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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2479 fasta sequence
[AGCTCCAAAGGTTCAGGGCATCATCGAATGAGACATCTTTGATTAAGAGATCTCCGGTGTTCCGTGCAGAAGCTCGGTCAACTGAAACTGAGAAATTCCGTACCAATGGCCGCGCGATAAAGATGGTCCCGACAACAGAGTTGAAAAGGAGCAAGAGTGGTGTCCGAGTAAGGCCAGACACAGTTAATGGCTCTCCAAGTGGTGCTGTCAATGGCTCAACCAAGGTGGCCATCAATGGTTCTCCTAATGCTGCTGTCAATGGTTCGATGAAAGCGGTAACTAATGGTTCTGTTAATGGGACTAGTTTGGTTAAAGGTAGCAATATGTCTGCTCTAGTGAAGACCCAAAAGCGAATGAGACCCAATGATGATCCCTTTGAAGAGGAGCTGAAGGTTTTGCCCTCTGATGAAGGATTCAGTTGGGCAAAAGATAATTACAACTCGTGGCAGAGGAGTGCAGATATCTGGTCTTTTGTTCTTTCTTTTCGAATCCGCGTTCTATTCGACAATGCCAAATGGGCCTACGCAGGTGGATTCTCGGAGGAAAAACAGAAAGTTCGGAGGAGGAAAACTGCTTCATGGTTAAGAGAACAAGTATTGCAGCTTGGCCCAACTTTTATTAAGCTTGGACAGTTATCTTCGACAAGATCTGATCTGTTTCCAAGGGAATTTGTGGATGAACTTGCAAAATTGCAGGATAGAGTACCCGCATTTTCTCCTGAGAAGGCAAAGGCTTTCATAGAGAAAGAAATGGGTTGCCCAATTGAAGTTGTGTACAAGGAATTTGACAATCGTCCGATAGCTGCTGCCAGTCTTGGTCAGGTACATCGTGCAGTGCTTCACAATGGAGAGAGAGTTGCAGTTAAAGTGCAGCGACCAGGGCTCAGAAAACTTTTTGACATTGACCTAAGGAATCTAAAACTAGTAGCTGAGTATTTTCAGAGCAGTGAGGCATTTGGTGGTCCTTCAAGGGATTGGATTGGTATTTATGAGGAATGTTCCAAAATTTTGTATGAAGAAATTGATTACATCAATGAAGGAAAGAATGCTGACAGATTTCGCCGAGATTTCAGAAATATAAAGTGGGTCCGTGTGCCACTTATCATGTGGGACTACACAACTGAAAAGGTGTTAACCCTCGAGTATGTTCCTGGTATTAAGATAAACAACTTGACTTTGTTGGATAATCGGGGATATAGTCGTTCCCTGATTGCATCTCGTTCAATAGAATCTTATCTTATTCAGATACTGAAGACCGGTTTCTTCCATGCTGATCCGCATCCTGGAAACCTTGCTATAGACACGGATGGCTCTCTTATATATTATGATTTTGGAATGATGGGTGAAATAAAATCATTCACTCGGGAGAGATTACTTTCCTTGTTTTATGCTGTGTACGAGAAGGATGCAAATAAGGTTATGAAAGCTCTAATTGACCTAGAAGCCCTCCAGGCAACAGGAGACCTTTCACCGGTTAGAAGATCCATACAATTTTTCTTGGACAATCTGCTGAGTCAGACGCCAGACCAACAGCAAACTTTGGCTGCGATTGGAGAGGACTTGTTTGCAATATCACAGGATCAACCTTTTCGTTTCCCATCCACATTTACATTTGTCATAAGGGCATTCTCAACTCTTGAAGGGATTGGATATATATTGGATCCAGATTTTTCCTTTGTGAAAGTTGCCGCACCTTATGCACAGGAACTTCTAGACTTGAAACAGAGACGAACAAGTGCACCTGAACTAGTCCGGGAGATAAGAAAGCAAGCAAACAGTGCTCGTGACTCTACCATCTCAATGCCCTACAGAATACAGCGAATTGAGGATTTTGTTGGGCAACTTGAGTCCGGTGATCTGAAACTTAGAGTCAGAGTACTTGAGTCTGAAAGAGCTGCTAGTAAGGCGAATGTACTTCAAATGGCGACCATGTATACAGCCATTGGTGGCACGCTGTTGAACGTTGGGGTCACATTGAGTAGCCAAGGGAACCAAATAGTGGCAAACGGGTCTTTTGTTGGCGCAGGCATATTCTTGGCATTGCTCATAAGATCTATGCAGAGAGTGAAGAAACTCGACAAATTCGAGACAATGATATAATTGTCAACTTGTCATATCATTCCAATTGGCTTTGCTGGAAGCTCATAATCTGTACCAGAAGCATGGCAAGACAATACTCCCTCTATCCCAAAAAGTGTCCAACTCTAGGGATTAATATACACACACCCCCTGTCCTTGTCTAGATTCATCACTAGAGTTGAACTCTTTTTGGGATAGAGTGAATAGGTCACCTCTCTTTTATTCTGTAAAAAAATTACATGGGGGAGTTTATCCCTTTATAGCCATACATATATAGTTTGGTAGGAGATGCCATTCTTTTTTTTAGAAAAAAACAATGGAATCAACTTGTTACAGCCTGTAAATCTGTACAATTGTATCATTTTTGAGCCGTAAGGTCTCTCTCAGAAATGAAACGAAAT]
[+] EMBL AK120335 [AGCTCCAAAGGTTCAGGGCATCATCGAATGAGACATCTTTGATTAAGAGATCTCCGGTGTTCCGTGCAGAAGCTCGGTCAACTGAAACTGAGAAATTCCGTACCAATGGCCGCGCGATAAAGATGGTCCCGACAACAGAGTTGAAAAGGAGCAAGAGTGGTGTCCGAGTAAGGCCAGACACAGTTAATGGCTCTCCAAGTGGTGCTGTCAATGGCTCAACCAAGGTGGCCATCAATGGTTCTCCTAATGCTGCTGTCAATGGTTCGATGAAAGCGGTAACTAATGGTTCTGTTAATGGGACTAGTTTGGTTAAAGGTAGCAATATGTCTGCTCTAGTGAAGACCCAAAAGCGAATGAGACCCAATGATGATCCCTTTGAAGAGGAGCTGAAGGTTTTGCCCTCTGATGAAGGATTCAGTTGGGCAAAAGATAATTACAACTCGTGGCAGAGGAGTGCAGATATCTGGTCTTTTGTTCTTTCTTTTCGAATCCGCGTTCTATTCGACAATGCCAAATGGGCCTACGCAGGTGGATTCTCGGAGGAAAAACAGAAAGTTCGGAGGAGGAAAACTGCTTCATGGTTAAGAGAACAAGTATTGCAGCTTGGCCCAACTTTTATTAAGCTTGGACAGTTATCTTCGACAAGATCTGATCTGTTTCCAAGGGAATTTGTGGATGAACTTGCAAAATTGCAGGATAGAGTACCCGCATTTTCTCCTGAGAAGGCAAAGGCTTTCATAGAGAAAGAAATGGGTTGCCCAATTGAAGTTGTGTACAAGGAATTTGACAATCGTCCGATAGCTGCTGCCAGTCTTGGTCAGGTACATCGTGCAGTGCTTCACAATGGAGAGAGAGTTGCAGTTAAAGTGCAGCGACCAGGGCTCAGAAAACTTTTTGACATTGACCTAAGGAATCTAAAACTAGTAGCTGAGTATTTTCAGAGCAGTGAGGCATTTGGTGGTCCTTCAAGGGATTGGATTGGTATTTATGAGGAATGTTCCAAAATTTTGTATGAAGAAATTGATTACATCAATGAAGGAAAGAATGCTGACAGATTTCGCCGAGATTTCAGAAATATAAAGTGGGTCCGTGTGCCACTTATCATGTGGGACTACACAACTGAAAAGGTGTTAACCCTCGAGTATGTTCCTGGTATTAAGATAAACAACTTGACTTTGTTGGATAATCGGGGATATAGTCGTTCCCTGATTGCATCTCGTTCAATAGAATCTTATCTTATTCAGATACTGAAGACCGGTTTCTTCCATGCTGATCCGCATCCTGGAAACCTTGCTATAGACACGGATGGCTCTCTTATACATTATGATTTTGGAATGATGGGTGAAATAAAATCATTCACTCGGGAGAGATTACTTTCCTTGTTTTATGCTGTGTACGAGAAGGATGCAAATAAGGTTATGAAAGCTCTAATTGACCTAGAAGCCCTCCAGGCAACAGGAGACCTTTCACCGGTTAGAAGATCCATACAATTTTTCTTGGACAATCTGCTGAGTCAGACGCCAGACCAACAGCAAACTTTGGCTGCGATTGGAGAGGACTTGTTTGCAATATCACAGGATCAACCTTTTCGTTTCCCATCCACATTTACATTTGTCATAAGGGCATTCTCAACTCTTGAAGGGATTGGATATATATTGGATCCAGATTTTTCCTTTGTGAAAGTTGCCGCACCTTATGCACAGGAACTTCTAGACTTGAAACAGAGACGAACAAGTGCACCTGAACTAGTCCGGGAGATAAGAAAGCAAGCAAACAGTGCTCGTGACTCTACCATCTCAATGCCCTACAGAATACAGCGAATTGAGGATTTTGTTGGGCAACTTGAGTCCGGTGATCTGAAACTTAGAGTCAGAGTACTTGAGTCTGAAAGAGCTGCTAGTAAGGCGAATGTACTTCAAATGGCGACCATGTATACAGCCATTGGTGGCACGCTGTTGAACGTTGGGGTCACATTGAGTAGCCAAGGGAACCAAATAGTGGCAAACGGGTCTTTTGTTGGCGCAGGCATATTCTTGGCATTGCTCATAAGATCTATGCAGAGAGTGAAGAAACTCGACAAATTCGAGACAATGATATAATTGTCAACTTGTCATATCATTCCAATTGGCTTTGCTGGAAGCTCATAATCTGTACCAGAAGCATGGCAAGACAATACTCCCTCTATCCCAAAAAGTGTCCAACTCTAGGGATTAATATACACACACCCCCTGTCCTTGTCTAGATTCATCACTAGAGTTGAACTCTTTTTGGGATAGAGTGAATAGGTCACCTCTCTTTTATTCTGTAAAAAAATTACATGGGGGAGTTTATCCCTTTATAGCCATACATATATAGTTTGGTAGGAGATGCCATTCTTTTTTTTAGAAAAAAACAATGGAATCAACTTGTTACAGCCTGTAAATCTGTACAATTGTATCATTTTTGAGCCGTAAGGTCTCTCTCAGAAATGAAACGAAAT]
[+] EMBL OSS10535A [ AAAGTGGGTCCGTGTGCCACTTATCATGTGGGACTACACAACTGAAAAGGTGTTAACCCTCGAGTATGTTCCTGGTATTAAGATAAACAACTTGACTTTGTTGGATAATCGGGGATATAGTCGTTCCCTGATTGCATCTCGTTCAATAGAATCTTATCTTATTCAGATACTGAAGACCGGTTTCTTCCATGCTGATCCGCATCCTGGAAACCTTGCTATAGACACGGATGGCTCTCTTATATATTATGATTTTGGAATGATGGGTGAAATAAAATCATTCACTCGGGAGAGATTACTTTCCTTGTTTTATGCTGTGTACGAGAAGGATGC AATAAGGTTATGAAAGCTCTAATTGACCT ]
[+] EMBL OSS10688A [ AAAGTGGGTCCGTGTGCCACTTATCATGTGGGACTACACAACTGAAAAGGTGTTAACCCTCGAGTATGTTCCTGGTATTAAGATAAACAACTTGACTTTGTTGGATAATCGGGGATATAGTCGTTCCCTGATTGCATCTCGTTCAATAGAATCTTATCTTATTCAGATACTGAAGACCGGTTTCTTCCATNCTGATCCGCATCCTGGAAACCTTGCTATAGACACGGATGGNTCTCTTATATATTAng ]
consensusID : consensus_7579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence
[TNGAAAGAGNACGTGNCGTCCCCGGCGTNAACTTTGGGGTAAGNNCATATNCTNTNNCAGANTCANGGTANTACNGTACTCCCTCTATCCCATAAAGTGTCCAACTCTAGGGATTAATATACACACNCCCCCTGTCCTTGTCTAGATTCATCACTAGAGTTGAACTCTTTTTGGGATAGAGTGAATAGGTCACCTCTCTTTTATTCTGTAAAAAAATNNGGGGGGGGAGTTTATCCCTTTATAGCCATACATATATAGTTTGGTAGGAGATGCCATTCTTTTTTTTAGAAAAANANTNTGGAATCAACTTGTCACAGCCTGTAAATCTGTACAATTGTATCATTTTTGAGCCGTGGGGTCTCTCTCAAAAATGAAACGAAATCTA]
[+] EMBL AA751947 [TNGAAAGAGNACGTGNCGTCCCCGGCGTNAACTTTGGGGTAAGNNCATATNCTNTNNCAGANTCANGGTANTACNGTACTCCCTCTATCCCATAAAGTGTCCAACTCTAGGGATTAATATACACACNCCCCCTGTCCTTGTCTAGATTCATCACTAGAGTTGAACTCTTTTTGGGATAGAGTGAATAGGTCACCTCTCTTTTATTCTGTAAAAAAATNNGGGGGGGGAGTTTATCCCTTTATAGCCATACATATATAGTTTGGTAGGAGATGCCATTCTTTTTTTTAGAAAAANANTNTGGAATCAACTTGTCACAGCCTGTAAATCTGTACAATTGTATCATTTTTGAGCCGTGGGGTCTCTCTCAAAAATGAAACGAAATCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7579#0 AGCTCCAAAGGTTCAGGGCATCATCGAATGAGACATCTTTGATTAAGAGATCTCCGGTGT 60
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 TCCGTGCAGAAGCTCGGTCAACTGAAACTGAGAAATTCCGTACCAATGGCCGCGCGATAA 120
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 AGATGGTCCCGACAACAGAGTTGAAAAGGAGCAAGAGTGGTGTCCGAGTAAGGCCAGACA 180
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 CAGTTAATGGCTCTCCAAGTGGTGCTGTCAATGGCTCAACCAAGGTGGCCATCAATGGTT 240
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 CTCCTAATGCTGCTGTCAATGGTTCGATGAAAGCGGTAACTAATGGTTCTGTTAATGGGA 300
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 CTAGTTTGGTTAAAGGTAGCAATATGTCTGCTCTAGTGAAGACCCAAAAGCGAATGAGAC 360
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 CCAATGATGATCCCTTTGAAGAGGAGCTGAAGGTTTTGCCCTCTGATGAAGGATTCAGTT 420
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 GGGCAAAAGATAATTACAACTCGTGGCAGAGGAGTGCAGATATCTGGTCTTTTGTTCTTT 480
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 CTTTTCGAATCCGCGTTCTATTCGACAATGCCAAATGGGCCTACGCAGGTGGATTCTCGG 540
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 AGGAAAAACAGAAAGTTCGGAGGAGGAAAACTGCTTCATGGTTAAGAGAACAAGTATTGC 600
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 AGCTTGGCCCAACTTTTATTAAGCTTGGACAGTTATCTTCGACAAGATCTGATCTGTTTC 660
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 CAAGGGAATTTGTGGATGAACTTGCAAAATTGCAGGATAGAGTACCCGCATTTTCTCCTG 720
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 AGAAGGCAAAGGCTTTCATAGAGAAAGAAATGGGTTGCCCAATTGAAGTTGTGTACAAGG 780
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 AATTTGACAATCGTCCGATAGCTGCTGCCAGTCTTGGTCAGGTACATCGTGCAGTGCTTC 840
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 ACAATGGAGAGAGAGTTGCAGTTAAAGTGCAGCGACCAGGGCTCAGAAAACTTTTTGACA 900
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 TTGACCTAAGGAATCTAAAACTAGTAGCTGAGTATTTTCAGAGCAGTGAGGCATTTGGTG 960
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 GTCCTTCAAGGGATTGGATTGGTATTTATGAGGAATGTTCCAAAATTTTGTATGAAGAAA 1020
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 TTGATTACATCAATGAAGGAAAGAATGCTGACAGATTTCGCCGAGATTTCAGAAATATAA 1080
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 AGTGGGTCCGTGTGCCACTTATCATGTGGGACTACACAACTGAAAAGGTGTTAACCCTCG 1140
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 AGTATGTTCCTGGTATTAAGATAAACAACTTGACTTTGTTGGATAATCGGGGATATAGTC 1200
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 GTTCCCTGATTGCATCTCGTTCAATAGAATCTTATCTTATTCAGATACTGAAGACCGGTT 1260
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 TCTTCCATGCTGATCCGCATCCTGGAAACCTTGCTATAGACACGGATGGCTCTCTTATAT 1320
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 ATTATGATTTTGGAATGATGGGTGAAATAAAATCATTCACTCGGGAGAGATTACTTTCCT 1380
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 TGTTTTATGCTGTGTACGAGAAGGATGCAAATAAGGTTATGAAAGCTCTAATTGACCTAG 1440
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 AAGCCCTCCAGGCAACAGGAGACCTTTCACCGGTTAGAAGATCCATACAATTTTTCTTGG 1500
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 ACAATCTGCTGAGTCAGACGCCAGACCAACAGCAAACTTTGGCTGCGATTGGAGAGGACT 1560
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 TGTTTGCAATATCACAGGATCAACCTTTTCGTTTCCCATCCACATTTACATTTGTCATAA 1620
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 GGGCATTCTCAACTCTTGAAGGGATTGGATATATATTGGATCCAGATTTTTCCTTTGTGA 1680
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 AAGTTGCCGCACCTTATGCACAGGAACTTCTAGACTTGAAACAGAGACGAACAAGTGCAC 1740
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 CTGAACTAGTCCGGGAGATAAGAAAGCAAGCAAACAGTGCTCGTGACTCTACCATCTCAA 1800
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 TGCCCTACAGAATACAGCGAATTGAGGATTTTGTTGGGCAACTTGAGTCCGGTGATCTGA 1860
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 AACTTAGAGTCAGAGTACTTGAGTCTGAAAGAGCTGCTAGTAAGGCGAATGTACTTCAAA 1920
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 TGGCGACCATGTATACAGCCATTGGTGGCACGCTGTTGAACGTTGGGGTCACATTGAGTA 1980
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 GCCAAGGGAACCAAATAGTGGCAAACGGGTCTTTTGTTGGCGCAGGCATATTCTTGGCAT 2040
consensus_7579#1 ------------------------------------------------------------
consensus_7579#0 TGCTCATAAGATCTATGCAGAGAGTGAAGAAACTCGACAAATTCGAGACAATGATATAAT 2100
consensus_7579#1 -------------------------------------------------------TNGAA 5
*
consensus_7579#0 TGTCAACTTGTCATATCATTCCAATTGGCTTTGCTGGAAGCTCATAATCTGTACCAGAAG 2160
consensus_7579#1 AGAGNACGTGNCGTCCCCGGC--GTNAACTTTGGGGTAAGNNCATATNCTNTNNCAGANT 63
* ** ** * * * * * ***** * *** **** ** * ****
consensus_7579#0 CATGGCAAGACAATACTCCCTCTATCCCAAAAAGTGTCCAACTCTAGGGATTAATATACA 2220
consensus_7579#1 CANGGTANTACNGTACTCCCTCTATCCCATAAAGTGTCCAACTCTAGGGATTAATATACA 123
** ** * ** **************** ******************************
consensus_7579#0 CACACCCCCTGTCCTTGTCTAGATTCATCACTAGAGTTGAACTCTTTTTGGGATAGAGTG 2280
consensus_7579#1 CACNCCCCCTGTCCTTGTCTAGATTCATCACTAGAGTTGAACTCTTTTTGGGATAGAGTG 183
*** ********************************************************
consensus_7579#0 AATAGGTCACCTCTCTTTTATTCTGTAAAAAAATTACATGGGGGAGTTTATCCCTTTATA 2340
consensus_7579#1 AATAGGTCACCTCTCTTTTATTCTGTAAAAAAATNNGGGGGGGGAGTTTATCCCTTTATA 243
********************************** *********************
consensus_7579#0 GCCATACATATATAGTTTGGTAGGAGATGCCATTCTTTTTTTTAGAAAAAAACAATGGAA 2400
consensus_7579#1 GCCATACATATATAGTTTGGTAGGAGATGCCATTCTTTTTTTTAGAAAAANANTNTGGAA 303
************************************************** * *****
consensus_7579#0 TCAACTTGTTACAGCCTGTAAATCTGTACAATTGTATCATTTTTGAGCCGTAAGGTCTCT 2460
consensus_7579#1 TCAACTTGTCACAGCCTGTAAATCTGTACAATTGTATCATTTTTGAGCCGTGGGGTCTCT 363
********* ***************************************** *******
consensus_7579#0 CTCAGAAATGAAACGAAAT--- 2479
consensus_7579#1 CTCAAAAATGAAACGAAATCTA 385
**** **************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||