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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7582#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1611 fasta sequence
[GAGCCCCTTGTCTCCCTCTCCTCCGCCCACCCCACCGGCGATGGCACACGGCGGCGGCGAGGAAGAGGAGGAGCGGGTGCTGAGCCACGGCGACGTGGTGCTGCTCCGCTGCGACCTCACCATCCTCCGTGGCCCCCACTTCCTCAACGACCGCATCATCGCCTTCTACCTCGCCCACCTCGCCGCCGACCACCACGACGACGACCTACTCCTGCTTCCCCCCTCCGTCCCCTACCTCCTCTCCAACCTCCCCGACCCCGCCTCCGTCGCCGCCGTCGCCGACCCCCTCCGCCTCGCCTCCCGCCGCCTCGTCCTCCTCCCCGTCAACGACAACCCCGACGTCTCCCACGCCGAGGGCGGCTCCCACTGGACCCTCCTCGTCCTCGACAACTCCAACGCCGTCTCCGGCCCCCGCTTCGTCCACCACGACAGCCTCCCACCCACCAACCTGCCCTCCGCGCGCCGCCTCGCCGCCGTGCTCCGCCCGCTGCTCCCCGCCTCCGCGATCCCGCTCATCGAGGGCCCCACGCCCAGGCAGACAAACGGCTACGACTGCGGCGTCTTCGTGCTAGCGGTGGCCAGGGCCATCTGCAACTGGTGGCCCACCCGCGCCCGCCATTCCAATTCCGATTCCGATTGGTTGGAGGCCGTGAAGAGGGAGGTGAACGCCGACAGCGTCAAGGCCATGAGGACCCAGCTGCTGCAGCTCATCCATACCCTCATCCAAAACAACACCACCACCAACCAACATTCCCCTTCAACTCAACTTCCTTCTCACCCTTCGATTGCATCTACCAGTCTGCCTGTCACAGCACAAGACTTTGGGACTTGGCTAGAAGACAGTGGAACACATACAGCATACGATCAAAAGAAAGCAGATACAGGAAAGGGGGCCTGTTGGGACAATTTGACAGTGTCCCAGAGTGTCAGGAAGCCAAATGTCAGTGCGAAGAACAGTTTGTCCTACGATGGCTACAGCTGGAGGAAGTATGGGCAGAAGCAAGTGAAAGGGAGCGAGTTCCCACGGAGCTACTACAAGTGCACTCACCCAACATGCCCTGTCAAGAGAAAGGTGGAGATGACACCAGATGGCCGGATTGCTGAAATTGTATACAACGGTGAGCACAACCACCCCAAACCTCATCCTCCAAGAAAGCCAACATTATCAACAAGTGTGGAGACTCTGGTTGCCACTAATGATGCTGGATTAGAAAACAAGTTAGAAGGATGTGACCAAGCTATTGGTTCTGATGCTGTTGTTGAAGCATTAAGAGGTGGCTGTCACTGCTTGGATGGATTTAGAAATGGTAATGAGATCAGTGACTGCAAGAAAAGGTATGCTTATGCTGTAATTTTCATTCAGAACTTACTAATGTTTTTTTGTGCCAAAAATGTGCAAGTGGTTGCTTAAAATATCAAGTAGCATATTATGATATTTACGTTACAGACCCACAGCCTCCTTGGAGGACACTCTTAGATGATTGCTGTGAAATTGTCGTGTGCCTAGGCTTTTCCGTTTTGGAGTGAGATTTCATGATGGTTCATGTAAGAGAATTCTGGCACAACCGCATAATATAATTAATTTAGGGTCACATTTGGTAGCTGAATATG]
[+] EMBL AY341860 [GAGCCCCTTGTCTCCCTCTCCTCCGCCCACCCCACCGGCGATGGCACACGGCGGCGGCGAGGAAGAGGAGGAGCGGGTGCTGAGCCACGGCGACGTGGTGCTGCTCCGCTGCGACCTCACCATCCTCCGTGGCCCCCACTTCCTCAACGACCGCATCATCGCCTTCTACCTCGCCCACCTCGCCGCCGACCACCACGACGACGACCTACTCCTGCTTCCCCCCTCCGTCCCCTACCTCCTCTCCAACCTCCCCGACCCCGCCTCCGTCGCCGCCGTCGCCGACCCCCTCCGCCTCGCCTCCCGCCGCCTCGTCCTCCTCCCCGTCAACGACAACCCCGACGTCTCCCACGCCGAGGGCGGCTCCCACTGGACCCTCCTCGTCCTCGACAACTCCAACGCCGTCTCCGGCCCCCGCTTCGTCCACCACGACAGCCTCCCACCCACCAACCTGCCCTCCGCGCGCCGCCTCGCCGCCGTGCTCCGCCCGCTGCTCCCCGCCTCCGCGATCCCGCTCATCGAGGGCCCCACGCCCAGGCAGACAAACGGCTACGACTGCGGCGTCTTCGTGCTAGCGGTGGCCAGGGCCATCTGCAACTGGTGGCCCACCCGCGCCCGCCATTCCAATTCCGATTCCGATTGGTTGGAGGCCGTGAAGAGGGAGGTGAACGCCGACAGCGTCAAGGCCATGAGGACCCAGCTGCTGCAGCTCATCCATACCCTCATCCAAAACAACACCACCACCAACCAACATTCCCCTTCAACTCAACTTCCTTCTCACCCTTCGATTGCATCTACCAGTCTGCCTGTCACAGCACAAGACTTTGGGACTTGGCTAGAAGACAGTGGAACACATACAGCATACGATCAAAAGAAAGCAGATACAGGAAAGGGGGCCTGTTGGGACAATTTGACAGTGTCCCAGAGTGTCAGGAAGCCAAATGTCAGTGCGAAGAACAGTTTGTCCTACGATGGCTACAGCTGGAGGAAGTATGGGCAGAAGCAAGTGAAAGGGAGCGAGTTCCCACGGAGCTACTACAAGTGCACTCACCCAACATGCCCTGTCAAGAGAAAGGTGGAGATGACACCAGATGGCCGGATTGCTGAAATTGTATACAACGGTGAGCACAACCACCCCAAACCTCATCCTCCAAGAAAGCCAACATTATCAACAAGTGTGGAGACTCTGGTTGCCACTAATGATGCTGGATTAGAAAACAAGTTAGAAGGATGTGACCAAGCTATTGGTTCTGATGCTGTTGTTGAAGCATTAAGAGGTGGCTGTCACTGCTTGGATGGATTTAGAAATGGTAATGAGATCAGTGACTGCAAGAAAAGGTATGCTTATGCTGTAATTTTCATTCAGAACTTACTAATGTTTTTTTGTGCCAAAAATGTGCAAGTGGTTGCTTAAAATATCAAGTAGCATATTATGATATTTACGTTACAGACCCACAGCCTCCTTGGAGGACACTCTTAGATGATTGCTGTGAAATTGTCGTGTGCCTAGGCTTTTCCGTTTTGGAGTGAGATTTCATGATGGTTCATGTAAGAGAATTCTGGCACAACCGCATAATATAATTAATTTAGGGTCACATTTGGTAGCTGAATATG]
consensusID : consensus_7582#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 932 fasta sequence
[CACCCCACCGGCGATGGCACACGGCGGCGGCGAGGAAGAGGAGGAGCGGGTGCTGAGCCACGGCGACGTGGTGCTGCTCCGCTGCGACCTCACCATCCTCCGTGGCCCCCACTTCCTCAACGACCGCATCATCGCCTTCTACCTCGCCCACCTCGCCGCCGACCACCACGACGACGACCTACTCCTGCTTCCCCCCTCCGTCCCCTACCTCCTCTCCAACCTCCCCGACCCCGCCTCCGTCGCCGCCGTCGCCGACCCCCTCCGCCTCGCCTCCCGCCGCCTCGTCCTCCTCCCCGTCAACGACAACCCCGACGTCTCCCACGCCGAGGGCGGCTCCCACTGGACCCTCCTCGTCCTCGACAACTCCAACGCCGTCTCCGGCCCCCGCTTCGTCCACCACGACAGCCTCCCACCCACCAACCTGCCCTCCGCGCGCCGCCTCGCCGCCGTGCTCCGCCCGCTGCTCCCCGCCTCCGCGATCCCGCTCATCGAGGGCCCCACGCCCAGGCAGACAAACGGCTACGACTGCGGCGTCTTCGTGCTAGCGGTGGCCAGGGCCATCTGCAACTGGTGGCCCACCCGCGCCCGCCATTCCAATTCCGATTCCGATTGGTTGGAGGCCGTGAAGAGGGAGGTGAACGCCGACAGCGTCAAGGCCATGAGGACCCAGCTGCTGCAGCTCATCCATACCCTCATCCAAAACAACACCACCACCAACCAACATTCGTGCTAGCTAGCTGTTGCTCTTTCACAACTTATTTGTAGTCTTCGTGTTCTTACTGATATTATATATATGGTTTTCTGTGAGCACAGCAAGAACAACATGTACAAATAGAACAGGTCTTGTGTAGTAATCTTTTTGCAGAATTTTGGGGTCCAAATACTCTTTACTGTTGGTTATGGTTAATGAAACAATGCTATTGTGCCTATTG]
[+] EMBL AK061799 [CACCCCACCGGCGATGGCACACGGCGGCGGCGAGGAAGAGGAGGAGCGGGTGCTGAGCCACGGCGACGTGGTGCTGCTCCGCTGCGACCTCACCATCCTCCGTGGCCCCCACTTCCTCAACGACCGCATCATCGCCTTCTACCTCGCCCACCTCGCCGCCGACCACCACGACGACGACCTACTCCTGCTTCCCCCCTCCGTCCCCTACCTCCTCTCCAACCTCCCCGACCCCGCCTCCGTCGCCGCCGTCGCCGACCCCCTCCGCCTCGCCTCCCGCCGCCTCGTCCTCCTCCCCGTCAACGACAACCCCGACGTCTCCCACGCCGAGGGCGGCTCCCACTGGACCCTCCTCGTCCTCGACAACTCCAACGCCGTCTCCGGCCCCCGCTTCGTCCACCACGACAGCCTCCCACCCACCAACCTGCCCTCCGCGCGCCGCCTCGCCGCCGTGCTCCGCCCGCTGCTCCCCGCCTCCGCGATCCCGCTCATCGAGGGCCCCACGCCCAGGCAGACAAACGGCTACGACTGCGGCGTCTTCGTGCTAGCGGTGGCCAGGGCCATCTGCAACTGGTGGCCCACCCGCGCCCGCCATTCCAATTCCGATTCCGATTGGTTGGAGGCCGTGAAGAGGGAGGTGAACGCCGACAGCGTCAAGGCCATGAGGACCCAGCTGCTGCAGCTCATCCATACCCTCATCCAAAACAACACCACCACCAACCAACATTCGTGCTAGCTAGCTGTTGCTCTTTCACAACTTATTTGTAGTCTTCGTGTTCTTACTGATATTATATATATGGTTTTCTGTGAGCACAGCAAGAACAACATGTACAAATAGAACAGGTCTTGTGTAGTAATCTTTTTGCAGAATTTTGGGGTCCAAATACTCTTTACTGTTGGTTATGGTTAATGAAACAATGCTATTGTGCCTATT ]
[+] EMBL AK120376 [ CCTGCTTCCCCCCTCCATCCCCTACCTCCTCTCCAACCTCCCCGACCCCGCCTCCGTCGCCGCCGTCGCCGATCCCCTCCGCCTCGCCTCCCGCCGCCTTGTCCTCCTCCCCGTCAACGACAACCCCGACGTCTCCCACGCCGAGGGCGGCTCCCACTGGACCCTCCTTGTCCTCGACAACTCCAACGCCGTCTCCGGCCCCCGCTTCGTCCACCACGACAGCCTCCCACCCACCAACCTGCCCTCCGCGCGCCGCCTCGCCGCCGTGCTCCGCCCGCTGCTCCCCGCCTCCGCGATCCCGCTCATCGAGGGCCCCACGCCCAGGCAGACAAACGGCTACGACTGCGGCGTCTTCGTGCTAGCGGTGGCCAGGGCCATCTGCAACTGGTGGCCCACCCGCGCCCGCCATTCCAATTCCGATTCCGATTGGTTGGAGGCCGTGAAGAGGGAGGTGAACGCCGACAGCGTCAAGGCCATGAGGACCCAGCTGCTGCAGCTCATCCATACCCTCATCCAAAACAACACCACCACCAACCAACATTCGTGCTAGCTAGCTGTTGCTCTTTCACAACTTATTTGTAGTCTTCGTGTTCTTACTGATATTATATATATGGTTTTCTGTGAGCACAGCAAGAACAACATGTACAAATAGAACAGGTCTTGTGTAGTAATCTTTTTGCAGAATTTTGGGGTCCAAATACTCTTTACTGTTGGTTATGGTTAATGAAACAATGC ]
[+] EMBL AU225380 [ gccgctGCCGTGAAGAGGGAGGTGAACGCCGACAGCGTCAAGGCCATGAGGACCCAGCTGCTGCAGCTCATCCATACCCTCATCCAAAACAACACCACCACCAACCAACATTCGTGCTAGCTAGCTGTTGCTCTTTCACAACTTATTTGTAGTCTTCGTGTTCTTACTGATATTATATATATGGTTTTCTGTGAGCACAGCAAGAACAACATGTACAAATAGAACAGGTCTTGTGTAGTAATCTTTTTGCAGAATTTTGGGGTCCAAATACTCTTTACTGTTGGTTATGGTTAATGAAACAATGCTATTGTGCCagcgg]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7582#0 GAGCCCCTTGTCTCCCTCTCCTCCGCCCACCCCACCGGCGATGGCACACGGCGGCGGCGA 60
consensus_7582#1 ---------------------------CACCCCACCGGCGATGGCACACGGCGGCGGCGA 33
*********************************
consensus_7582#0 GGAAGAGGAGGAGCGGGTGCTGAGCCACGGCGACGTGGTGCTGCTCCGCTGCGACCTCAC 120
consensus_7582#1 GGAAGAGGAGGAGCGGGTGCTGAGCCACGGCGACGTGGTGCTGCTCCGCTGCGACCTCAC 93
************************************************************
consensus_7582#0 CATCCTCCGTGGCCCCCACTTCCTCAACGACCGCATCATCGCCTTCTACCTCGCCCACCT 180
consensus_7582#1 CATCCTCCGTGGCCCCCACTTCCTCAACGACCGCATCATCGCCTTCTACCTCGCCCACCT 153
************************************************************
consensus_7582#0 CGCCGCCGACCACCACGACGACGACCTACTCCTGCTTCCCCCCTCCGTCCCCTACCTCCT 240
consensus_7582#1 CGCCGCCGACCACCACGACGACGACCTACTCCTGCTTCCCCCCTCCGTCCCCTACCTCCT 213
************************************************************
consensus_7582#0 CTCCAACCTCCCCGACCCCGCCTCCGTCGCCGCCGTCGCCGACCCCCTCCGCCTCGCCTC 300
consensus_7582#1 CTCCAACCTCCCCGACCCCGCCTCCGTCGCCGCCGTCGCCGACCCCCTCCGCCTCGCCTC 273
************************************************************
consensus_7582#0 CCGCCGCCTCGTCCTCCTCCCCGTCAACGACAACCCCGACGTCTCCCACGCCGAGGGCGG 360
consensus_7582#1 CCGCCGCCTCGTCCTCCTCCCCGTCAACGACAACCCCGACGTCTCCCACGCCGAGGGCGG 333
************************************************************
consensus_7582#0 CTCCCACTGGACCCTCCTCGTCCTCGACAACTCCAACGCCGTCTCCGGCCCCCGCTTCGT 420
consensus_7582#1 CTCCCACTGGACCCTCCTCGTCCTCGACAACTCCAACGCCGTCTCCGGCCCCCGCTTCGT 393
************************************************************
consensus_7582#0 CCACCACGACAGCCTCCCACCCACCAACCTGCCCTCCGCGCGCCGCCTCGCCGCCGTGCT 480
consensus_7582#1 CCACCACGACAGCCTCCCACCCACCAACCTGCCCTCCGCGCGCCGCCTCGCCGCCGTGCT 453
************************************************************
consensus_7582#0 CCGCCCGCTGCTCCCCGCCTCCGCGATCCCGCTCATCGAGGGCCCCACGCCCAGGCAGAC 540
consensus_7582#1 CCGCCCGCTGCTCCCCGCCTCCGCGATCCCGCTCATCGAGGGCCCCACGCCCAGGCAGAC 513
************************************************************
consensus_7582#0 AAACGGCTACGACTGCGGCGTCTTCGTGCTAGCGGTGGCCAGGGCCATCTGCAACTGGTG 600
consensus_7582#1 AAACGGCTACGACTGCGGCGTCTTCGTGCTAGCGGTGGCCAGGGCCATCTGCAACTGGTG 573
************************************************************
consensus_7582#0 GCCCACCCGCGCCCGCCATTCCAATTCCGATTCCGATTGGTTGGAGGCCGTGAAGAGGGA 660
consensus_7582#1 GCCCACCCGCGCCCGCCATTCCAATTCCGATTCCGATTGGTTGGAGGCCGTGAAGAGGGA 633
************************************************************
consensus_7582#0 GGTGAACGCCGACAGCGTCAAGGCCATGAGGACCCAGCTGCTGCAGCTCATCCATACCCT 720
consensus_7582#1 GGTGAACGCCGACAGCGTCAAGGCCATGAGGACCCAGCTGCTGCAGCTCATCCATACCCT 693
************************************************************
consensus_7582#0 CATCCAAAACAACACCACCACCAACCAACATTCCCCTTCAACT--CAACTTCCTTCTCAC 778
consensus_7582#1 CATCCAAAACAACACCACCACCAACCAACATTCGTGCT-AGCTAGCTGTTGCTCTTTCAC 752
********************************* * * ** * * * * ****
consensus_7582#0 CCTTCGATTGCATCTACCAGTCTGCCTGTCACAGCACAAGACTTTGGGACTTGGCTAGAA 838
consensus_7582#1 AACTTATTTGTA-------GTCTTCGTGTTCT--TACTGATATTATATATATGGTTTTCT 803
* *** * **** * *** ** ** * *** *
consensus_7582#0 GACAGTGGAACACATACAGCATACGATCAAAAGAAAGCAGATACAGGAAAGGGGGCCTGT 898
consensus_7582#1 GTGAGCACAGCAAGAACAACATGTAC---AAATAGAACAGGTCTTGTGTAGTAATCTTTT 860
* ** * ** *** *** *** * * *** * * ** * * *
consensus_7582#0 TGGGACAATTTGACAGTGTCCCAGAGTGTCAGGAAGCCAAATGTCAGTGCGAAGAACAGT 958
consensus_7582#1 TGCAGAATTTTG---GGGTCCAAATACTCTTTACTGTTGGTTAT-GGTTAATGAAACAA- 915
** * **** * **** * * * * ** ****
consensus_7582#0 TTGTCCTACGATGGCTACAGCTGGAGGAAGTATGGGCAGAAGCAAGTGAAAGGGAGCGAG 1018
consensus_7582#1 ---TGCTATTGTGCCTATTG---------------------------------------- 932
* *** ** *** *
consensus_7582#0 TTCCCACGGAGCTACTACAAGTGCACTCACCCAACATGCCCTGTCAAGAGAAAGGTGGAG 1078
consensus_7582#1 ------------------------------------------------------------
consensus_7582#0 ATGACACCAGATGGCCGGATTGCTGAAATTGTATACAACGGTGAGCACAACCACCCCAAA 1138
consensus_7582#1 ------------------------------------------------------------
consensus_7582#0 CCTCATCCTCCAAGAAAGCCAACATTATCAACAAGTGTGGAGACTCTGGTTGCCACTAAT 1198
consensus_7582#1 ------------------------------------------------------------
consensus_7582#0 GATGCTGGATTAGAAAACAAGTTAGAAGGATGTGACCAAGCTATTGGTTCTGATGCTGTT 1258
consensus_7582#1 ------------------------------------------------------------
consensus_7582#0 GTTGAAGCATTAAGAGGTGGCTGTCACTGCTTGGATGGATTTAGAAATGGTAATGAGATC 1318
consensus_7582#1 ------------------------------------------------------------
consensus_7582#0 AGTGACTGCAAGAAAAGGTATGCTTATGCTGTAATTTTCATTCAGAACTTACTAATGTTT 1378
consensus_7582#1 ------------------------------------------------------------
consensus_7582#0 TTTTGTGCCAAAAATGTGCAAGTGGTTGCTTAAAATATCAAGTAGCATATTATGATATTT 1438
consensus_7582#1 ------------------------------------------------------------
consensus_7582#0 ACGTTACAGACCCACAGCCTCCTTGGAGGACACTCTTAGATGATTGCTGTGAAATTGTCG 1498
consensus_7582#1 ------------------------------------------------------------
consensus_7582#0 TGTGCCTAGGCTTTTCCGTTTTGGAGTGAGATTTCATGATGGTTCATGTAAGAGAATTCT 1558
consensus_7582#1 ------------------------------------------------------------
consensus_7582#0 GGCACAACCGCATAATATAATTAATTTAGGGTCACATTTGGTAGCTGAATATG 1611
consensus_7582#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||