These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1669 fasta sequence [GCCGTCTCCGCCTCCGCCTTCGCCATCGCCTAATCCTCACCTCACCTCCGCCATTTTCACTGCGGGCTTCCGCTTCCGAGCTCGAAGGCGAGCGCCACCGCGAGGAGGGGGGGCTAGGGTTTTGGGGTTGTCGCGTCGTGGGGGACGGGATGGGGTACCTCCTCCTCGCGCCGTCGCCGGCGCCGCGGCCGCTCGCGTTCCGGTGCCGCCGAGGAGGCCGCGCGCGGAGAGGCGCGGCCATCGTCGCGTCGAGCTCGGCGTCGTCGTCGTCGTCGTCCGGTGATGCCGGCCCATCCCACTCGGCGGCGGCGGCGGGGGCGTACGTGCTGGCGCGGCGGGGCGTGCTCCTCGGCGTCTCGGCGCTCCCGCTCCTCCGCGCCAGGGAAGCCGCGGCGGCGGCCGCGGTGGCCACGCCTAACAGCGGGGATCTCGCAACGGAGACAAAGGATATTCAAAAGCCTGATGAACCTCAGCCTGGGGAAACTCAGGCTGAATCTCCTCTACCTGAAGCTTTGCAACCAGAATCATCCCTGCCCGTCACGCAAGAACAAACTCCTGGGAATCCACTTTCTGGTCTTTTGAATGCAATTGCAGTTGCTGCCTCCGGTGTTCTTGCTGGACTGTATGGCACTTCTCAACAGGAAAAGAAGGCCCTGGAATCCGTCGTCTCATCTATGGAGAGCAAACTGGCTGAAAATGAGGCAGCAATCTCATTGATGAGGGAAAACTACGAGAAAAGATTGCTGGATCAACAAACAGCACAAAAGAAGCAAGCAATGAAGTTTCAGGAGCAGGAAGCCTCTCTTTTAGATCAGTTGTCTTCAACAAAAAAGACGGTAACTTCGCTAAGTGAAGAATTCAGAAGGGAGAAGACACTGGCTGAGGAGCTTAGGGAAGAAATACGTCGACTAGAGAGCAGTCTTGCACAAGCTGGGGATGACAAAGATGTTCTTGAAGCCAAACTGAAGGAAAAGTTGGGTGATGTCAACATTTTGCAGGAAAAAGTAAGTTTGCTTAGCCAAGAAATTGATAATAAGGGTATACGCATCAGGGAACTCAGTTCATTACTTTCGTCAAAGGAAGCAGACTACCGTAATCTGTGCTCTTTCTCTGACCAAACTAAAGAGAGTCTAGAACTTGCAGAAGCTAAAATACAGCAACTGGAGGAAGAGGTTCATAGAACTAGAAATGATCTTTCTTCTAAGATATCTTCAATTGATTTACTGAATGAGGAACTTCAAGCACTGAACTCTGCAAAGAATGAAGCTGAGGAAAAGCTAAGTGAGTTAACAAAAGATTATACAGACCTGAAGGCTTCTTCTGAAGCAAGAGAGAGCCGCAACTCTGAGCTACTATTAGAAAAAGATAATATGATCAAACAGCTTGATGGAAAACTCTCTGATGCATTAAGTGATTCTAGCAAAGACCGTGAGAACATCGCTGCGCTGAACAAGGAATTGGATGCAACAAAAGCAATGCTAGAGAATGAAGTTGCTGCAGTTAAAAGTTTAAGAGAATCACTTCAATCCACAGAGGAGGCACTGACAGATTCCAGAAGTGAGGTATCCAAACTTTCAGTGGAACTTGATGAAGCAAATAGAATGAACCAGGACCTGGTGCTGCAAATTTCTAAACTCCAGGATGAGTTCAATGAAATGCAAGAGGGCCT] [+] EMBL AK120377 [GCCGTCTCCGCCTCCGCCTTCGCCATCGCCTAATCCTCACCTCACCTCCGCCATTTTCACTGCGGGCTTCCGCTTCCGAGCTCGAAGGCGAGCGCCACCGCGAGGAGGGGGGGCTAGGGTTTTGGGGTTGTCGCGTCGTGGGGGACGGGATGGGGTACCTCCTCCTCGCGCCGTCGCCGGCGCCGCGGCCGCTCGCGTTCCGGTGCCGCCGAGGAGGCCGCGCGCGGAGAGGCGCGGCCATCGTCGCGTCGAGCTCGGCGTCGTCGTCGTCGTCGTCCGGTGATGCCGGCCCATCCCACTCGGCGGCGGCGGCGGGGGCGTACGTGCTGGCGCGGCGGGGCGTGCTCCTCGGCGTCTCGGCGCTCCCGCTCCTCCGCGCCAGGGAAGCCGCGGCGGCGGCCGCGGTGGCCACGCCTAACAGCGGGGATCTCGCAACGGAGACAAAGGATATTCAAAAGCCTGATGAACCTCAGCCTGGGGAAACTCAGGCTGAATCTCCTCTACCTGAAGCTTTGCAACCAGAATCATCCCTGCCCGTCACGCAAGAACAAACTCCTGGGAATCCACTTTCTGGTCTTTTGAATGCAATTGCAGTTGCTGCCTCCGGTGTTCTTGCTGGACTGTATGGCACTTCTCAACAGGAAAAGAAGGCCCTGGAATCCGTCGTCTCATCTATGGAGAGCAAACTGGCTGAAAATGAGGCAGCAATCTCATTGATGAGGGAAAACTACGAGAAAAGATTGCTGGATCAACAAACAGCACAAAAGAAGCAAGCAATGAAGTTTCAGGAGCAGGAAGCCTCTCTTTTAGATCAGTTGTCTTCAACAAAAAAGACGGTAACTTCGCTAAGTGAAGAATTCAGAAGGGAGAAGACACTGGCTGAGGAGCTTAGGGAAGAAATACGTCGACTAGAGAGCAGTCTTGCACAAGCTGGGGATGACAAAGATGTTCTTGAAGCCAAACTGAAGGAAAAGTTGGGTGATGTCAACATTTTGCAGGAAAAAGTAAGTTTGCTTAGCCAAGAAATTGATAATAAGGGTATACGCATCAGGGAACTCAGTTCATTACTTTCGTCAAAGGAAGCAGACTACCGTAATCTGTGCTCTTTCTCTGACCAAACTAAAGAGAGTCTAGAACTTGCAGAAGCTAAAATACAGCAACTGGAGGAAGAGGTTCATAGAACTAGAAATGATCTTTCTTCTAAGATATCTTCAATTGATTTACTGAATGAGGAACTTCAAGCACTGAACTCTGCAAAGAATGAAGCTGAGGAAAAGCTAAGTGAGTTAACAAAAGATTATACAGACCTGAAGGCTTCTTCTGAAGCAAGAGAGAGCCGCAACTCTGAGCTACTATTAGAAAAAGATAATATGATCAAACAGCTTGATGGAAAACTCTCTGATGCATTAAGTGATTCTAGCAAAGACCGTGAGAACATCGCTGCGCTGAACAAGGAATTGGATGCAACAAAAGCAATGCTAGAGAATGAAGTTGCTGCAGTTAAAAGTTTAAGAGAATCACTTCAATCCACAGAGGAGGCACTGACAGATTCCAGAAGTGAGGTATCCAAACTTTCAGTGGAACTTGATGAAGCAAATAGAATGAACCAGGACCTGGTGCTGCAAATTTCTAAACTCCAGGATGAGTTCAATGAAATGCAAGAGGGCCT] [+] EMBL CF326685 [ AATCATCCCTGCCCGTCACGCAAGAACAAACTCCTGGGAATCCACTTTCTGGTCTTTTGAATGCAATTGCAGTTGCTGCCTCCGGTGTTCTTGCTGGACTGTATGGCACTTCTCAACAGGAAAAGAAGGCCCTGTATTCCGTCGTCTCATCTATGGAGAGCAAACTGGCTGAAAATGAGGCAGCAATCTCATTGATGAGGGAAAACTACGAGAAAAGATTGCTGGATCAACAAACAGCACAAAAGAAGCAAGCAATGAAGTTTCAGGAGCAGGAAGCCTCTCTTTTAGATCAGTTGTCTTCAACAAAAAAGACGGTAACTTCGCTAAGTGAAGAATTCAGAAGGGAGAAGACACTGGCTGAGGAGCTTAGGGAAGAAATACGTCGACTAGAGAGCAGTCTTGCACAAGCTGGGGATGACAAAGATGTTCTTGAAGCCAAACTGAAGGAAAAGTTGGGTGATGTCAACATTTTGCAGGAAAAAGTAAGTTTGCTTAGCCAAGAAATTGATAATAAGGGTATACGCATCAGGGAACTCAGTTCATTACTTTCGTCAAAGGAAGCAGACTACCGTAATCTGTGCTCTTTCTCTGACCAAACTAAAGAGAGTCTAGAACTTGCAGAAGCTAAAATACAGCAACTGGAGGAAGAGGTTCATAGAACTAGAA ] [+] EMBL BE530942 [ AAAAAGATAATATGATCAAACAGCTTGATGGAAAACTCTCTGATGCATTAAGTGATTCTAGCAAAGACCGTGAGATCATCGCTGCGCTGAACAAGGAATTGGATGCAACAAAAGCAATGCTAGAGAATGAAGTTGCTGCAGTTAAAAGTTTAAGAGAATCACTTCAATCCACAGAGGAGGCACTGACAGATTCCAGAAGTGAGGTATCCAAACTTTCAGTGGAACTTGATGAAGCAAATAGAATGAACCAGGACCTGGTGCTGCAAATTTCTAAACTCCAGGATGAGTTCAATGAAATGCAAGAGGGCCT] consensusID : consensus_7583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence [TTCAAAAGCCTGATGAACCTCAGCCTGGTTGAAACTCAGGCTGAATCTCCTCTACCTGAAGCTTTGCAACCAGAATCATCCCTGCCCGTCACGCAAGCACCCAACACTCCCTGGTGCAATCCCACTTTCTTGGTCTTTTTGAATGCCATTGCCAGTTGCTGCCTCCGTGATGTTCTTGCTTGGCACTGTCATGGCACTTCTCAACAAGAACAAGCAAGGCCCTGGGAATCCGTCGTCTCCATCTATGGAGAGCAAACTGGG] [-] EMBL BI811480 [TTCAAAAGCCTGATGAACCTCAGCCTGGTTGAAACTCAGGCTGAATCTCCTCTACCTGAAGCTTTGCAACCAGAATCATCCCTGCCCGTCACGCAAGCACCCAACACTCCCTGGTGCAATCCCACTTTCTTGGTCTTTTTGAATGCCATTGCCAGTTGCTGCCTCCGTGATGTTCTTGCTTGGCACTGTCATGGCACTTCTCAACAAGAACAAGCAAGGCCCTGGGAATCCGTCGTCTCCATCTATGGAGAGCAAACTGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7583#0 GCCGTCTCCGCCTCCGCCTTCGCCATCGCCTAATCCTCACCTCACCTCCGCCATTTTCAC 60 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 TGCGGGCTTCCGCTTCCGAGCTCGAAGGCGAGCGCCACCGCGAGGAGGGGGGGCTAGGGT 120 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 TTTGGGGTTGTCGCGTCGTGGGGGACGGGATGGGGTACCTCCTCCTCGCGCCGTCGCCGG 180 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 CGCCGCGGCCGCTCGCGTTCCGGTGCCGCCGAGGAGGCCGCGCGCGGAGAGGCGCGGCCA 240 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 TCGTCGCGTCGAGCTCGGCGTCGTCGTCGTCGTCGTCCGGTGATGCCGGCCCATCCCACT 300 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 CGGCGGCGGCGGCGGGGGCGTACGTGCTGGCGCGGCGGGGCGTGCTCCTCGGCGTCTCGG 360 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 CGCTCCCGCTCCTCCGCGCCAGGGAAGCCGCGGCGGCGGCCGCGGTGGCCACGCCTAACA 420 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 GCGGGGATCTCGCAACGGAGACAAAGGATATTCAAAAGCCTGATGAACCTCAGCCTGGG- 479 consensus_7583#1 ------------------------------TTCAAAAGCCTGATGAACCTCAGCCTGGTT 30 **************************** consensus_7583#0 GAAACTCAGGCTGAATCTCCTCTACCTGAAGCTTTGCAACCAGAATCATCCCTGCCCGTC 539 consensus_7583#1 GAAACTCAGGCTGAATCTCCTCTACCTGAAGCTTTGCAACCAGAATCATCCCTGCCCGTC 90 ************************************************************ consensus_7583#0 ACGCAAGAAC---AAACTCCTGGG----AATCCACTTTCT-GGTCTTTT-GAATGCAATT 590 consensus_7583#1 ACGCAAGCACCCAACACTCCCTGGTGCAATCCCACTTTCTTGGTCTTTTTGAATGCCATT 150 ******* ** * ***** ** * ********* ******** ****** *** consensus_7583#0 GC-AGTTGCTGCCTCCG--GTGTTCTTGCTGG--ACTGT-ATGGCACTTCTCAACAGGAA 644 consensus_7583#1 GCCAGTTGCTGCCTCCGTGATGTTCTTGCTTGGCACTGTCATGGCACTTCTCAACAAGAA 210 ** ************** ********** * ***** **************** *** consensus_7583#0 AAG--AAGGCCCTGG-AATCCGTCGTCTC-ATCTATGGAGAGCAAACTGGCTGAAAATGA 700 consensus_7583#1 CAAGCAAGGCCCTGGGAATCCGTCGTCTCCATCTATGGAGAGCAAACTGGG--------- 261 * ********** ************* ******************** consensus_7583#0 GGCAGCAATCTCATTGATGAGGGAAAACTACGAGAAAAGATTGCTGGATCAACAAACAGC 760 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 ACAAAAGAAGCAAGCAATGAAGTTTCAGGAGCAGGAAGCCTCTCTTTTAGATCAGTTGTC 820 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 TTCAACAAAAAAGACGGTAACTTCGCTAAGTGAAGAATTCAGAAGGGAGAAGACACTGGC 880 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 TGAGGAGCTTAGGGAAGAAATACGTCGACTAGAGAGCAGTCTTGCACAAGCTGGGGATGA 940 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 CAAAGATGTTCTTGAAGCCAAACTGAAGGAAAAGTTGGGTGATGTCAACATTTTGCAGGA 1000 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 AAAAGTAAGTTTGCTTAGCCAAGAAATTGATAATAAGGGTATACGCATCAGGGAACTCAG 1060 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 TTCATTACTTTCGTCAAAGGAAGCAGACTACCGTAATCTGTGCTCTTTCTCTGACCAAAC 1120 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 TAAAGAGAGTCTAGAACTTGCAGAAGCTAAAATACAGCAACTGGAGGAAGAGGTTCATAG 1180 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 AACTAGAAATGATCTTTCTTCTAAGATATCTTCAATTGATTTACTGAATGAGGAACTTCA 1240 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 AGCACTGAACTCTGCAAAGAATGAAGCTGAGGAAAAGCTAAGTGAGTTAACAAAAGATTA 1300 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 TACAGACCTGAAGGCTTCTTCTGAAGCAAGAGAGAGCCGCAACTCTGAGCTACTATTAGA 1360 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 AAAAGATAATATGATCAAACAGCTTGATGGAAAACTCTCTGATGCATTAAGTGATTCTAG 1420 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 CAAAGACCGTGAGAACATCGCTGCGCTGAACAAGGAATTGGATGCAACAAAAGCAATGCT 1480 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 AGAGAATGAAGTTGCTGCAGTTAAAAGTTTAAGAGAATCACTTCAATCCACAGAGGAGGC 1540 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 ACTGACAGATTCCAGAAGTGAGGTATCCAAACTTTCAGTGGAACTTGATGAAGCAAATAG 1600 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 AATGAACCAGGACCTGGTGCTGCAAATTTCTAAACTCCAGGATGAGTTCAATGAAATGCA 1660 consensus_7583#1 ------------------------------------------------------------ consensus_7583#0 AGAGGGCCT 1669 consensus_7583#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||