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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 816 fasta sequence
[CCGAAACACAACCACCCGTGAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTCGCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAGCACCGGGGCGGATAATCTGCTGCTGCTGCTGCTGCTGCAAGGTCTCGAATACCCAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGCGCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCGTTCCTCGACGACGCCCAGGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCGTACCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACACTGTGGTTTGCACATGCACTTGCCGTTGAAACTAGCCAGAATTTATCGTCATCTTCCACTTGGATTGAGTTAAGTGTACGTTCTTGTCTCTGCATTGTTCTCAATGGATATCT]
[+] EMBL AK120232 [CCGAAACACAACCACCCGTGAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTCGCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAGCACCGGGGCGGATAATCTGCTGCTGCTGCTGCTGCTGCAAGGTCTCGAATACCCAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGCGCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCGTTCCTCGACGACGCCCAGGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCGTACCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACACTGTGGTTTGCACATGCACTTGCCGTTGAAACTAGCCAGAATTTATCGTCATCTTCCACTTGGATTGAGTTAAGTGTACGTTCTTGTCTCTGCATTGTTCTCAATGGATATCT]
[+] EMBL AK062016 [ GCTCCCAGTAGTCCAGTACTCTCGCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAGCACCGGGGCGGATAATCTGCTGCTGCTGCTGCTGCTGCAAGGTCTCGAATACCCAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGCGCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCGTTCCTCGACGACGCCCAGGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCGTACCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACGCTGTGGTTTGCACATGCACTTGCCGTTGAAACTAGCCAGAATTTATCGTCATCTTCCACTTGGATTG ]
[+] EMBL CF326645 [ GATAATCTGCTGCTGCTGCTGCTGCTGCAAGGTCTCGAATACCCAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGCGCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCGTTCCTCGACGACGCCCAGGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCGTACCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAAT ]
consensusID : consensus_7571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[GAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTCGCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAGCACCGGGGCGGATAATCTGCTGCTGCTGCTGCAAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCTACGTGCTCACCTGCGTCGCGTACCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACAGTGTGGTTTGCACATGCACTTGCCGTTGAAACTAGCCAGAATTTATCGTC]
[+] EMBL BF430859 [GAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTCGCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAGCACCGGGGCGGATAATCTGCTGCTGCTGCTGCAAGACTTCGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCACGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACGCTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTACACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACCTACATCCTGGACGCGGCTACGTGCTCACCTGCGTCGCGTACCCGACCGCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACAGTGTGGTTTGCACATGCACTTGCCGTTGAAACTAGCCAGAATTTATCGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7571#0 CCGAAACACAACCACCCGTGAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTC 60
consensus_7571#1 -------------------GAGTCCGTCACCGCTCCTGCTCCCAGTAGTCCAGTACTCTC 41
*****************************************
consensus_7571#0 GCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAG 120
consensus_7571#1 GCTCCACTCTCCTCGCCGAGTCGCCGTCGCCGCCTCGGCCAGCTTCGGATTGGGTTCCAG 101
************************************************************
consensus_7571#0 CACCGGGGCGGATAATCTGCTGCTGCTGCTGCTGCTGCAAGGTCTCGAATACCCAGACTT 180
consensus_7571#1 CACCGGGGCGGATAATCTGCTGCTGCTGCTGCA---------------------AGACTT 140
******************************** ******
consensus_7571#0 CGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCA 240
consensus_7571#1 CGAGAGATGGCAACAACTACCGTCACCACACCAATTCTCTGCAACCTCAGCGCCAAGCCA 200
************************************************************
consensus_7571#0 CGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACG 300
consensus_7571#1 CGCGACACCCTGCGCCTGCCGACGACGCGTTCGCCGAACGACGGCACGAGGCGAACGACG 260
************************************************************
consensus_7571#0 CTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTAC 360
consensus_7571#1 CTCCACCTGAGCTCGTCAAGAGCCCGCGGCGACTTGATCCGCGCCGCCGCCGCCGTCTAC 320
************************************************************
consensus_7571#0 ACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACC 420
consensus_7571#1 ACGGTGAAGCTCATCGGGCCGGAGGGGCAGGAGAGCGTGATCAAGGTGCCGGAGGACACC 380
************************************************************
consensus_7571#0 TACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGC 480
consensus_7571#1 TACATCCTGGACGCGGC------------------------------------------- 397
*****************
consensus_7571#0 GCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCG 540
consensus_7571#1 ------------------------------------------------------------
consensus_7571#0 TTCCTCGACGACGCCCAGGTCGGCGCCGGCTACGTGCTCACCTGCGTCGCGTACCCGACC 600
consensus_7571#1 ------------------------------TACGTGCTCACCTGCGTCGCGTACCCGACC 427
******************************
consensus_7571#0 GCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTT 660
consensus_7571#1 GCCAACAGCGTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTT 487
************************************************************
consensus_7571#0 GCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACACTGTGGTTTGCACATGC 720
consensus_7571#1 GCACTTGATGATTTGATCCATCACTTTCGATGCAATCTTGACAGTGTGGTTTGCACATGC 547
******************************************* ****************
consensus_7571#0 ACTTGCCGTTGAAACTAGCCAGAATTTATCGTCATCTTCCACTTGGATTGAGTTAAGTGT 780
consensus_7571#1 ACTTGCCGTTGAAACTAGCCAGAATTTATCGTC--------------------------- 580
*********************************
consensus_7571#0 ACGTTCTTGTCTCTGCATTGTTCTCAATGGATATCT 816
consensus_7571#1 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||