGCGACAAGCGTTTCTCGGGTACCGTCAAGCTTCCCCATGTGCCCCGTCCCCGCATGAGCATGTGCATTCTGGCCGACGCCGCCGATGTCGACCGTGCCAAGCTCATCAACCTCGAGTTCATGACCGTCGAGGACTTGAAGAAGCTCAACAAGAACAAGAAGCTCGTCAAGAAGCTCGCCAAGAAGTACGACGCCTTCCTGGCCTCCGAGGCTCTGATCAAGCAGATCCCTCGTCTGTTGGGCCCCGGTCTCTCCAAGGCCGGCAAGTTCCCCACCCCCGTCTCGCACAACGAGGACCTCGAGAAGAAGGTCACCGAGGTCAAGAGCACCATCAAGTTCCAGCTCAAGAAGGTTCTCTGCCTCGGTGTCGCCGTCGGCCACGTCCAGATGACCGACGACCAGCTGCTGGCCAACGTCATGCTTGCCATCAACTTCCTCATCTCGCTCCTCAAGAAGCAGTGGCAGAACATCAAGTCGCTCCACGTCAAGTCGACCATGGGCAAGGTCTACCGCCTCTTCTAAGCGGTTGTTCGCCATGTCTCTTTCGACTAGCTTGGAGGGCTTTCGATGAATTCTGTTTCGGTCACTTGCATCCCACAAGGCATTTACGCACGCTTACACCCAGTTCCATTCGATGCCTCGGCTCGCGTCCGAGGAAGCGACTTGGGATGAGGGGAGCTAATCTTGTGACCTTACTCATCCCCCCCACCCTAAAATACAAAATTGCCGTTGGAGGCGCACGCCGTCGTTCGCATTAGAGCGGCGGGTTGTGTCCTCT]
consensusID : consensus_7543#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 792 fasta sequence
[GTTCTGACCCCATTAGATTATACGCCTATCTATTGGGAGACTGCCAAAATGTCGAAAATACAGTCGCTAATGTCCGAACTCAGTGCGGAGAGCTCCTTGAGTACTCCAACGAGACCAAGAAGCGAAACTTCCTTGAGACCGTTGAGCTTCAGATCGGCCTGAAGAACTATGACCCTCAGCGTGACAAGCGTTTCAGCGGCACCATTCGCCTGCCCAGCGTCCCTCGCCCCAACATGTCCATCTGCATTCTCGGTGATGCCCACGATCTCGACCGAGCCAAGCACGGTGGTGTTGATGCCATGTCCGCCGATGACTTGAAGAAGCTCAACAAGAACAAGAAGCTCATCAAGAAGCTTGCTCGCAAGTACGATGCCTTCATTGCTTCCGAGGCTCTTATCAAGCAGATCCCTCGTCTCTTGGGTCCTGGTCTTTCCAAGGCCGGAAAGTTCCCTACCCCCGTTTCTCACGCCGATGATCTCTCAGGCCGTATCAACGAGGTTAAGTCTACCATCAAGTTCCAGCTCAAGAAGGTTCTCTGCATGGGTGTCGCCGTCGGCAACGTTGAGATGACTACCGAGCAACTCGTCGCTAACGTCATGTTGGCCATCAACTACCTTGTCTCTCTTCTCAAGAAGGGCTGGCAGAACGTTTGGAAGTCTTACCATCAAGGCTTCCATGTCTNCCCCCCGTCGTCTCTACTAGATGTGGNTATTTGGGTTTCTGTCTGAGAGGATTCGACAAATCGGTCCGCTTAAATGGGGGACGGGTTCAACTTGGGCTAGGCAGACCTGA]
[+] EMBL CA767535 [GTTCTGACCCCATTAGATTATACGCCTATCTATTGGGAGACTGCCAAAATGTCGAAAATACAGTCGCTAATGTCCGAACTCAGTGCGGAGAGCTCCTTGAGTACTCCAACGAGACCAAGAAGCGAAACTTCCTTGAGACCGTTGAGCTTCAGATCGGCCTGAAGAACTATGACCCTCAGCGTGACAAGCGTTTCAGCGGCACCATTCGCCTGCCCAGCGTCCCTCGCCCCAACATGTCCATCTGCATTCTCGGTGATGCCCACGATCTCGACCGAGCCAAGCACGGTGGTGTTGATGCCATGTCCGCCGATGACTTGAAGAAGCTCAACAAGAACAAGAAGCTCATCAAGAAGCTTGCTCGCAAGTACGATGCCTTCATTGCTTCCGAGGCTCTTATCAAGCAGATCCCTCGTCTCTTGGGTCCTGGTCTTTCCAAGGCCGGAAAGTTCCCTACCCCCGTTTCTCACGCCGATGATCTCTCAGGCCGTATCAACGAGGTTAAGTCTACCATCAAGTTCCAGCTCAAGAAGGTTCTCTGCATGGGTGTCGCCGTCGGCAACGTTGAGATGACTACCGAGCAACTCGTCGCTAACGTCATGTTGGCCATCAACTACCTTGTCTCTCTTCTCAAGAAGGGCTGGCAGAACGTTTGGAAGTCTTACCATCAAGGCTTCCATGTCTNCCCCCCGTCGTCTCTACTAGATGTGGNTATTTGGGTTTCTGTCTGAGAGGATTCGACAAATCGGTCCGCTTAAATGGGGGACGGGTTCAACTTGGGCTAGGCAGACCTGA]
consensusID : consensus_7543#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 645 fasta sequence
[CCATNTGCATTTTCGGGTGACCAGCNCGGATNTCGACCGTGCCAAGCACGGCGGTATTGACTCCATGTCGGGCTGACGACTTGAAGAAGNTGANCAAGAACAAGAAGCTCATCAAGAAGCTCGCCCGCAAGTACGACGCTTTCATCGCCTCCGACACCCTGATCAAGCAGA-TTCCCCGTCTCCTTGGTCCCGGTCTGTCCAAGGCCGG-AAAGTTCCCCACCCCGGTCTCGCACGCCGACGACCTCAGCGGCAAGGTTACCGAGGTCAAGTCGACCATCAAGTTCCAGCTGAAGAAGGTTCTCTGCATGGGTGTCGCCGTCGGCAACGTCGAGATGACCCAGGAGCAGCTTGTTGGCAACATCATGTTGGCCATCAACTACCTCGTCTCCCTTCTGAAGAAGGGCTGGCAGAACGTTGGTAGCCTTACCATCAAGGCTACCATGTCTCCTCCCAAGCGCATCTACTAAGCTTTGACTTGGGGATCGGTTGGACAGAGTATTCGGCAGTTCGATGGTCGTGGCGACAGTCTTGTTACAAAGTAGAGGCTAGAAAGCCTGATAGCATCTAGCTCTAGTCTCAGCCAGAAAAAGAAGGTTTCCGCGGTCATAGAGACACGCGCGATACAGTTGCCCACCGAAAAAAAAA]
[+] EMBL AT003366 [CCATNTGCATTTTCGGGTGACCAGCNCGGATNTCGACCGTGCCAAGCACGGCGGTATTGACTCCATGTCGGGCTGACGACTTGAAGAAGNTGANCAAGAACAAGAAGCTCATCAAGAAGCTCGCCCGCAAGTACGACGCTTTCATCGCCTCCGACACCCTGATCAAGCAGA TTCCCCGTCTCCTTGGTCCCGGTCTGTCCAAGGCCGG AAAGTTCCCCACCCCGGTCTCGCACGCCGACGACCTCAGCGGCAAGGTTACCGAGGTCAAGTCGACCATCAAGTTCCAGCTGAAGAAGGTTCTCTGCATGGGTGTCGCCGTCGGCAACGTCGAGATGACCCAGGAGCAGCTTGTTGGCAACATCATGTTGGCCATCAACTACCTCGTCTCCCTTCTGAAGAAGGGCTGGCAGAACGTTGGTAGCCTTACCATCAAGGCTACCATGTCTCCTCCCAAGCGCATCTACTAAGCTTTGACTTGGGGATCGGTTGGACAGAGTATTCGGCAGTTCGATGGTCGTGGCGACAGTCTTGTTACAAAGTAGAGGCTAGAAAGCCTGATAGCATCTAGCTCTAGTCTCAGCCAGAAAAAGAAGGTTTCCGCGGTCATAGAGACACGCGCGATACAGTTGCCCACCGAAAAAAAAA]
[+] EMBL AT003351 [ CCGGCNCCCTGATCAAGCAGATTTCCCCGTCTCTTTGGTCCCGGTCTGTCCAAGGCCGGAAAAGTTCCCCACCCCGGTNTCGCACNCCGGCGACCTCAGCGGCAAGGTTACCGAGGTCAAGTCGACCATCAAGTTCCAGCTGAAGAAGGTTCTCTGCATGGGTGTCGCCGTCGGCAACGTCGAGATGACCCAGGAGCAGCTTGTTGGCAACATCATGTTGGCCATCAACTACCTCGTCTCCCTTCTGAAGAAGGGCTGGCAGAACGTTGGTAGCCTTACCATCAAGGCTACCATGTCTCCTCCCAAGCGCATCTACTAAGCTTTGACTTGGGGATCGGTTGGACAGAGTATTCGGCAGTTCGATGGTCGTGGCGACAGTCTTGTTACAAAGTAGAGGCTAGAAAGCCTGATAGCATCTAGCTCTAGTCTCAGCCAGAAAAAGAAGGTTTCCGCGGTCATAGAGACACGCGCGATACAGTTGCCCACCGAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7543#1 GTTCTGACCCCATTAGATTATACGCCTATCTATTGGGAGACTGCCAAAATGTCGAAAATA 60
consensus_7543#2 ------------------------------------------------------------
consensus_7543#0 ------------------------------ATCAAAGACAACGTCAAGATGAGCAAGATC 30
consensus_7543#1 CAGTCG-CTAATGTCCGAACTCAGTGCGGAGAGCTCCTTGAGTACTCCAACGAGACCAAG 119
consensus_7543#2 ------------------------------------------------------------
consensus_7543#0 CAGGTGTCCAGCGTGCGTAACACCCTCAAGGAGCTGATCCAGGCTTCG---GAGGACAAG 87
consensus_7543#1 AAGCGAAACTTCCTTGAGACCGTTGAGCTTCAGATCGGCCTGAAGAACTATGACCCTCAG 179
consensus_7543#2 ------------------------------------------------------------
consensus_7543#0 CGCCGAAACTTCAACGAGACCGTCGAGCTCCAGATCGGCCTCAAGAACTACGACCCCCAG 147
consensus_7543#1 CGTGACAAGCGTTTCAGCGGCACCATTCGCCTGCCCAGCGTCCCTCGCCCCAACATGTCC 239
consensus_7543#2 ----------------------------------------------------------CC 2
consensus_7543#0 CGCGACAAGCGTTTCTCGGGTACCGTCAAGCTTCCCCATGTGCCCCGTCCCCGCATGAGC 207
*
consensus_7543#1 ATCTGCATTCTCGG-TGATGCCCACG-ATCTCGACCGAGCCAAGCACGGTGGTGTTGATG 297
consensus_7543#2 ATNTGCATTTTCGGGTGACCAGCNCGGATNTCGACCGTGCCAAGCACGGCGGTATTGACT 62
consensus_7543#0 ATGTGCATTCT-GGCCGACGCCGCCG-ATGTCGACCGTGCCAAGCTCATCAACCTCGAGT 265
** ****** * ** ** ** ** ******* ******* * * **
consensus_7543#1 CCATGTCCG-CCGATGACTTGAAGAAGCTCAACAAGAACAAGAAGCTCATCAAGAAGCTT 356
consensus_7543#2 CCATGTCGGGCTGACGACTTGAAGAAGNTGANCAAGAACAAGAAGCTCATCAAGAAGCTC 122
consensus_7543#0 TCATGACCG-TCGAGGACTTGAAGAAGCTCAACAAGAACAAGAAGCTCGTCAAGAAGCTC 324
**** * * ** ************ * * **************** **********
consensus_7543#1 GCTCGCAAGTACGATGCCTTCATTGCTTCCGAGGCTCTTATCAAGCAGATCCCTCGTCTC 416
consensus_7543#2 GCCCGCAAGTACGACGCTTTCATCGCCTCCGACACCCTGATCAAGCAGATTCCCCGTCTC 182
consensus_7543#0 GCCAAGAAGTACGACGCCTTCCTGGCCTCCGAGGCTCTGATCAAGCAGATCCCTCGTCTG 384
** ******** ** *** * ** ***** * ** *********** ** *****
consensus_7543#1 TTGGGTCCTGGTCTTTCCAAGGCCGGAAAGTTCCCTACCCCCGTTTCTCACGCCGATGAT 476
consensus_7543#2 CTTGGTCCCGGTCTGTCCAAGGCCGGAAAGTTCCCCACCCCGGTCTCGCACGCCGACGAC 242
consensus_7543#0 TTGGGCCCCGGTCTCTCCAAGGCCGGCAAGTTCCCCACCCCCGTCTCGCACAACGAGGAC 444
* ** ** ***** *********** ******** ***** ** ** *** *** **
consensus_7543#1 CTCTCAGGCCGTATCAACGAGGTTAAGTCTACCATCAAGTTCCAGCTCAAGAAGGTTCTC 536
consensus_7543#2 CTCAGCGGCAAGGTTACCGAGGTCAAGTCGACCATCAAGTTCCAGCTGAAGAAGGTTCTC 302
consensus_7543#0 CTCGAGAAGAAGGTCACCGAGGTCAAGAGCACCATCAAGTTCCAGCTCAAGAAGGTTCTC 504
*** * * ****** *** ***************** ************
consensus_7543#1 TGCATGGGTGTCGCCGTCGGCAACGTTGAGATGACTACCGAGCAACTCGTCGCTAACGTC 596
consensus_7543#2 TGCATGGGTGTCGCCGTCGGCAACGTCGAGATGACCCAGGAGCAGCTTGTTGGCAACATC 362
consensus_7543#0 TGCCTCGGTGTCGCCGTCGGCCACGTCCAGATGACCGACGACCAGCTGCTGGCCAACGTC 564
*** * *************** **** ******* ** ** ** * * *** **
consensus_7543#1 ATGTTGGCCATCAACTACCTTGTCTCTCTTCTCAAGAAGGGCTGGCAGAACGTTTGGAAG 656
consensus_7543#2 ATGTTGGCCATCAACTACCTCGTCTCCCTTCTGAAGAAGGGCTGGCAGAACGTT-GGTAG 421
consensus_7543#0 ATGCTTGCCATCAACTTCCTCATCTCGCTCCTCAAGAAGCAGTGGCAGAACATCAAGTCG 624
*** * ********** *** **** ** ** ****** ********* * * *
consensus_7543#1 TCTTACCATCAAGGCTTCCATGTCTNCCCCCCGTCGTCTCTACTAGATG-TGGNTATTTG 715
consensus_7543#2 CCTTACCATCAAGGCTACCATGTCTCCTCCCAAGCGCATCTACTAAGCT-TTGACTTGGG 480
consensus_7543#0 CTCCAC-GTCAAGTCGACCATGGGCAAGGTCTACCGCCTCTTCTAAGCGGTTGTTCGCCA 683
** ***** * ***** * ** *** *** * *
consensus_7543#1 GGTTTCTGTCT---------GAGAGGATTCGAC-AAATCGGTCCGCTTAAATGGGGGACG 765
consensus_7543#2 GATCGGTTGGA---------CAGAGTATTCGGC-AGTTCGATGGTCGTGGCGACAGTCTT 530
consensus_7543#0 TGTCTCTTTCGACTAGCTTGGAGGGCTTTCGATGAATTCTGTTTCGGTCACTTGCATCCC 743
* * ** * **** * ** * *
consensus_7543#1 GGTTCAACTTG--GGCTAGGCAGACCTGA------------------------------- 792
consensus_7543#2 GTTACAAAGTAGAGGCTAGAAAG-CCTGATAGCATCTA--GCTCTAGTCTCAGCCAGAAA 587
consensus_7543#0 ACAAGGCATTTACGCACGCTTACACCCAGTTCCATTCGATGCCTCGGCTCGCGTCCGAGG 803
* * * **
consensus_7543#1 ------------------------------------------------------------
consensus_7543#2 AAGAAGGTTTCCGCGGTCATAGAGACACGCGCGATACAGTTGCCCACCGAAAAAAAAA-- 645
consensus_7543#0 AAGCGACTTGGGATGAGGGGAGCTAATCTTGTGACCTTACTCATCCCCCCCACCCTAAAA 863
consensus_7543#1 ------------------------------------------------------------
consensus_7543#2 ------------------------------------------------------------
consensus_7543#0 TACAAAATTGCCGTTGGAGGCGCACGCCGTCGTTCGCATTAGAGCGGCGGGTTGTGTCCT 923
consensus_7543#1 --
consensus_7543#2 --
consensus_7543#0 CT 925
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||