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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7555#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1302 fasta sequence
[ATGCAGCTGCGGGCTGAAATTCTGAATAAATGCTTGGGATTCTGCTTTGCATCATAAAACAGACAAAGATACAGCAGCCGATCGCAACTTCACGCCATCATCGTCCCACTTTGTCTCTGGAGCAGTGGCACCGGCAATATATGGCTGGCCACACAACACCACATGGCAATTCAAATTAAATACTGGGACCGAAATAGGATGCCAAAGTCCAGCAATTAAAAAGAAAATGAATCGATAATGTCATTAAATCTCTAAGATAAAGCTACAGATTACAAGCTTTCGGGACATCTGTATATTTGGTCCATTGGTGTTCCCAGAACAGAAACAAACATGAAGACAGGAAAACATTTTCCCAGAACAGAACTGCCCACAAAAACATAAAGGAAATGAGTGAATACCTTTCCACTATTCACAGGAGCCATTACAGCAACATGTTCTTTGTCCACACCAAACTCATAAAAGTAATATGTCCTGCAGAACCAATCTCTCATGACCAAAATCAAAATACAAGAACAATTCTGTCCAAATTGGGACACTTATTGATGAGGGATAAGATTTTTTTTTTGCCTCAAAATAAATAGAAAAGGGCATATAGTACCTTATATCATCTTCATCCTTAACTTTAATTGTTCGAGCTGAGTATAATTTTGCGCCACCTATGAAATGAGACAAAAGAATTTACAAACAAATTGGAAGAGCTAAGTCAGATATTTCCAAATGAGTACATTATGCTAGCACTACATGCTAACAGAATATTTTTGCTTCATGTTTCCTCATATAATTTTTTGAAGTGATGGAAACAAAAAATGGATACAAGTTTATATTTCTTTGAATATTTTAACCAAGCATCAATATTGATCATACAAAGTTTTACGAAGACAACAGTAGATAACGACAAAGTTGTACAATGTGAAAGAAACAGTTCAAAATAGAATGTAGTAAGCATGTGAGTACATTGTGCAACTCATTAAGAAAGCAGTTAATAGTGCACTTCCTTGCTGGACATTTATTTTAAAAATGATGCAAAATTAACCAACATCATAAGAACATTGTTAAGATAAGATGCCCCTTCAATTTGTAAACATGATGTTTTAGATGTTAGGTCATTCAGGTGAAACATCATATATACAGCAGCGCCCACACAAGAAGCTAGATCAAGAGTTAGCAATTTCCTTTGATAAGTGAAAACTGTGAATATGCCGTGTCCTTATTCATCTTAGAAACTTATTTTAAAAGCAAAGTACATCTCTGAAGTCTAAGATAACAGTAATCACCAGGTACAAATATCTTTGATGCCTCCTT]
[+] EMBL CB665245 [ATGCAGCTGCGGGCTGAAATTCTGAATAAATGCTTGGGATTCTGCTTTGCATCATAAAACAGACAAAGATACAGCAGCCGATCGCAACTTCACGCCATCATCGTCCCACTTTGTCTCTGGAGCAGTGGCACCGGCAATATATGGCTGGCCACACAACACCACATGGCAATTCAAATTAAATACTGGGACCGAAATAGGATGCCAAAGTCCAGCAATTAAAAAGAAAATGAATCGATAATGTCATTAAATCTCTAAGATAAAGCTACAGATTACAAGCTTTCGGGACATCTGTATATTTGGTCCATTGGTGTTCCCAGAACAGAAACAAACATGAAGACAGGAAAACATTTTCCCAGAACAGAACTGCCCACAAAAACATAAAGGAAATGAGTGAATACCTTTCCACTATTCACAGGAGCCATTACAGCAACATGTTCTTTGTCCACACCAAACTCATAAAAGTAATATGTCCTGCAGAACCAATCTCTCATGACCAAAATCAAAATACAAGAACAATTCTGTCCAAATTGGGACACTTATTGATGAGGGATAAGATTTTTTTTTTGCCTCAAAATAAATAGAAAAGGGCATATAGTACCTTATATCATCTTCATCCTTAACTTTAATTGTTCGAGCTGAGTATAATTTTGCGCCACCTATGAAATGAGACAAAAGAATTTACAAACAAATTGGAAGAGCTAAGTCAGATATTTCCAAATGAGTACATTATGCTAGCACTACATGCTAACAGAATATTTTTGCTTCATGTTTCCTCATA ]
[-] EMBL CB665244 [ TATGTCCTGCAGAACCAATCTCTCATGACCAAAATCAAAATACAAGAACAATTCTGTCCAAATTGGGACACTTATTGATGAGGGATAAGATTTTTTTTTTGCCTCAAAATAAATAGAAAAGGTCATATAGTACCTTATATCATCTTCATCCTTAACTTTAATTGTTCGAGCTGAGTATAATTTTGCGCCACCTATGAAATGAGACAAAAGAATTTACAAACAAATTGGAAGAGCTAAGTCAGATATTTCCAAATGAGTACATTATGCTAGCACTACATGCTAACAGAATATTTTTGCTTCATGTTTCCTCATATAATTTTTTGAAGTGATGGAAACAAAAAATGGATACAAGTTTATATTTCTTTGAATATTTTAACCAAGCATCAATATTGATCATACAAAGTTTTACGAAGACAACAGTAGATAACGACAAAGTTGTACAATGTGAAAGAAACAGTTCAAAATAGAATGTAGTAAGCATGTGAGTACATTGTGCAACTCATTAAGAAAGCAGTTAATAGTGCACTTCCTTGCTGGACATTTATTTTAAAAATGATGCAAAATTAACCAACATCATAAGAACATTGTTAAGATAAGATGCCCCTTCAATTTGTAAACATGATGTTTTAGATGTTAGGTCATTCAGGTGAAACATCATATATACAGCAGCGCCCACACAAGAAGCTAGATCAAGAGTTAGCAATTTCCTTTGATAAGTGAAAACTGTGAATATGCCGTGTCCTTATTCATCTTAGAAACTTATTTTAAAAGCAAAGTACATCTCTGAAGTCTAAGATAACAGTAATCACCAGGTACAAATATCTTTGATGCCTCCTT]
consensusID : consensus_7555#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1013 fasta sequence
[ACTCTTGTATTATCCTTTGGCTGCGTACACCCATTTGGGTGTAGAGGACATGTTTTATCTATCTATTATCTAAAAAAACACGACCAAAAAATAAGATGATATGATTCATCTATGCAGCTGCGGCCTGAAATTCTGAATAAATGCTTGGTATTCTGCTTTGCATCATAAAACAGACAAAGATACAGCAGCCGATCGCAACTTCACGCCATCATCGTCCCACTTTGTCTCTGGAGCAGTGGCACCGGCAATATATGTCTTTCCACTATTCACAGTAGCCATTACAGCAACATGTTCTTTGTCCACACCAAACTCATAAAAGTAATATGTCCTTATATCATCTTCATCCTTAACTTTAATTGTTCGAGCTGAGTATAATTTTGCGCCACCAGGTACAAATATCTTTGATGCCTCCTTTAAAGTGCCCAGGTCTGTTACATCTTTGGCCTCTAGGAATGTGATTTTGAGCTGATTCGATGGCTTAATTACCACGCTTACAAGTTCAGACCTGTCCGGAGACGCGAAGCGAGCAGCGTATGTCCTGGGCTTCGCCTTGTCGCCGTAGTAGGTCACCCCGACGTTGAACTCCTCGGGCTCCAAGATGTCGTCGAAGGAAGGGGGAACGCGGATGGAGAAGCCGCTGCCGTAGTACTGCGACCACGACTTGGTGTTCGCGATGCCGCCCAGCAGAGGGGAGCCCTTCTTATTTTGGGAAGGCTCCCCCGGTGGCGCCTCCTCGTCGGCGGCGGCGGCGGTGGCCGGACGAACGGAGACCGCAACCGCGGCGGAGGCGGAGGCGATGGCGGTGTGGATGGCGAAGTCGCGGCGCGAGGCGCCGCATGCCGAGGCGGGGCTCCGCCGCCGGGGCGGCGGGTTCTGGGGATACGGAGGCGAGGGGGCGAGGCGGAGGAGCACGGCGGGGGCCATTGCGCGGCGAGGCGGCGGCGCCACTGCCGAGCGGACGGCGCGGAAGCCGCGGCGGGAGAGGCTGGAAGTTCGCCGTGGTGAGAGGAACG]
[-] EMBL AK060678 [ACTCTTGTATTATCCTTTGGCTGCGTACACCCATTTGGGTGTAGAGGACATGTTTTATCTATCTATTATCTAAAAAAACACGACCAAAAAATAAGATGATATGATTCATCTATGCAGCTGCGGCCTGAAATTCTGAATAAATGCTTGGTATTCTGCTTTGCATCATAAAACAGACAAAGATACAGCAGCCGATCGCAACTTCACGCCATCATCGTCCCACTTTGTCTCTGGAGCAGTGGCACCGGCAATATATGTCTTTCCACTATTCACAGTAGCCATTACAGCAACATGTTCTTTGTCCACACCAAACTCATAAAAGTAATATGTCCTTATATCATCTTCATCCTTAACTTTAATTGTTCGAGCTGAGTATAATTTTGCGCCACCAGGTACAAATATCTTTGATGCCTCCTTTAAAGTGCCCAGGTCTGTTACATCTTTGGCCTCTAGGAATGTGATTTTGAGCTGATTCGATGGCTTAATTACCACGCTTACAAGTTCAGACCTGTCCGGAGACGCGAAGCGAGCAGCGTATGTCCTGGGCTTCGCCTTGTCGCCGTAGTAGGTCACCCCGACGTTGAACTCCTCGGGCTCCAAGATGTCGTCGAAGGAAGGGGGAACGCGGATGGAGAAGCCGCTGCCGTAGTACTGCGACCACGACTTGGTGTTCGCGATGCCGCCCAGCAGAGGGGAGCCCTTCTTATTTTGGGAAGGCTCCCCCGGTGGCGCCTCCTCGTCGGCGGCGGCGGCGGTGGCCGGACGAACGGAGACCGCAACCGCGGCGGAGGCGGAGGCGATGGCGGTGTGGATGGCGAAGTCGCGGCGCGAGGCGCCGCATGCCGAGGCGGGGCTCCGCCGCCGGGGCGGCGGGTTCTGGGGATACGGAGGCGAGGGGGCGAGGCGGAGGAGCACGGCGGGGGCCATTGCGCGGCGAGGCGGCGGCGCCACTGCCGAGCGGACGGCGCGGAAGCCGCGGCGGGAGAGGCTGGAAGTTCGCCGTGGTGAGAGGAACG]
consensusID : consensus_7555#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 786 fasta sequence
[ATGCAGCTGCGGCCTGAAATTCTGAATAAATGCTTGGTATTCTGCTTTGCATCATAAAACAGACAAAGATACAGCAGCCGATCGCAACTTCACGCCATCATCGTCCCACTTTGTCTCTGGAGCAGTGGCACCGGCAATATATGTCTTTCCACTATTCACAGTAGCCATTACAGCAACATGTTCTTTGTCCACACCAAACTCATAAAAGTAATATGTCCTTATATCATCTTCATCCTTAACTTTAATTGTTCGAGCTGAGTATAATTTTGCGCCACCAGGTACAAATATCTTTGATGCCTCCTTTAAAGTGCCCAGGTCTGTTATATCTTTGGCCTACAAACCAATGTTTGTGTCAAAACATAAATTTTTTGGCTGATTGTGTGCAACATAAAATAATTCAAAATAAAAAACATGTCTTTGGGCCTTGATTACAGAGAATTGTTGATATAAAGAAACATTATGAACACTCCTGCACCTACTAGTGCAGTACCAGTTTCTACTAGTCAGTTGGAGCAAAAAAAGTAATGTTTGTCGCCTCTCTGTGAATCAATGCTACTATTGTTCATTATAAATATAATTAATTGGGACTTGACATGTGTTATCAATACTATATTTATTTCTATATAATTCTTATTATTGGTTAGGGGTGTTTATCAAAGGATGGTAAATTATCAACATATAAAGCACCATCAAACTTGTCATCATTTCGTTTTCGTTAATGAAAACAGGAGGATCCTGCCTCTCTTTATCCAAAAAATAAAATAAAATTAAAGTGCCATCAATCAT]
[+] EMBL CB679743 [ATGCAGCTGCGGCCTGAAATTCTGAATAAATGCTTGGTATTCTGCTTTGCATCATAAAACAGACAAAGATACAGCAGCCGATCGCAACTTCACGCCATCATCGTCCCACTTTGTCTCTGGAGCAGTGGCACCGGCAATATATGTCTTTCCACTATTCACAGTAGCCATTACAGCAACATGTTCTTTGTCCACACCAAACTCATAAAAGTAATATGTCCTTATATCATCTTCATCCTTAACTTTAATTGTTCGAGCTGAGTATAATTTTGCGCCACCAGGTACAAATATCTTTGATGCCTCCTTTAAAGTGCCCAGGTCTGTTATATCTTTGGCCTACAAACCAATGTTTGTGTCAAAACATAAATTTTTTGGCTGATTGTGTGCAACATAAAATAATTCAAAATAAAAAACATGTCTTTGGGCCTTGATTACAGAGAATTGTTGATATAAAGAAACATTATGAACACTCCTGCACCTACTAGTGCAGTACCAGTTTCTACTAGTCAGTTGGAGCAAAAAAAGTAATGTTTGTCGCCTCTCTGTGAATCAATGCTACTATTGTTCATTATAAATATAATTAATTGGGACTTGACATGTGTTATCAATACTATATTTATTTCTATATAATTCTTATTATTGGTTAGGGGTGTTTATCAAAGGATGGTAAATTATCAACATATAAAGCACCATCAAACTTGTCATCATTTCGTTTTCGTTAATGAAAACAGGAGGATCCTGCCTCTCTTTATCCAAAAAATAAAATAAAATTAAAGTGCCATCAATCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7555#1 ACTCTTGTATTATCCTTTGGCTGCGTACACCCATTTGGGTGTAGAGGACATGTTTTATCT 60
consensus_7555#2 ------------------------------------------------------------
consensus_7555#0 ------------------------------------------------------------
consensus_7555#1 ATCTATTATCTAAAAAAACACGACCAAAAAATAAGATGATATGATTCATCTATGCAGCTG 120
consensus_7555#2 ---------------------------------------------------ATGCAGCTG 9
consensus_7555#0 ---------------------------------------------------ATGCAGCTG 9
*********
consensus_7555#1 CGGCCTGAAATTCTGAATAAATGCTTGGTATTCTGCTTTGCATCATAAAACAGACAAAGA 180
consensus_7555#2 CGGCCTGAAATTCTGAATAAATGCTTGGTATTCTGCTTTGCATCATAAAACAGACAAAGA 69
consensus_7555#0 CGGGCTGAAATTCTGAATAAATGCTTGGGATTCTGCTTTGCATCATAAAACAGACAAAGA 69
*** ************************ *******************************
consensus_7555#1 TACAGCAGCCGATCGCAACTTCACGCCATCATCGTCCCACTTTGTCTCTGGAGCAGTGGC 240
consensus_7555#2 TACAGCAGCCGATCGCAACTTCACGCCATCATCGTCCCACTTTGTCTCTGGAGCAGTGGC 129
consensus_7555#0 TACAGCAGCCGATCGCAACTTCACGCCATCATCGTCCCACTTTGTCTCTGGAGCAGTGGC 129
************************************************************
consensus_7555#1 ACCGGCAATATATGTCTTTCCACTATTCACAGTA-GCCATTACAGCAACATGTTCTTTGT 299
consensus_7555#2 ACCGGCAATATATGTCTTTCCACTATTCACAGTA-GCCATTACAGCAACATGTTCTTTGT 188
consensus_7555#0 ACCGGCAATATATGGCTGGCCACACAACACCACATGGCAATTCAA-ATTAAATACTGGGA 188
************** ** **** *** * * ** * ** * * * ** *
consensus_7555#1 CC--------ACACCAAACTCATAAAAGTAATATGTCCTTATATCATCTTCATCCTTAAC 351
consensus_7555#2 CC--------ACACCAAACTCATAAAAGTAATATGTCCTTATATCATCTTCATCCTTAAC 240
consensus_7555#0 CCGAAATAGGATGCCAAAGTCCAGCAATTAAAAAGAAAATGAATCGATAATGTCATTAAA 248
** * ***** ** ** *** * * * *** ** ****
consensus_7555#1 TTTAATTGTTCGAGCT---GAGTATAA--TTTTGCGCCACCAG-GTACAAATATCTTTGA 405
consensus_7555#2 TTTAATTGTTCGAGCT---GAGTATAA--TTTTGCGCCACCAG-GTACAAATATCTTTGA 294
consensus_7555#0 TCTCTAAGATAAAGCTACAGATTACAAGCTTTCGGGACATCTGTATATTTGGTCCATTGG 308
* * * * **** ** ** ** *** * * ** * * ** * ***
consensus_7555#1 TGCCTCCTTTAAAGTGCCCAG------GTCTGTTACATCTTTGGCCTCTAGGAATGTGAT 459
consensus_7555#2 TGCCTCCTTTAAAGTGCCCAG------GTCTGTTATATCTTTGGCCTACAAACCAATGTT 348
consensus_7555#0 TGTTCCCAGAACAGAAACAAACATGAAGACAGGAAAACATTTTCCCAGAACAGAACTGCC 368
** ** * ** * * * * * * * *** ** * **
consensus_7555#1 TTTGAGCTGATTCGATGGCTTAATTACCACGCTTACAAGTTCAGACCTGTCCGGAGACGC 519
consensus_7555#2 TGTG-------TCAAAACATAAATTTTTTGGCTGATTGTGTGCAACATAA--AATAATTC 399
consensus_7555#0 CACA---------AAAACATAAAGGAAATGAGTGAATACCTTTCCACTATTCACAGGAGC 419
* * ** * * * * *
consensus_7555#1 GAAGCGAGCAGCGTATGTCCTGGGCTTCGCCTTGTCGCCGTAGTAGGTCACCCCGACGTT 579
consensus_7555#2 AAAATAAAAAACATGTCTT-TGGGCCTTG----ATTACAGAGAATTGTTGATATAAAGAA 454
consensus_7555#0 CATTACAGCAACATGTTCTTTGTCCACACCAAACTCATAAAAGTAATATGTCCTGCAGAA 479
* * * * * * ** * * *
consensus_7555#1 GAACTCCTCGGGCTCCAAGATGTCGTCGAAGGAAGGGGGAACGCGGATGGAGAAGCCGCT 639
consensus_7555#2 ACATTATGAACACTCCTGCACCTACT-------------AGTGCAGTACCAGTTTCTACT 501
consensus_7555#0 CCAATCTCTCATGACCAAAATCAAAATACAAGAAC----AATTCTGTCCAAATTGGGAC- 534
* * ** * * * * * *
consensus_7555#1 GCCGTAGTACTGCGACCACGACTTGGTGTTCGCGATGCCGCCCAGCAGAGGGGAGCCCTT 699
consensus_7555#2 AGTCAGTTGGAGCAA--AAAAAGTAATGTTTGT--CGCCTCTCTGTGAATCAATGCTACT 557
consensus_7555#0 -ACTTATTGATGAGG----GATAAGATTTTTTTTTTGCCTCAAAATAAATAGAAAAGGGC 589
* * * * ** *** * *
consensus_7555#1 CTTATTTTGGGAAGGCTCCCCCGGTGGCGCCTCCTCGTCGGCGGCGGCGGCGGTGGCCGG 759
consensus_7555#2 ATTGTTCATTATAAATATAATTAATTGGGACTTGACATGTGTTATCAATACTATATTTAT 617
consensus_7555#0 ATATAGTACCTTATATCATCTTCAT----CCTTAACTTTAATTGTTCGAGCTGAGTATAA 645
* * * ** * * *
consensus_7555#1 ACGAACGGAGACCGCAACCGCGGC-GGAGGCGGAGGCGATGGCGGTGTGGATGGCGAAGT 818
consensus_7555#2 TTCTATATAATTCTTATTATTGGTTAGGGGTGTTTATCAAAGGATGGTAAATTATCAACA 677
consensus_7555#0 TTTTGCGCCACCTATGAAATGAGACAAAAGAATTTACAAACAAATTGGAAGAGCTAAGTC 705
* * * * *
consensus_7555#1 CGCGGCGCGAGGCGCCGCATGCCGAGGCGGGGCT-C-CGCCGCCGGGG--CGGCGGGTTC 874
consensus_7555#2 TATAAAGCACCATCAAACTTGTCATCATTTCGTT-TTCGTTAATGAAAACAGGAGGATCC 736
consensus_7555#0 AGATATTTCCAAATGAGTACATTATGCTAGCACTACATGCTAACAGAA-TATTTTTGCTT 764
* *
consensus_7555#1 TGGGGATACGGAGGCGAGGGGGCGAGGCGGAGGAGCACGGCGGGGGCCATTGCGCGGCGA 934
consensus_7555#2 TGCCTCTCTTTATCCAAAAAATAAAATAAAATTAAAGTGCCATCAATCAT---------- 786
consensus_7555#0 CATGTTTCCTCATATAATTTTTTGAAGTGATGGAAACAAAAAATGGATACAAGTTTATAT 824
* * * * * *
consensus_7555#1 GGCGGCGGCGCCACTGCCGAGCGGACGGCGCGGAAGCCGCGGCGGGAGAGGCTGGAAGTT 994
consensus_7555#2 ------------------------------------------------------------
consensus_7555#0 TTCTTTGAATATTTTAACCAAGCATCAATATTGATCATACAAAGTTTTACGAAGACAACA 884
consensus_7555#1 CGCCGTGGTGAGAGGAACG----------------------------------------- 1013
consensus_7555#2 ------------------------------------------------------------
consensus_7555#0 GTAGATAACGACAAAGTTGTACAATGTGAAAGAAACAGTTCAAAATAGAATGTAGTAAGC 944
consensus_7555#1 ------------------------------------------------------------
consensus_7555#2 ------------------------------------------------------------
consensus_7555#0 ATGTGAGTACATTGTGCAACTCATTAAGAAAGCAGTTAATAGTGCACTTCCTTGCTGGAC 1004
consensus_7555#1 ------------------------------------------------------------
consensus_7555#2 ------------------------------------------------------------
consensus_7555#0 ATTTATTTTAAAAATGATGCAAAATTAACCAACATCATAAGAACATTGTTAAGATAAGAT 1064
consensus_7555#1 ------------------------------------------------------------
consensus_7555#2 ------------------------------------------------------------
consensus_7555#0 GCCCCTTCAATTTGTAAACATGATGTTTTAGATGTTAGGTCATTCAGGTGAAACATCATA 1124
consensus_7555#1 ------------------------------------------------------------
consensus_7555#2 ------------------------------------------------------------
consensus_7555#0 TATACAGCAGCGCCCACACAAGAAGCTAGATCAAGAGTTAGCAATTTCCTTTGATAAGTG 1184
consensus_7555#1 ------------------------------------------------------------
consensus_7555#2 ------------------------------------------------------------
consensus_7555#0 AAAACTGTGAATATGCCGTGTCCTTATTCATCTTAGAAACTTATTTTAAAAGCAAAGTAC 1244
consensus_7555#1 ----------------------------------------------------------
consensus_7555#2 ----------------------------------------------------------
consensus_7555#0 ATCTCTGAAGTCTAAGATAACAGTAATCACCAGGTACAAATATCTTTGATGCCTCCTT 1302
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||