These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7598#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1039 fasta sequence [AGTGCACAACCCAAGCTGCTTATTAGCAAGATCATTTAGCCTCCAAAGCTTAATCAAGATTCAGGCCATCTGACCTGATACAATAATGGCATCCTCCATCTTGCTCCTGGTGGTGCTTGCAGTAGTGTCAGCTCCAGTGGCGCTGGTCATGGCCGGCGACCCAGACATCCTGACGGACTACGTCATCCCGGCCGGCAGCAACGCCGAGAACATCACCGGCGACTTCTTCACGTTCACCGGCTTCCGCAACCCGCTGAGCATGAACATGAGCATGCCGATGCCCAACGCCAACTTCACGGTGACCAAGGCCACCATGGCCGAGTTCCCGGCGCTCAACGGCCAGAGCGTCTCCTACGCCGTCCTCATGTATCCCCCGGCCACCCTCAACCCGCCGCACACCCACCCGCGCTCTGCCGAGCTCCTGCTCCTCGTCGACGGCGCGCTCTCCGTCGGCTTCGTCGACACGACCAACAAGCTCTACACCCAGGACCTTGCCGCCGGCGACATGTTCGTCTTCCCCAAGGGGATGGTGCACTTCCAGTTCAACTCCGGGAACCAGCCGGCCATGGCGCTCTCGGCGTTCGGAAGCGCCGCCGCGGGGCTCGTGTCGGTGCCGGTCACCGTGTTCGGCACAAACATCGACGACGCCGTGCTCGCCAAGTCGTTCAAGACCGACGTGCCTACGATCCAGAAGCTCAAGGCAGGCCTAACTCCTCCCAAGAAAGCCTAAGCCCTCCCCGTTGGTGTTAATTATTCTTGTTTTTCATCCTGCTGCTGCTGCTGCTTGAAATAAGAGACCTTCCAGGCTACCAACTACTGAAGAAGGTAAATTATGATTTGTGTGGTGAATAATTCTGAATTGTGGTTGTATTGTCTAGTCTGAAGAGCTTTGAACCATGTATCTATCAGTATTAATTAAGGCGTTGTGGGAATATATATAGACCAGTTCAGTTGTAAGTGTTGAGAGTTTCTCTGCTGTAACGGCTTTCCACAATAATGATACATCTCTTAATACTGTGTGTTTCCACTTAAAAAAAAA] [+] EMBL AK109010 [AGTGCACAACCCAAGCTGCTTATTAGCAAGATCATTTAGCCTCCAAAGCTTAATCAAGATTCAGGCCATCTGACCTGATACAATAATGGCATCCTCCATCTTGCTCCTGGTGGTGCTTGCAGTAGTGTCAGCTCCAGTGGCGCTGGTCATGGCCGGCGACCCAGACATCCTGACGGACTACGTCATCCCGGCCGGCAGCAACGCCGAGAACATCACCGGCGACTTCTTCACGTTCACCGGCTTCCGCAACCCGCTGAGCATGAACATGAGCATGCCGATGCCCAACGCCAACTTCACGGTGACCAAGGCCACCATGGCCGAGTTCCCGGCGCTCAACGGCCAGAGCGTCTCCTACGCCGTCCTCATGTATCCCCCGGCCACCCTCAACCCGCCGCACACCCACCCGCGCTCTGCCGAGCTCCTGCTCCTCGTCGACGGCGCGCTCTCCGTCGGCTTCGTCGACACGACCAACAAGCTCTACACCCAGGACCTTGCCGCCGGCGACATGTTCGTCTTCCCCAAGGGGATGGTGCACTTCCAGTTCAACTCCGGGAACCAGCCGGCCATGGCGCTCTCGGCGTTCGGAAGCGCCGCCGCGGGGCTCGTGTCGGTGCCGGTCACCGTGTTCGGCACAAACATCGACGACGCCGTGCTCGCCAAGTCGTTCAAGACCGACGTGCCTACGATCCAGAAGCTCAAGGCAGGCCTAACTCCTCCCAAGAAAGCCTAAGCCCTCCCCGTTGGTGTTAATTATTCTTGTTTTTCATCCTGCTGCTGCTGCTGCTTGAAATAAGAGACCTTCCAGGCTACCAACTACTGAAGAAGGTAAATTATGATTTGTGTGGTGAATAATTCTGAATTGTGGTTGTATTGTCTTGTCTGAAGAGCTTTGAACCATGTATCTATCAGTATTAATTAAGGCGTTGTGGGAATATATATAGACCAGTTCAGTTGTAAGTGTTGAGAGTTTCTCTGCTGTAACGGCTTTCCACAATAATGATACATCTCTTAATACT ] [+] EMBL CF331197 [AGTGCACAACCCAAGCTGCTTATTAGCAAGATCATTTAGCCTCCAAAGCTTAATCAAGATTCAGGCCATCTGACCTGATACAATAATGGCATCCTCCATCTTGCTCCTGGTGGTGCTTGCAGTAGTGTCAGCTCCAGTGGCGCTGGTCATGGCCGGCGACCCAGACATCCTGACGGACTACGTCATCCCGGCCGGCAGCAACGCCGAGAACATCACCGGCGACTTCTTCACGTTCACCGGCTTCCGCAACCCGCTGAGCATGAACATGAGCATGCCGATGCCCAACGCCAACTTCACGGTGACCAAGGCCACCATGGCCGAGTTCCCGGCGCTCAACGGCCAGAGCGTCTCCTACGCCGTCCTCATGTATCCCCCGGCCACCCTCAACCCGCCGCACACCCACCCGCGCTCTGCCGAGCTCCTGCTCCTCGTCGACGGCGCGCTCTCCGTC ] [-] EMBL CF331198 [ CAAGCTCTACACCCAGGACCTTGCCGCCGGCGACATGTTCGTCTTCCCCAAGGGGATGGTGCACTTCCAGTTCAACTCCGGGAACCAGCCGGCCATGGCGCTCTCGGCGTTCGGAAGCGCCGCCGCGGGGCTCGTGTCGGTGCCGGTCACCGTGTTCGGCACAAACATCGACGACGCCGTGCTCGCCAAGTCGTTCAAGACCGACGTGCCTACGATCCAGAAGCTCAAGGCAGGCCTAACTCCTCCCAAGAAAGCCTAAGCCCTCCCCGTTGGTGTTAATTATTCTTGTTTTTCATCCAGCTGCTGCTGCTGCTTGAAATAAGAGACTTTCCAGGCTACCAACTACTGAAGAAGGTAAATTATGATTTGTGTGGTGAATAATTTTGAATTGTGGTTGTATTGTCTAGTGTGAAGAGCTTTGAACCATGTATCTATCAGTATTAATTAAGGCGTTGTGGCAATATATATAGACCAGTTCAGTTGTAAGTGTTGAGAGTTTCTCTGCTGTAACGGCTTTCCACAATAATGATACATCTCTTAATACTGTGTGTTTCCACTTAAAAAAAAA] [-] EMBL CF331194 [ CCTTGCCGCCGGCGACATGTTCGTCTTCCCCAAGGGGATGGTGCACTTCCAGTTCAACTCCGGGAACCAGCCGGCCATGGCGCTCTCGGCGTTCGGAAGCGCCGCCGCGGGGCTCGTGTCGGTGCCGGTCACCGTGTTCGGCACAAACATCGACGACGCCGTGCTCGCCAAGTCGTTCAAGACCGACGTGCCTACGATCCAGAAGCTCAAGGCAGGCCTAACTCCTCCCAAGAAAGCCTAAGCCCTCCCCGTTGGTGTTAATTATTCTTGTTTTTCATCCTGCTGCTGCTGCTGCTTGAAATAAGAGACCTTCCAGGCTACCAACTACTGAAGAAGGTAAATTATGATTTGTGTGGTGAATAATTCTGAATTGTGGTTGTATTGTCTAGTCTGAAGAGCTTTGAACCATGTATCTATCAGTATTAATTAAGGCGTTGTGGGAATATATATAGACCAGTTCAGTTGTAAGTGTTGAGAGTTTCTCTGCTGTAACGGCTTTCCACAATAATGATACATCTCTTAATACTGTGTGTTTCCACTTAAAAAAAAA] consensusID : consensus_7598#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1007 fasta sequence [CCTCCACCTCGATCGATCCATCGCACACTAACTAACAGAGCTAAGATACGACGATGATGATGAGTAGCCGCAGCAGCGTCAGCCTCGGCGTGCTGCTCCTGCTGGCCGTGATCCTCTCCGCCGGCGCCGCCGACCCGGACATCCTCACCGACTTCGTCGTGCCCAGCGACACCGACCCATCCGGGATCGACGGCGCCTTCTTCACCTACAAGAACCTCGTCACCGGCAACTCCGGCGACCCGGCCAAGCTCACCGTCACCAAGGCCACTCACGCCGAGTTCCCGGCGCTGCTTGGCCAGTCCGTGTCCTACGCCGCCCTCGTCTTCGGCGCCGGCACCGTCAACCCGCCGCACATCCACCCCAGGGCGTCGGAGCTGCTGGTGGTCGTGCAGGGCCCGCTGCTGGTGGGGCTCGTCGACGCCGCCCGCAACGGCACCGTGTACACGCAGACGCTGCAGACCGGCGACATGTTCGTGTTCCCCAAGGGCATGGTGCACTTCCAGTTCAACAATGGCACCGACGTCGTCGCCCGCGCCTTCTCCGCCTTCGGCAGCGCCACCCCCGGCACCATCTCCCTCCCCGCCGCGCTCTTCGGCAGCGGCATCGACGACACCATCCTCGACAAGTCCATGCACACCGACCAGGCCACCGTCGACCAGCTCAAGCAAGACCAGGCGCCGCCTTCGCCGAGGCCCTCGCCGGGGTCCTCCTCCTCCGCCGCCGCGGCTTTGCTGCCGTCGCGCTGGGCCATCACCCTGCTGCTTTGCTTCGCAGCCTCCTACTACTTTTACTTCTAGTGAGTTGTGAGCGAACCTGAACCTGGAGCTCATGGCTGTTGTGTGTTTTCATCAAACCATCGTCACCTTCGATCTGTTGGTTGCAAATAAAATGAAATGAATGTTTAATTTTGGCATGTTTTCTGAAATCCGAATCATGCCTTAATTCCTGCTGTAATGTTTATGCAATATTGTAATGTAAGTGCTCTCCAAAATAAACGATCGAGTACT] [+] EMBL AK108987 [CCTCCACCTCGATCGATCCATCGCACACTAACTAACAGAGCTAAGATACGACGATGATGATGAGTAGCCGCAGCAGCGTCAGCCTCGGCGTGCTGCTCCTGCTGGCCGTGATCCTCTCCGCCGGCGCCGCCGACCCGGACATCCTCACCGACTTCGTCGTGCCCAGCGACACCGACCCATCCGGGATCGACGGCGCCTTCTTCACCTACAAGAACCTCGTCACCGGCAACTCCGGCGACCCGGCCAAGCTCACCGTCACCAAGGCCACTCACGCCGAGTTCCCGGCGCTGCTTGGCCAGTCCGTGTCCTACGCCGCCCTCGTCTTCGGCGCCGGCACCGTCAACCCGCCGCACATCCACCCCAGGGCGTCGGAGCTGCTGGTGGTCGTGCAGGGCCCGCTGCTGGTGGGGCTCGTCGACGCCGCCCGCAACGGCACCGTGTACACGCAGACGCTGCAGACCGGCGACATGTTCGTGTTCCCCAAGGGCATGGTGCACTTCCAGTTCAACAATGGCACCGACGTCGTCGCCCGCGCCTTCTCCGCCTTCGGCAGCGCCACCCCCGGCACCATCTCCCTCCCCGCCGCGCTCTTCGGCAGCGGCATCGACGACACCATCCTCGACAAGTCCATGCACACCGACCAGGCCACCGTCGACCAGCTCAAGCAAGACCAGGCGCCGCCTTCGCCGAGGCCCTCGCCGGGGTCCTCCTCCTCCGCCGCCGCGGCTTTGCTGCCGTCGCGCTGGGCCATCACCCTGCTGCTTTGCTTCGCAGCCTCCTACTACTTTTACTTCTAGTGAGTTGTGAGCGAACCTGAACCTGGAGCTCATGGCTGTTGTGTGTTTTCATCAAACCATCGTCACCTTCGATCTGTTGGTTGCAAATAAAATGAAATGAATGTTTAATTTTGGCATGTTTTCTGAAATCCGAATCATGCCTTAATTCCTGCTGTAATGTTTATGCAATATTGTAATGTAAGTGCTCTCCAAAATAAACGATCGAGTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7598#0 AGTGCACAACCCAAGCTGCTTATTAGCAAGATCATTTAGCCTCCAAAGCTTAATCAAGAT 60 consensus_7598#1 ---CCTCCACCTCGATCGATCCATCGCACACTAACTAA-----CAGAGCTAAGATACGAC 52 * * *** * * * *** * * * * ** **** * * ** consensus_7598#0 TCAGGCCATCTGACCTGATACAATAATGGCATCCTC--CATCTTGCTCCTGGTGGTGCTT 118 consensus_7598#1 GATGATGA--TGAGTAGCCGCAGCAGCGTCAGCCTCGGCGTGCTGCTCCTGCTGG----- 105 * * *** * ** * * ** **** * * ******** *** consensus_7598#0 GCAGTAGTGTCAGCTCCAGTGGCGCTGGTCATGGCCGGCGACCCAGACATCCTGACGGAC 178 consensus_7598#1 -CCGTGATCCT--CTCCGCCGGCGC----------CGCCGACCCGGACATCCTCACCGAC 152 * ** * **** ***** ** ****** ******** ** *** consensus_7598#0 TACGTCATCCCGGCCGGCAGCAACGCCGAGAACATCACCGGCGACTTCTTCACGTTCACC 238 consensus_7598#1 TTCGTCGTGCCCAGCGACACCGACCCATCCGGGATCGACGGCGCCTTCTTCACCTACAAG 212 * **** * ** ** ** * ** * *** ***** ********* * ** consensus_7598#0 GGCTTCCGCAACCCGCTGAGCATGAACATGAGCATGCCGATGCCCAACGCCAACTTCACG 298 consensus_7598#1 AACCTC-GTCACCGGC--------AACTCCGGCGACCCG---------GCCAAGCTCACC 254 * ** * *** ** *** ** *** ***** **** consensus_7598#0 GTGACCAAGGCCACCATGGCCGAGTTCCCGGCGCTCAACGGCCAGAGCGTCTCCTACGCC 358 consensus_7598#1 GTCACCAAGGCCACTCACGCCGAGTTCCCGGCGCTGCTTGGCCAGTCCGTGTCCTACGCC 314 ** *********** ***************** ****** *** ********* consensus_7598#0 GTCCTCATGTATCCCCCGGCCACCCTCAACCCGCCGCACACCCACCCGCGCTCTGCCGAG 418 consensus_7598#1 GCCCTCGTCTTCGGCGCCGGCACCGTCAACCCGCCGCACATCCACCCCAGGGCGTCGGAG 374 * **** * * * * * **** *************** ****** * * * *** consensus_7598#0 CTCCTGCTCCTCGTCGACGGCGCGCTCTCCGTCGGCTTCGTCGACACGACCAACAA--GC 476 consensus_7598#1 CTGCTGGTGGTCGTGCAGGGCCCGCTGCTGGTGGGGCTCGTCGACGCCGCCCGCAACGGC 434 ** *** * **** * *** **** ** ** ******** * ** *** ** consensus_7598#0 TC----TACACCCAGGACCTTGCCGCCGGCGACATGTTCGTCTTCCCCAAGGGGATGGTG 532 consensus_7598#1 ACCGTGTACACGCAGACGCTGCAGACCGGCGACATGTTCGTGTTCCCCAAGGGCATGGTG 494 * ***** *** ** **************** *********** ****** consensus_7598#0 CACTTCCAGTTCAACTCCGGGAACCA-GCCGGCCATGGCGC--TCTCGGCGTTCGGAAGC 589 consensus_7598#1 CACTTCCAGTTCAACAATGGCACCGACGTCGTCGCCCGCGCCTTCTCCGCCTTCGGCAGC 554 *************** ** * * * * ** * **** **** ** ***** *** consensus_7598#0 GCCGCCGCGGGGCTCGTGTCGGTGCCGGTCACCGTGTTCGGCACAAACATCGACGACGCC 649 consensus_7598#1 GCCACCCCCGGCACCATCTCCCTCCCCGCCGCGCTCTTCGGCAGCGGCATCGACGACACC 614 *** ** * ** * * ** * ** * * * * ******* ********** ** consensus_7598#0 GTGCTCGCCAAGTCGTTCAAGACCGACGTGCCTACGATCCAGAAGCTCAAGGCAGGCCTA 709 consensus_7598#1 ATCCTCGACAAGTCCATGCACACCGACCAGGCCACCGTCGACCAGCTCAAGCAAGACCAG 674 * **** ****** * * ****** * * ** ** * ******** ** ** consensus_7598#0 ACTCCTCCCAAGAAAGCCTAAGCCCTCCCCGTTGGTGTTAATTATTCTTGTTTTTCATCC 769 consensus_7598#1 GCGCCGCCT----TCGCCGAGGCCCTCGCCGG-GGTCCTCCTCCTCCGCCGCCGCGGCTT 729 * ** ** *** * ****** *** *** * * * * consensus_7598#0 TGCTGCTGCTGCTGCTTGAAATAAGAGACCTTCCAGGCTAC-CAACTACTGAAGAAGGTA 828 consensus_7598#1 TGCTGCCGTCGCGCTGGGCCATCACCCTGCTGCTTTGCTTCGCAGCCTCCTACTACTTTT 789 ****** * ** * ** * ** * *** * ** * * * * * consensus_7598#0 AATT---ATGATTTGTGTGGTGAA--TAATTCTGAA--TTGTGGTTGTATTGTCTAGTCT 881 consensus_7598#1 ACTTCTAGTGAGTTGTG-AGCGAACCTGAACCTGGAGCTCATGGCTGTTGTGTGTTTTCA 848 * ** *** ***** * *** * * *** * * *** *** *** * ** consensus_7598#0 GAAGAGCTTTGA-ACCATGTATCTATCAGTATTAATTAAGGCGTTGTGGGAATATATATA 940 consensus_7598#1 TCAAACCATCGTCACCTTCGATCTGTTGGTTGCAAATAAAATGAAATGAATGTTTAATTT 908 * * * * * *** * **** * ** ** *** * ** * ** * consensus_7598#0 GACCAGTTCAGTTGTAA---GTGTTGAGAGTT--TCTCTGCTGTAACGGCTTTCCACAAT 995 consensus_7598#1 TGGCATGTTTTCTGAAATCCGAATCATGCCTTAATTCCTGCTGTAATGTTTATGCAATAT 968 ** * ** ** * * * ** * ********* * * * ** ** consensus_7598#0 AATGATACAT---CTCTTAATACTGTGTGTTTCCACTTAAAAAAAAA 1039 consensus_7598#1 TGTAATGTAAGTGCTCTCCAAAATAAACGATCGAGTACT-------- 1007 * ** * **** * * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||