These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7552#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1442 fasta sequence [CTCTCCGCCTGCCGCGCCGCGAGCTCCCAGAGAATCACCGGCGCATTCCGCTGCGATTCTTGCTGCAGCAGCGGCCGCGGCGGCGGCGGCCACCTCGTGAAGGCTTGAAGCCCACCGGGGAAGGGGAGGGAGGGAGCCCACCGGGGAAGGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGGCTGCGGGCTTCTCGCGGCGGGATGGCGCTGCAAAGCTGCTGCTCCTCCTCCGCCTCCGTGCCCGCGACCTGTTCGGCGCTTTGCCTCGCGGAAGCGACGCGCGCCGCGAGCCTCTTCGTGCGCCCGCGCGCCGCCGCGAGGAGGCTCGTGCTCGCCCGATGCGCGCGGGGGCGGGAGGGCGGCGAGTCCAA-GCGGTGCAGCTGGTGCTCGGCGGCCGCGCGCGCGACGACGGGTCCGAGTCCGAGTCCAGCGACGACGAGGACGACGACGAGCCGATGCAGATGACGGACGAGCAGAGGAGGACGCTGCGGAGGAAGATACGGGAGATGATGGACCGGGTGCCCGAGACGGCGGAGATCACGGACCCGGCGGAGAGGAAGGCCAAGATGCTGGAGCTGCTGACCAAGTACCAGCTCGTGGTGGAGGAGGAGGACCCGAACTGGCCGGAGGACGATGAGGACGGCCATGGGTTCAGCCTCGGCCAGTTCTTCGACAAGATCACCATCAAGGCCGAGAAGAAGAATGATGATGATGAGGAGGACGATGCTAAGGGGAATCAGAGTGACAAGGAGATAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGGATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAAGACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGGAATACAATCTGCCTTCACCAAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTGTGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAGTTCACCGTGACAAAGTCGTCCGATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGCCTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAACAGTGTGTAGGCGTAGCTTGTA-GTTGTATTTTACATCAGTGTGCATTGTTAGAAA-CTTAGAGTTTAAATCAGTTCACATTTCTTAGCTTTTTAAATGTCGTAACACAGGCATCTATTAGCATCTACTAGTGAATTGCCATCTTTATCTGTTAATGGCATAGAATAGATATATCCAAACTGCAACAAGATTATGTTCATGTGCTGTAGGATTATGGTTAAAAA] [+] EMBL AK071955 [CTCTCCGCCTGCCGCGCCGCGAGCTCCCAGAGAATCACCGGCGCATTCCGCTGCGATTCTTGCTGCAGCAGCGGCCGCGGCGGCGGCGGCCACCTCGTGAAGGCTTGAAGCCCACCGGGGAAGGGGAGGGAGGGAGCCCACCGGGGAAGGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGGCTGCGGGCTTCTCGCGGCGGGATGGCGCTGCAAAGCTGCTGCTCCTCCTCCGCCTCCGTGCCCGCGACCTGTTCGGCGCTTTGCCTCGCGGAAGCGACGCGCGCCGCGAGCCTCTTCGTGCGCCCGCGCGCCGCCGCGAGGAGGCTCGTGCTCGCCCGATGCGCGCGGGGGCGGGAGGGCGGCGAGTCCAA GCGGTGCAGCTGGTGCTCGGCGGCCGCGCGCGCGACGACGGGTCCGAGTCCGAGTCCAGCGACGACGAGGACGACGACGAGCCGATGCAGATGACGGACGAGCAGAGGAGGACGCTGCGGAGGAAGATACGGGAGATGATGGACCGGGTGCCCGAGACGGCGGAGATCACGGACCCGGCGGAGAGGAAGGCCAAGATGCTGGAGCTGCTGACCAAGTACCAGCTCGTGGTGGAGGAGGAGGACCCGAACTGGCCGGAGGACGATGAGGACGGCCATGGGTTCAGCCTCGGCCAGTTCTTCGACAAGATCACCATCAAGGCCGAGAAGAAGAATGATGATGATGAGGAGGACGATGCTAAGGGGAATCAGAGTGACAAGGAGATAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGGATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAAGACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGGAATACAATCTGCCTTCACCAAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTGTGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAGTTCACCGTGACAAAGTCGTCCGATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGCCTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAACAGTGTGTAGGCGTAGCTTGTA GTTGTATTTTACATCAGTGTGCATTGTTAGAAA CTTAGAGTTTAAATCAGTTCACATTTCTTAGCTTTTTAAATGTCGTAACACAGGCATCTATTAGCATCTACTAGTGAATTGCCATCTTTATCTGTTAATGGCATAGAATAGATATATCCAAACTGCAACAAGATTATGTTCATGTGCTGTAGGATT ] [+] EMBL CB631158 [ AGAGAGAGAGAGAGGCTGCGGGCTTCTCGCGGCGGGATGGCGCTGCAAAGCTGCTGCTCCTCCTCCGCCTCCGTGCCCGCGACCTGTTCGGCGCTTTGCCTCGCGGAAGCGACGCGCGCCGCGAGCCTCTTCGTGCGCCCGCGCGCCGCCGCGAGGAGGCTCGTGCTCGCCCGATGCGCGCGGGGGCGGGAGGGCGGCGAGTCCAAGGCGGTGCAGCTGGTGCTCGGCGGCCGCGCGCGCGACGACGGGTCCGAGTCCGAGTCCAGCGACGACGAGGACGACGACGAGCCGATGCAGATGACGGACGAGCAGAGGAGGACGCTGCGGAGGAAGATACGGGAGATGATGGACCGGGTGCCCGAGACGGCGGAGATCACGGACCCGGCGGAGAGGAAGGCCAAGATGCTGGAGCTGCTGACCAAGTACCAGCTCGTGGTGGAGGAGGAGGACCCGAACTGGCCGGAGGACGATGAGGACGGCCATGGGTTCAGCCTCGGCCAGTTCTTCGACAAGATCACCATCAAGGCCGAGAAGAAGAATGATGATGATGAGGAGGACGATGCTAAGGGGAATCAGAGTGACAAGGAGATAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGGATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAAGACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGGAATACAATCT ] [+] EMBL BI799982 [ AGATGTTTTGGGAATACAATCTGCCTTCACCCAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTGTGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAGTTCACCGTGACAAAGTCGTCCGATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGCCTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAACAGTGTGTAGGCGTAGCTTGTACGTTGTATTTTACATCAGTGTGCATTGTTAGAAACCTTAGAGTTTAAATCAGTTCACATTTCTTAGCTTTTTAAATGTCGTAACACAGGCATCTATTAGCATCTACTAGTGAATTGCCATCTTTATCTGTTAATGGCATAGAATAGATATATCC AACTGCAACAAGATTATGTTCATGTGCTGTAGGATTATGGTTAAAAA] consensusID : consensus_7552#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [TGACAAGGAGATAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGGATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAAGACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGGAATACAATCTGCCTTCACCCAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTGTGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAGTTCACCGTGACAAAGGTATTTGTATGAGCATAGGAGCATAATGCTATGTTGTTTTAAACCCTCAGTTGGCCAATTGCCTCATGAGGTTTTCTCAATTTTGTTCTCCCTTGTTAGTCGTCCGATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGCCTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAACAGTGTGTAGGCGTAGCTTGTAGTTGTATTTTACTTCAGTGTGCATTGGTAGAAACTTAGAGNTTAAATCAGNTCACATTTCTTAG] [+] EMBL CA763864 [TGACAAGGAGATAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGGATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAAGACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGGAATACAATCTGCCTTCACCCAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTGTGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAGTTCACCGTGACAAAGGTATTTGTATGAGCATAGGAGCATAATGCTATGTTGTTTTAAACCCTCAGTTGGCCAATTGCCTCATGAGGTTTTCTCAATTTTGTTCTCCCTTGTTAGTCGTCCGATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGCCTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAACAGTGTGTAGGCGTAGCTTGTAGTTGTATTTTACTTCAGTGTGCATTGGTAGAAACTTAGAGNTTAAATCAGNTCACATTTCTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7552#0 CTCTCCGCCTGCCGCGCCGCGAGCTCCCAGAGAATCACCGGCGCATTCCGCTGCGATTCT 60 consensus_7552#1 ------------------------------------------------------------ consensus_7552#0 TGCTGCAGCAGCGGCCGCGGCGGCGGCGGCCACCTCGTGAAGGCTTGAAGCCCACCGGGG 120 consensus_7552#1 ------------------------------------------------------------ consensus_7552#0 AAGGGGAGGGAGGGAGCCCACCGGGGAAGGGGAGGGAGGGAGAGAGAGAGAGAGAGAGAG 180 consensus_7552#1 ------------------------------------------------------------ consensus_7552#0 AGAGAGAGAGGGAGAGAGAGAGAGAGGCTGCGGGCTTCTCGCGGCGGGATGGCGCTGCAA 240 consensus_7552#1 ------------------------------------------------------------ consensus_7552#0 AGCTGCTGCTCCTCCTCCGCCTCCGTGCCCGCGACCTGTTCGGCGCTTTGCCTCGCGGAA 300 consensus_7552#1 ------------------------------------------------------------ consensus_7552#0 GCGACGCGCGCCGCGAGCCTCTTCGTGCGCCCGCGCGCCGCCGCGAGGAGGCTCGTGCTC 360 consensus_7552#1 ------------------------------------------------------------ consensus_7552#0 GCCCGATGCGCGCGGGGGCGGGAGGGCGGCGAGTCCAAGCGGTGCAGCTGGTGCTCGGCG 420 consensus_7552#1 ------------------------------------------------------------ consensus_7552#0 GCCGCGCGCGCGACGACGGGTCCGAGTCCGAGTCCAGCGACGACGAGGACGACGACGAGC 480 consensus_7552#1 ------------------------------------------------------------ consensus_7552#0 CGATGCAGATGACGGACGAGCAGAGGAGGACGCTGCGGAGGAAGATACGGGAGATGATGG 540 consensus_7552#1 ------------------------------------------------------------ consensus_7552#0 ACCGGGTGCCCGAGACGGCGGAGATCACGGACCCGGCGGAGAGGAAGGCCAAGATGCTGG 600 consensus_7552#1 ------------------------------------------------------------ consensus_7552#0 AGCTGCTGACCAAGTACCAGCTCGTGGTGGAGGAGGAGGACCCGAACTGGCCGGAGGACG 660 consensus_7552#1 ------------------------------------------------------------ consensus_7552#0 ATGAGGACGGCCATGGGTTCAGCCTCGGCCAGTTCTTCGACAAGATCACCATCAAGGCCG 720 consensus_7552#1 ------------------------------------------------------------ consensus_7552#0 AGAAGAAGAATGATGATGATGAGGAGGACGATGCTAAGGGGAATCAGAGTGACAAGGAGA 780 consensus_7552#1 -------------------------------------------------TGACAAGGAGA 11 *********** consensus_7552#0 TAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGG 840 consensus_7552#1 TAGTTTGGGAGGACGACAACTACATCAAGCCAATCAGGGATGTCAAGACCATGGACTGGG 71 ************************************************************ consensus_7552#0 ATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAA 900 consensus_7552#1 ATGACACCGTCTTCACGGACTTCGGTCCTTTGATTGTGCTTGTTCATAACCGATACAAAA 131 ************************************************************ consensus_7552#0 GACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGG 960 consensus_7552#1 GACCGCAGGACAATGAAAATGCAAGGGATCAACTAGTTAAGGCAATTGAGATGTTTTGGG 191 ************************************************************ consensus_7552#0 AATACAATCTGCCTTCACCAAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTG 1020 consensus_7552#1 AATACAATCTGCCTTCACCCAGGTGCGTGGCTGTAGATGCCTGTGCAGAACCTGACCTTG 251 ******************* **************************************** consensus_7552#0 TGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAG 1080 consensus_7552#1 TGAAGGCCCTGAATGTTTCTGGTTTCCCAGAGGTCCTCTTCACTAATGCAGGGAAGATAG 311 ************************************************************ consensus_7552#0 TTCACCGTGACAAAG--------------------------------------------- 1095 consensus_7552#1 TTCACCGTGACAAAGGTATTTGTATGAGCATAGGAGCATAATGCTATGTTGTTTTAAACC 371 *************** consensus_7552#0 ------------------------------------------------------TCGTCC 1101 consensus_7552#1 CTCAGTTGGCCAATTGCCTCATGAGGTTTTCTCAATTTTGTTCTCCCTTGTTAGTCGTCC 431 ****** consensus_7552#0 GATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGC 1161 consensus_7552#1 GATCGGCTGAGGAATGGACAAGAATGATGGCATTCTTCTACTATAAAGCAGCAAGGCCGC 491 ************************************************************ consensus_7552#0 CTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAAC 1221 consensus_7552#1 CTTGCTTGAGCGAGGCAGATGGTCAGGGTCAAGAAAAGGTCCCCCTGATGTCATAAGAAC 551 ************************************************************ consensus_7552#0 AGTGTGTAGGCGTAGCTTGTAGTTGTATTTTACATCAGTGTGCATTGTTAGAAACTTAGA 1281 consensus_7552#1 AGTGTGTAGGCGTAGCTTGTAGTTGTATTTTACTTCAGTGTGCATTGGTAGAAACTTAGA 611 ********************************* ************* ************ consensus_7552#0 GTTTAAATCAGTTCACATTTCTTAGCTTTTTAAATGTCGTAACACAGGCATCTATTAGCA 1341 consensus_7552#1 GNTTAAATCAGNTCACATTTCTTAG----------------------------------- 636 * ********* ************* consensus_7552#0 TCTACTAGTGAATTGCCATCTTTATCTGTTAATGGCATAGAATAGATATATCCAAACTGC 1401 consensus_7552#1 ------------------------------------------------------------ consensus_7552#0 AACAAGATTATGTTCATGTGCTGTAGGATTATGGTTAAAAA 1442 consensus_7552#1 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||