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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7551#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1848 fasta sequence
[ATTGCATGCACTCATCATTTCTTCTTCTTCTTCCTCGCCGCCCCGCCCCGCCCGCACGCCATATTCTTCTTGCAAATCAATTAGCAACAGAGCTGCAGCCAAATTGTGCAGATTAATTAGCTGTGGAGCGAGCTGTTGCTGACATTGATTTTGTTTTGTTGGATTTGCTGTGCAGGCGGCCACTCGACATCGACTACATACACAGCAGCAGCAGCAGCAAGAGGGCGCCGCCCAAGGACAAACCCGCCACTCCCGACTCCCCTGCGCCGCCGCCCCCAGCGTATTACTTCAAGAATAAGCCCGACGACAATGCCGCCGCCGCATCCGCCGCCTCCGCTGGCGCCGTCAACTACAAGCTCTTCAGCGAGCTGGAGACCATCTACAAGCCCGGCAGCGGAGGCCCCCAGACGGGCTCCGGCTCCGGCCTCACCGGGGACGACAATGCCATGCTCGCGCCGCCCATGGCTGACCTCCCCGACGCCGCCGCCGCCAACCCGCCGCACCTCAACACGTCCGAGACGTCTGCCGGGGAGGACGCGCACGCCGTGGTGCAGCCGCAGCCGCAGACGCAGCAGCCGTCGGGGGCGGACGCGGCGCGCCGCAGCGCAAGCGGCGGCGCCAGGAGCAGCTCAGCGCGTCGGCCTCCTTCTTCGAGCGCCTGGTCAGCGCCTCATGGAGCACCAGGAGAGCCTCCACCGTCAGTTCCTCGACACCATGGAGCGCCGGGAGCGGGAGCGCGCCGCCCGCGACGAGGCGTGGCGCCGCCAGGAGGCCGACAAGTTCGCGCGCGAGGCCGCCGCGCGCGCGCAGGACCGCGCCAGCGCCGCTGCACGCGAGTCCGCCATCATCGCCTACCTGGAAAAGATCTCCGGCGAGACCATCACGCTCCCACCCCCCGCCGCCAACCCCGCTCCGGGCGCCGACGAGCAGGACGGCGTGGGGAAGGAGGTGGTGGCGTACGACGGCGAGGGGTCGCTGCAGCTGAGCTCGTCGCGGTGGCCGAAGCACGAGGTGGAGGCGCTGATCCGGGTGCGGACGGGGCTGGAGGATAGGTTCCAGGAGCCAGGGCTGAAGGGCCCCCTGTGGGAGGAGGTGAGCGCGCGCATGGCGGCGGCGGGCTACCGGCGGAACGCGAAGCGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCCGCAAGGCCAAGGAGAGCGGCAAGAAGCGGCCGGCGCACGCCAAGACGTGCCCCTACTTCGACGAGCTCGACCGCCTCTACTCCCGCTCCGGCTCCGGCGGCGGTGGTGGGTCGTCCTCGGCGGGCGGCAATGGCGGGGAGGAGGCGAAGGGCAGCTCGGAGCTGCTGGACGCGGTGGTGAAGTACCCAGACGTGCGGTGCGCGCCGCCGGGTTTCCCGTTCGACGGGGAGCAGAACGAGGAAGGGAGGACGAAGGACGACGGCGACGAGGCGCACCATGATGGCGACGGCGACGGCGACGAGGAAGACGTTGGCGTTGGCGTTGGGAGAGCGACCGATGATCATGACGACCAAGTGGATGAGAGCCATGACGGCCATTAATTAACTAGTTTAGTGCTTATTGCTCTCTCTCCTTCCTTCTCATCATTAGCCATGCAATTAAGCTTCTTCTGCTGCTTAATAGCTCTCTCTCTCTCGTCTCATCGTCTCCTCTCATTCTCATCTGCACAAAGAGAGAGAGAGAGAGATAGTGATAGCTTGGCTGGGCTCACAAGTCACAGCATTTTTCTTCTTTTGTTGCTTCTGTTGGTCTCT-C-TTAGCTATATCCATTATTCCTTAATCCTTACATGTTAATTAGTGAGTACTGCTTTTTCGCTTATATATGATATGATC]
[+] EMBL AK120063 [ATTGCATGCACTCATCATTTCTTCTTCTTCTTCCTCGCCGCCCCGCCCCGCCCGCACGCCATATTCTTCTTGCAAATCAATTAGCAACAGAGCTGCAGCCAAATTGTGCAGATTAATTAGCTGTGGAGCGAGCTGTTGCTGACATTGATTTTGTTTTGTTGGATTTGCTGTGCAGGCGGCCACTCGACATCGACTACATACACAGCAGCAGCAGCAGCAAGAGGGCGCCGCCCAAGGACAAACCCGCCACTCCCGACTCCCCTGCGCCGCCGCCCCCAGCGTATTACTTCAAGAATAAGCCCGACGACAATGCCGCCGCCGCATCCGCCGCCTCCGCTGGCGCCGTCAACTACAAGCTCTTCAGCGAGCTGGAGACCATCTACAAGCCCGGCAGCGGAGGCCCCCAGACGGGCTCCGGCTCCGGCCTCACCGGGGACGACAATGCCATGCTCGCGCCGCCCATGGCTGACCTCCCCGACGCCGCCGCCGCCAACCCGCCGCACCTCAACACGTCCGAGACGTCTGCCGGGGAGGACGCGCACGCCGTGGTGCAGCCGCAGCCGCAGACGCAGCAGCCGTCGGGGGCGGACGCGGCGCGCCGCAGCGCAAGCGGCGGCGCCAGGAGCAGCTCAGCGCGTCGGCCTCCTTCTTCGAGCGCCTGGTCAGCGCCTCATGGAGCACCAGGAGAGCCTCCACCGTCAGTTCCTCGACACCATGGAGCGCCGGGAGCGGGAGCGCGCCGCCCGCGACGAGGCGTGGCGCCGCCAGGAGGCCGACAAGTTCGCGCGCGAGGCCGCCGCGCGCGCGCAGGACCGCGCCAGCGCCGCTGCACGCGAGTCCGCCATCATCGCCTACCTGGAAAAGATCTCCGGCGAGACCATCACGCTCCCACCCCCCGCCGCCAACCCCGCTCCGGGCGCCGACGAGCAGGACGGCGTGGGGAAGGAGGTGGTGGCGTACGACGGCGAGGGGTCGCTGCAGCTGAGCTCGTCGCGGTGGCCGAAGCACGAGGTGGAGGCGCTGATCCGGGTGCGGACGGGGCTGGAGGATAGGTTCCAGGAGCCAGGGCTGAAGGGCCCCCTGTGGGAGGAGGTGAGCGCGCGCATGGCGGCGGCGGGCTACCGGCGGAACGCGAAGCGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCCGCAAGGCCAAGGAGAGCGGCAAGAAGCGGCCGGCGCACGCCAAGACGTGCCCCTACTTCGACGAGCTCGACCGCCTCTACTCCCGCTCCGGCTCCGGCGGCGGTGGTGGGTCGTCCTCGGCGGGCGGCAATGGCGGGGAGGAGGCGAAGGGCAGCTCGGAGCTGCTGGACGCGGTGGTGAAGTACCCAGACGTGCGGTGCGCGCCGCCGGGTTTCCCGTTCGACGGGGAGCAGAACGAGGAAGGGAGGACGAAGGACGACGGCGACGAGGCGCACCATGATGGCGACGGCGACGGCGACGAGGAAGACGTTGGCGTTGGCGTTGGGAGAGCGACCGATGATCATGACGACCAAGTGGATGAGAGCCATGACGGCCATTAATTAACTAGTTTAGTGCTTATTGCTCTCTCTCCTTCCTTCTCATCATTAGCCATGCAATTAAGCTTCTTCTGCTGCTTAATAGCTCTCTCTCTCTCGTCTCATCGTCTCCTCTCATTCTCATCTGCACAAAGAGAGAGAGAGAGAGATAGTGATAGCTTGGCTGGGCTCACAAGTCACAGCATTTTTCTTCTTTTGTTGCTTCTGTTGGTCTCT C TTAGCTATATCCATTATTCCTTAATCCTTACATGTTAATTAGTGAGTACTGCTTTTTCGCTTATATATGATATGATC]
[-] EMBL CB645227 [ AGCTGAGCTCGTCGCGGTGGCCGAAGCACGAGGTGGAGGCGCTGATCCGGGTGCGGACGGGGCTGGAGGATAGGTTCCAGGAGCCAGGGCTGAAGGGCCCCCTGTGGGAGGAGGTGAGCGCGCGCATGGCGGCGGCGGGCTACCGGCGGAACGCGAAGCGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCCGCAAGGCCAAGGAGAGCGGCAAGAAGCGGCCGGCGCACGCCAAGACGTGCCCCTACTTCGACGAGCTCGACCGCCTCTACTCCCGCTCCGGCTCCGGCGGCGGTGGTGGGTCGTCCTCGGCGGGCGGCAATGGCGGGGAGGAGGCGAAGGGCAGCTCGGAGCTGCTGGACGCGGTGGTGAAGTACCCAGACGTGCGGTGCGCGCCGCCGGGTTTCCCGTTCGACGGGGAGCAGAACGAGGAAGGGAGGACGAAGGACGACGGCGACGAGGCGCACCATGATGGCGACGGCGACGGCGACGAGGAAGACGTTGGCGTTGGCGTTGGGAGAGCGACCGATGATCATGACGACCAAGTGGATGAGAGCCATGACGGCCATTAATTAACTAGTTTAGTGCTTATTGCTCTCTCTCCTTCCTTCTCATCATTAGCCATGCAATTAAGCTTCTTCTGCTGCTTAATAGCTCTCTCTCTCTCGTCTCATCGTCTCCTCTCATTCTCATCTGCACAAAGAGAGAGAGAGAGAGATAGTGATAGCTTGGCTGGGCTCACAAGTCACAGCATTTTTCTTCTTTTGTTGCTTCTGTTGGTCTCTACGGGAGCTATATCCATTATTCCTTAATC ]
[+] EMBL BI795397 [ ccgGAGAGAGATAGTGATAGCTTGGCTGGGCTCACAAGTCACAGCATTTTTCTTCTTTTGTTGCTTCTGTTGGTCTCT C TTAGCTATATCCATTATTCCTTAATCCTTACATGTTAAaaaaa ]
consensusID : consensus_7551#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence
[CTNCCCNNTGNANCGATTAGCCNTGCAATTAAGCTNCTTCTGCTGCTTAANAGNTCTCTGTCTCNCGTCTCANCGTCTCCTCTNATTCTCATCTGCACAAAGAGAGAGAGAGAGAGATAGTGATANCTTGGCTGGGCTCACAAGTCACAGCATTTTTCTTCTTTTGTTGCTTCTGTTGGTCTCTCTTAGCTATANCCATTANTCCTTAANCCTTACATGTTAATTAGTGAGTACTGCTTTTTCGCTTAAAAAAAAAAAAAAAAAA]
[+] EMBL AU067905 [CTNCCCNNTGNANCGATTAGCCNTGCAATTAAGCTNCTTCTGCTGCTTAANAGNTCTCTGTCTCNCGTCTCANCGTCTCCTCTNATTCTCATCTGCACAAAGAGAGAGAGAGAGAGATAGTGATANCTTGGCTGGGCTCACAAGTCACAGCATTTTTCTTCTTTTGTTGCTTCTGTTGGTCTCTCTTAGCTATANCCATTANTCCTTAANCCTTACATGTTAATTAGTGAGTACTGCTTTTTCGCTTAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7551#0 ATTGCATGCACTCATCATTTCTTCTTCTTCTTCCTCGCCGCCCCGCCCCGCCCGCACGCC 60
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 ATATTCTTCTTGCAAATCAATTAGCAACAGAGCTGCAGCCAAATTGTGCAGATTAATTAG 120
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 CTGTGGAGCGAGCTGTTGCTGACATTGATTTTGTTTTGTTGGATTTGCTGTGCAGGCGGC 180
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 CACTCGACATCGACTACATACACAGCAGCAGCAGCAGCAAGAGGGCGCCGCCCAAGGACA 240
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 AACCCGCCACTCCCGACTCCCCTGCGCCGCCGCCCCCAGCGTATTACTTCAAGAATAAGC 300
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 CCGACGACAATGCCGCCGCCGCATCCGCCGCCTCCGCTGGCGCCGTCAACTACAAGCTCT 360
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 TCAGCGAGCTGGAGACCATCTACAAGCCCGGCAGCGGAGGCCCCCAGACGGGCTCCGGCT 420
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 CCGGCCTCACCGGGGACGACAATGCCATGCTCGCGCCGCCCATGGCTGACCTCCCCGACG 480
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 CCGCCGCCGCCAACCCGCCGCACCTCAACACGTCCGAGACGTCTGCCGGGGAGGACGCGC 540
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 ACGCCGTGGTGCAGCCGCAGCCGCAGACGCAGCAGCCGTCGGGGGCGGACGCGGCGCGCC 600
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 GCAGCGCAAGCGGCGGCGCCAGGAGCAGCTCAGCGCGTCGGCCTCCTTCTTCGAGCGCCT 660
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 GGTCAGCGCCTCATGGAGCACCAGGAGAGCCTCCACCGTCAGTTCCTCGACACCATGGAG 720
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 CGCCGGGAGCGGGAGCGCGCCGCCCGCGACGAGGCGTGGCGCCGCCAGGAGGCCGACAAG 780
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 TTCGCGCGCGAGGCCGCCGCGCGCGCGCAGGACCGCGCCAGCGCCGCTGCACGCGAGTCC 840
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 GCCATCATCGCCTACCTGGAAAAGATCTCCGGCGAGACCATCACGCTCCCACCCCCCGCC 900
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 GCCAACCCCGCTCCGGGCGCCGACGAGCAGGACGGCGTGGGGAAGGAGGTGGTGGCGTAC 960
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 GACGGCGAGGGGTCGCTGCAGCTGAGCTCGTCGCGGTGGCCGAAGCACGAGGTGGAGGCG 1020
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 CTGATCCGGGTGCGGACGGGGCTGGAGGATAGGTTCCAGGAGCCAGGGCTGAAGGGCCCC 1080
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 CTGTGGGAGGAGGTGAGCGCGCGCATGGCGGCGGCGGGCTACCGGCGGAACGCGAAGCGG 1140
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 TGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCCGCAAGGCCAAGGAGAGCGGCAAG 1200
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 AAGCGGCCGGCGCACGCCAAGACGTGCCCCTACTTCGACGAGCTCGACCGCCTCTACTCC 1260
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 CGCTCCGGCTCCGGCGGCGGTGGTGGGTCGTCCTCGGCGGGCGGCAATGGCGGGGAGGAG 1320
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 GCGAAGGGCAGCTCGGAGCTGCTGGACGCGGTGGTGAAGTACCCAGACGTGCGGTGCGCG 1380
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 CCGCCGGGTTTCCCGTTCGACGGGGAGCAGAACGAGGAAGGGAGGACGAAGGACGACGGC 1440
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 GACGAGGCGCACCATGATGGCGACGGCGACGGCGACGAGGAAGACGTTGGCGTTGGCGTT 1500
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 GGGAGAGCGACCGATGATCATGACGACCAAGTGGATGAGAGCCATGACGGCCATTAATTA 1560
consensus_7551#1 ------------------------------------------------------------
consensus_7551#0 ACTAGTTTAGTGCTTATTGCTCTCTCTCCTTCCTTCTCATC-ATTAGCCATGCAATTAAG 1619
consensus_7551#1 ---------------------------CTNCCCNNTGNANCGATTAGCCNTGCAATTAAG 33
* ** * * ******* **********
consensus_7551#0 CTTCTTCTGCTGCTTAATAGCTCTCTCTCTCTCGTCTCATCGTCTCCTCTCATTCTCATC 1679
consensus_7551#1 CTNCTTCTGCTGCTTAANAGNTCTCTGTCTCNCGTCTCANCGTCTCCTCTNATTCTCATC 93
** ************** ** ***** **** ******* ********** *********
consensus_7551#0 TGCACAAAGAGAGAGAGAGAGAGATAGTGATAGCTTGGCTGGGCTCACAAGTCACAGCAT 1739
consensus_7551#1 TGCACAAAGAGAGAGAGAGAGAGATAGTGATANCTTGGCTGGGCTCACAAGTCACAGCAT 153
******************************** ***************************
consensus_7551#0 TTTTCTTCTTTTGTTGCTTCTGTTGGTCTCTCTTAGCTATATCCATTATTCCTTAATCCT 1799
consensus_7551#1 TTTTCTTCTTTTGTTGCTTCTGTTGGTCTCTCTTAGCTATANCCATTANTCCTTAANCCT 213
***************************************** ****** ******* ***
consensus_7551#0 TACATGTTAATTAGTGAGTACTGCTTTTTCGCTTATATATGATATGATC--- 1848
consensus_7551#1 TACATGTTAATTAGTGAGTACTGCTTTTTCGCTTAAAAAAAAAAAAAAAAAA 265
*********************************** * * * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||