These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2479 fasta sequence [AGCTCCAAAGGTTCAGGGCATCATCGAATGAGACATCTTTGATTAAGAGATCTCCGGTGTTCCGTGCAGAAGCTCGGTCAACTGAAACTGAGAAATTCCGTACCAATGGCCGCGCGATAAAGATGGTCCCGACAACAGAGTTGAAAAGGAGCAAGAGTGGTGTCCGAGTAAGGCCAGACACAGTTAATGGCTCTCCAAGTGGTGCTGTCAATGGCTCAACCAAGGTGGCCATCAATGGTTCTCCTAATGCTGCTGTCAATGGTTCGATGAAAGCGGTAACTAATGGTTCTGTTAATGGGACTAGTTTGGTTAAAGGTAGCAATATGTCTGCTCTAGTGAAGACCCAAAAGCGAATGAGACCCAATGATGATCCCTTTGAAGAGGAGCTGAAGGTTTTGCCCTCTGATGAAGGATTCAGTTGGGCAAAAGATAATTACAACTCGTGGCAGAGGAGTGCAGATATCTGGTCTTTTGTTCTTTCTTTTCGAATCCGCGTTCTATTCGACAATGCCAAATGGGCCTACGCAGGTGGATTCTCGGAGGAAAAACAGAAAGTTCGGAGGAGGAAAACTGCTTCATGGTTAAGAGAACAAGTATTGCAGCTTGGCCCAACTTTTATTAAGCTTGGACAGTTATCTTCGACAAGATCTGATCTGTTTCCAAGGGAATTTGTGGATGAACTTGCAAAATTGCAGGATAGAGTACCCGCATTTTCTCCTGAGAAGGCAAAGGCTTTCATAGAGAAAGAAATGGGTTGCCCAATTGAAGTTGTGTACAAGGAATTTGACAATCGTCCGATAGCTGCTGCCAGTCTTGGTCAGGTACATCGTGCAGTGCTTCACAATGGAGAGAGAGTTGCAGTTAAAGTGCAGCGACCAGGGCTCAGAAAACTTTTTGACATTGACCTAAGGAATCTAAAACTAGTAGCTGAGTATTTTCAGAGCAGTGAGGCATTTGGTGGTCCTTCAAGGGATTGGATTGGTATTTATGAGGAATGTTCCAAAATTTTGTATGAAGAAATTGATTACATCAATGAAGGAAAGAATGCTGACAGATTTCGCCGAGATTTCAGAAATATAAAGTGGGTCCGTGTGCCACTTATCATGTGGGACTACACAACTGAAAAGGTGTTAACCCTCGAGTATGTTCCTGGTATTAAGATAAACAACTTGACTTTGTTGGATAATCGGGGATATAGTCGTTCCCTGATTGCATCTCGTTCAATAGAATCTTATCTTATTCAGATACTGAAGACCGGTTTCTTCCATGCTGATCCGCATCCTGGAAACCTTGCTATAGACACGGATGGCTCTCTTATATATTATGATTTTGGAATGATGGGTGAAATAAAATCATTCACTCGGGAGAGATTACTTTCCTTGTTTTATGCTGTGTACGAGAAGGATGCAAATAAGGTTATGAAAGCTCTAATTGACCTAGAAGCCCTCCAGGCAACAGGAGACCTTTCACCGGTTAGAAGATCCATACAATTTTTCTTGGACAATCTGCTGAGTCAGACGCCAGACCAACAGCAAACTTTGGCTGCGATTGGAGAGGACTTGTTTGCAATATCACAGGATCAACCTTTTCGTTTCCCATCCACATTTACATTTGTCATAAGGGCATTCTCAACTCTTGAAGGGATTGGATATATATTGGATCCAGATTTTTCCTTTGTGAAAGTTGCCGCACCTTATGCACAGGAACTTCTAGACTTGAAACAGAGACGAACAAGTGCACCTGAACTAGTCCGGGAGATAAGAAAGCAAGCAAACAGTGCTCGTGACTCTACCATCTCAATGCCCTACAGAATACAGCGAATTGAGGATTTTGTTGGGCAACTTGAGTCCGGTGATCTGAAACTTAGAGTCAGAGTACTTGAGTCTGAAAGAGCTGCTAGTAAGGCGAATGTACTTCAAATGGCGACCATGTATACAGCCATTGGTGGCACGCTGTTGAACGTTGGGGTCACATTGAGTAGCCAAGGGAACCAAATAGTGGCAAACGGGTCTTTTGTTGGCGCAGGCATATTCTTGGCATTGCTCATAAGATCTATGCAGAGAGTGAAGAAACTCGACAAATTCGAGACAATGATATAATTGTCAACTTGTCATATCATTCCAATTGGCTTTGCTGGAAGCTCATAATCTGTACCAGAAGCATGGCAAGACAATACTCCCTCTATCCCAAAAAGTGTCCAACTCTAGGGATTAATATACACACACCCCCTGTCCTTGTCTAGATTCATCACTAGAGTTGAACTCTTTTTGGGATAGAGTGAATAGGTCACCTCTCTTTTATTCTGTAAAAAAATTACATGGGGGAGTTTATCCCTTTATAGCCATACATATATAGTTTGGTAGGAGATGCCATTCTTTTTTTTAGAAAAAAACAATGGAATCAACTTGTTACAGCCTGTAAATCTGTACAATTGTATCATTTTTGAGCCGTAAGGTCTCTCTCAGAAATGAAACGAAAT] [+] EMBL AK120335 [AGCTCCAAAGGTTCAGGGCATCATCGAATGAGACATCTTTGATTAAGAGATCTCCGGTGTTCCGTGCAGAAGCTCGGTCAACTGAAACTGAGAAATTCCGTACCAATGGCCGCGCGATAAAGATGGTCCCGACAACAGAGTTGAAAAGGAGCAAGAGTGGTGTCCGAGTAAGGCCAGACACAGTTAATGGCTCTCCAAGTGGTGCTGTCAATGGCTCAACCAAGGTGGCCATCAATGGTTCTCCTAATGCTGCTGTCAATGGTTCGATGAAAGCGGTAACTAATGGTTCTGTTAATGGGACTAGTTTGGTTAAAGGTAGCAATATGTCTGCTCTAGTGAAGACCCAAAAGCGAATGAGACCCAATGATGATCCCTTTGAAGAGGAGCTGAAGGTTTTGCCCTCTGATGAAGGATTCAGTTGGGCAAAAGATAATTACAACTCGTGGCAGAGGAGTGCAGATATCTGGTCTTTTGTTCTTTCTTTTCGAATCCGCGTTCTATTCGACAATGCCAAATGGGCCTACGCAGGTGGATTCTCGGAGGAAAAACAGAAAGTTCGGAGGAGGAAAACTGCTTCATGGTTAAGAGAACAAGTATTGCAGCTTGGCCCAACTTTTATTAAGCTTGGACAGTTATCTTCGACAAGATCTGATCTGTTTCCAAGGGAATTTGTGGATGAACTTGCAAAATTGCAGGATAGAGTACCCGCATTTTCTCCTGAGAAGGCAAAGGCTTTCATAGAGAAAGAAATGGGTTGCCCAATTGAAGTTGTGTACAAGGAATTTGACAATCGTCCGATAGCTGCTGCCAGTCTTGGTCAGGTACATCGTGCAGTGCTTCACAATGGAGAGAGAGTTGCAGTTAAAGTGCAGCGACCAGGGCTCAGAAAACTTTTTGACATTGACCTAAGGAATCTAAAACTAGTAGCTGAGTATTTTCAGAGCAGTGAGGCATTTGGTGGTCCTTCAAGGGATTGGATTGGTATTTATGAGGAATGTTCCAAAATTTTGTATGAAGAAATTGATTACATCAATGAAGGAAAGAATGCTGACAGATTTCGCCGAGATTTCAGAAATATAAAGTGGGTCCGTGTGCCACTTATCATGTGGGACTACACAACTGAAAAGGTGTTAACCCTCGAGTATGTTCCTGGTATTAAGATAAACAACTTGACTTTGTTGGATAATCGGGGATATAGTCGTTCCCTGATTGCATCTCGTTCAATAGAATCTTATCTTATTCAGATACTGAAGACCGGTTTCTTCCATGCTGATCCGCATCCTGGAAACCTTGCTATAGACACGGATGGCTCTCTTATACATTATGATTTTGGAATGATGGGTGAAATAAAATCATTCACTCGGGAGAGATTACTTTCCTTGTTTTATGCTGTGTACGAGAAGGATGCAAATAAGGTTATGAAAGCTCTAATTGACCTAGAAGCCCTCCAGGCAACAGGAGACCTTTCACCGGTTAGAAGATCCATACAATTTTTCTTGGACAATCTGCTGAGTCAGACGCCAGACCAACAGCAAACTTTGGCTGCGATTGGAGAGGACTTGTTTGCAATATCACAGGATCAACCTTTTCGTTTCCCATCCACATTTACATTTGTCATAAGGGCATTCTCAACTCTTGAAGGGATTGGATATATATTGGATCCAGATTTTTCCTTTGTGAAAGTTGCCGCACCTTATGCACAGGAACTTCTAGACTTGAAACAGAGACGAACAAGTGCACCTGAACTAGTCCGGGAGATAAGAAAGCAAGCAAACAGTGCTCGTGACTCTACCATCTCAATGCCCTACAGAATACAGCGAATTGAGGATTTTGTTGGGCAACTTGAGTCCGGTGATCTGAAACTTAGAGTCAGAGTACTTGAGTCTGAAAGAGCTGCTAGTAAGGCGAATGTACTTCAAATGGCGACCATGTATACAGCCATTGGTGGCACGCTGTTGAACGTTGGGGTCACATTGAGTAGCCAAGGGAACCAAATAGTGGCAAACGGGTCTTTTGTTGGCGCAGGCATATTCTTGGCATTGCTCATAAGATCTATGCAGAGAGTGAAGAAACTCGACAAATTCGAGACAATGATATAATTGTCAACTTGTCATATCATTCCAATTGGCTTTGCTGGAAGCTCATAATCTGTACCAGAAGCATGGCAAGACAATACTCCCTCTATCCCAAAAAGTGTCCAACTCTAGGGATTAATATACACACACCCCCTGTCCTTGTCTAGATTCATCACTAGAGTTGAACTCTTTTTGGGATAGAGTGAATAGGTCACCTCTCTTTTATTCTGTAAAAAAATTACATGGGGGAGTTTATCCCTTTATAGCCATACATATATAGTTTGGTAGGAGATGCCATTCTTTTTTTTAGAAAAAAACAATGGAATCAACTTGTTACAGCCTGTAAATCTGTACAATTGTATCATTTTTGAGCCGTAAGGTCTCTCTCAGAAATGAAACGAAAT] [+] EMBL OSS10535A [ AAAGTGGGTCCGTGTGCCACTTATCATGTGGGACTACACAACTGAAAAGGTGTTAACCCTCGAGTATGTTCCTGGTATTAAGATAAACAACTTGACTTTGTTGGATAATCGGGGATATAGTCGTTCCCTGATTGCATCTCGTTCAATAGAATCTTATCTTATTCAGATACTGAAGACCGGTTTCTTCCATGCTGATCCGCATCCTGGAAACCTTGCTATAGACACGGATGGCTCTCTTATATATTATGATTTTGGAATGATGGGTGAAATAAAATCATTCACTCGGGAGAGATTACTTTCCTTGTTTTATGCTGTGTACGAGAAGGATGC AATAAGGTTATGAAAGCTCTAATTGACCT ] [+] EMBL OSS10688A [ AAAGTGGGTCCGTGTGCCACTTATCATGTGGGACTACACAACTGAAAAGGTGTTAACCCTCGAGTATGTTCCTGGTATTAAGATAAACAACTTGACTTTGTTGGATAATCGGGGATATAGTCGTTCCCTGATTGCATCTCGTTCAATAGAATCTTATCTTATTCAGATACTGAAGACCGGTTTCTTCCATNCTGATCCGCATCCTGGAAACCTTGCTATAGACACGGATGGNTCTCTTATATATTAng ] consensusID : consensus_7579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [TNGAAAGAGNACGTGNCGTCCCCGGCGTNAACTTTGGGGTAAGNNCATATNCTNTNNCAGANTCANGGTANTACNGTACTCCCTCTATCCCATAAAGTGTCCAACTCTAGGGATTAATATACACACNCCCCCTGTCCTTGTCTAGATTCATCACTAGAGTTGAACTCTTTTTGGGATAGAGTGAATAGGTCACCTCTCTTTTATTCTGTAAAAAAATNNGGGGGGGGAGTTTATCCCTTTATAGCCATACATATATAGTTTGGTAGGAGATGCCATTCTTTTTTTTAGAAAAANANTNTGGAATCAACTTGTCACAGCCTGTAAATCTGTACAATTGTATCATTTTTGAGCCGTGGGGTCTCTCTCAAAAATGAAACGAAATCTA] [+] EMBL AA751947 [TNGAAAGAGNACGTGNCGTCCCCGGCGTNAACTTTGGGGTAAGNNCATATNCTNTNNCAGANTCANGGTANTACNGTACTCCCTCTATCCCATAAAGTGTCCAACTCTAGGGATTAATATACACACNCCCCCTGTCCTTGTCTAGATTCATCACTAGAGTTGAACTCTTTTTGGGATAGAGTGAATAGGTCACCTCTCTTTTATTCTGTAAAAAAATNNGGGGGGGGAGTTTATCCCTTTATAGCCATACATATATAGTTTGGTAGGAGATGCCATTCTTTTTTTTAGAAAAANANTNTGGAATCAACTTGTCACAGCCTGTAAATCTGTACAATTGTATCATTTTTGAGCCGTGGGGTCTCTCTCAAAAATGAAACGAAATCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7579#0 AGCTCCAAAGGTTCAGGGCATCATCGAATGAGACATCTTTGATTAAGAGATCTCCGGTGT 60 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 TCCGTGCAGAAGCTCGGTCAACTGAAACTGAGAAATTCCGTACCAATGGCCGCGCGATAA 120 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 AGATGGTCCCGACAACAGAGTTGAAAAGGAGCAAGAGTGGTGTCCGAGTAAGGCCAGACA 180 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 CAGTTAATGGCTCTCCAAGTGGTGCTGTCAATGGCTCAACCAAGGTGGCCATCAATGGTT 240 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 CTCCTAATGCTGCTGTCAATGGTTCGATGAAAGCGGTAACTAATGGTTCTGTTAATGGGA 300 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 CTAGTTTGGTTAAAGGTAGCAATATGTCTGCTCTAGTGAAGACCCAAAAGCGAATGAGAC 360 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 CCAATGATGATCCCTTTGAAGAGGAGCTGAAGGTTTTGCCCTCTGATGAAGGATTCAGTT 420 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 GGGCAAAAGATAATTACAACTCGTGGCAGAGGAGTGCAGATATCTGGTCTTTTGTTCTTT 480 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 CTTTTCGAATCCGCGTTCTATTCGACAATGCCAAATGGGCCTACGCAGGTGGATTCTCGG 540 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 AGGAAAAACAGAAAGTTCGGAGGAGGAAAACTGCTTCATGGTTAAGAGAACAAGTATTGC 600 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 AGCTTGGCCCAACTTTTATTAAGCTTGGACAGTTATCTTCGACAAGATCTGATCTGTTTC 660 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 CAAGGGAATTTGTGGATGAACTTGCAAAATTGCAGGATAGAGTACCCGCATTTTCTCCTG 720 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 AGAAGGCAAAGGCTTTCATAGAGAAAGAAATGGGTTGCCCAATTGAAGTTGTGTACAAGG 780 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 AATTTGACAATCGTCCGATAGCTGCTGCCAGTCTTGGTCAGGTACATCGTGCAGTGCTTC 840 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 ACAATGGAGAGAGAGTTGCAGTTAAAGTGCAGCGACCAGGGCTCAGAAAACTTTTTGACA 900 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 TTGACCTAAGGAATCTAAAACTAGTAGCTGAGTATTTTCAGAGCAGTGAGGCATTTGGTG 960 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 GTCCTTCAAGGGATTGGATTGGTATTTATGAGGAATGTTCCAAAATTTTGTATGAAGAAA 1020 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 TTGATTACATCAATGAAGGAAAGAATGCTGACAGATTTCGCCGAGATTTCAGAAATATAA 1080 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 AGTGGGTCCGTGTGCCACTTATCATGTGGGACTACACAACTGAAAAGGTGTTAACCCTCG 1140 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 AGTATGTTCCTGGTATTAAGATAAACAACTTGACTTTGTTGGATAATCGGGGATATAGTC 1200 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 GTTCCCTGATTGCATCTCGTTCAATAGAATCTTATCTTATTCAGATACTGAAGACCGGTT 1260 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 TCTTCCATGCTGATCCGCATCCTGGAAACCTTGCTATAGACACGGATGGCTCTCTTATAT 1320 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 ATTATGATTTTGGAATGATGGGTGAAATAAAATCATTCACTCGGGAGAGATTACTTTCCT 1380 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 TGTTTTATGCTGTGTACGAGAAGGATGCAAATAAGGTTATGAAAGCTCTAATTGACCTAG 1440 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 AAGCCCTCCAGGCAACAGGAGACCTTTCACCGGTTAGAAGATCCATACAATTTTTCTTGG 1500 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 ACAATCTGCTGAGTCAGACGCCAGACCAACAGCAAACTTTGGCTGCGATTGGAGAGGACT 1560 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 TGTTTGCAATATCACAGGATCAACCTTTTCGTTTCCCATCCACATTTACATTTGTCATAA 1620 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 GGGCATTCTCAACTCTTGAAGGGATTGGATATATATTGGATCCAGATTTTTCCTTTGTGA 1680 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 AAGTTGCCGCACCTTATGCACAGGAACTTCTAGACTTGAAACAGAGACGAACAAGTGCAC 1740 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 CTGAACTAGTCCGGGAGATAAGAAAGCAAGCAAACAGTGCTCGTGACTCTACCATCTCAA 1800 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 TGCCCTACAGAATACAGCGAATTGAGGATTTTGTTGGGCAACTTGAGTCCGGTGATCTGA 1860 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 AACTTAGAGTCAGAGTACTTGAGTCTGAAAGAGCTGCTAGTAAGGCGAATGTACTTCAAA 1920 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 TGGCGACCATGTATACAGCCATTGGTGGCACGCTGTTGAACGTTGGGGTCACATTGAGTA 1980 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 GCCAAGGGAACCAAATAGTGGCAAACGGGTCTTTTGTTGGCGCAGGCATATTCTTGGCAT 2040 consensus_7579#1 ------------------------------------------------------------ consensus_7579#0 TGCTCATAAGATCTATGCAGAGAGTGAAGAAACTCGACAAATTCGAGACAATGATATAAT 2100 consensus_7579#1 -------------------------------------------------------TNGAA 5 * consensus_7579#0 TGTCAACTTGTCATATCATTCCAATTGGCTTTGCTGGAAGCTCATAATCTGTACCAGAAG 2160 consensus_7579#1 AGAGNACGTGNCGTCCCCGGC--GTNAACTTTGGGGTAAGNNCATATNCTNTNNCAGANT 63 * ** ** * * * * * ***** * *** **** ** * **** consensus_7579#0 CATGGCAAGACAATACTCCCTCTATCCCAAAAAGTGTCCAACTCTAGGGATTAATATACA 2220 consensus_7579#1 CANGGTANTACNGTACTCCCTCTATCCCATAAAGTGTCCAACTCTAGGGATTAATATACA 123 ** ** * ** **************** ****************************** consensus_7579#0 CACACCCCCTGTCCTTGTCTAGATTCATCACTAGAGTTGAACTCTTTTTGGGATAGAGTG 2280 consensus_7579#1 CACNCCCCCTGTCCTTGTCTAGATTCATCACTAGAGTTGAACTCTTTTTGGGATAGAGTG 183 *** ******************************************************** consensus_7579#0 AATAGGTCACCTCTCTTTTATTCTGTAAAAAAATTACATGGGGGAGTTTATCCCTTTATA 2340 consensus_7579#1 AATAGGTCACCTCTCTTTTATTCTGTAAAAAAATNNGGGGGGGGAGTTTATCCCTTTATA 243 ********************************** ********************* consensus_7579#0 GCCATACATATATAGTTTGGTAGGAGATGCCATTCTTTTTTTTAGAAAAAAACAATGGAA 2400 consensus_7579#1 GCCATACATATATAGTTTGGTAGGAGATGCCATTCTTTTTTTTAGAAAAANANTNTGGAA 303 ************************************************** * ***** consensus_7579#0 TCAACTTGTTACAGCCTGTAAATCTGTACAATTGTATCATTTTTGAGCCGTAAGGTCTCT 2460 consensus_7579#1 TCAACTTGTCACAGCCTGTAAATCTGTACAATTGTATCATTTTTGAGCCGTGGGGTCTCT 363 ********* ***************************************** ******* consensus_7579#0 CTCAGAAATGAAACGAAAT--- 2479 consensus_7579#1 CTCAAAAATGAAACGAAATCTA 385 **** ************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||