cluster # 7605

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Oryza sativa
cluster # 7605 cluster # 7605 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7605#0 length = 1197 sequences # 3

consensus_7605#1 length = 178 sequences # 1
consensus_7605#2 length = 168 sequences # 1

consensusID : consensus_7605#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1197
fasta sequence

                              [CTAACCTCGCGCGCCACCTCTCCTCTCCTCGTCCTCCGCCTCCGGACGCGCAGTTCACGGGCGCCCTAATGGCGAAAAAGGGCAAGGCGGCGGCGGCGGAGGCCGCGGCGCCCGACGCGGGGGTATCGAGCCCGCAGGGCGGCGGCGGGGAGAAGGAGGGCAGCTTCCTGCTGGGCTCGCCGACCTGGGAGGACGCCGGGGGCGGGCGGTGGCGGTGCAAGGAGACGGGGCACGAGCTGCCGGAGCGGGAGAAGGAGGCGTACGGGCGGTCCCGCGCGTGCAGGCTCGCGCTCATCGACCAAGCCGTCGCGCGCAAGAAGCCGCCGCTCAACGCCTTCAAGCCTCACCCCGAGCACAAGTCGAAGCTTATATGCAATATTACTGGGGACATTATAAACAAGTCGGAGGAACACATCTGGAAGCACATCAATGGGAAGAGGTTCCTCAACAAACTAGAAAAACTAGAAGAAAAGATGGCATCAGGTGAAATGGCCGAAGGTGAAGCTGAACAGTCAAATGAAGGGGAAAATAAAACCAAGTCAAGGAAGAAGAAGGACAAGAAGAAAGCTGCTGTTGTTAACCCTTCTTTGCCACGAGAACCTAAACCAGAGATTGATGATTCAGATAATTCTGATGATCCAGATTTCTGGGTGCCTCCTGTTGGAAGTCGTTGGGATGATGATGATGGAAAAGACCGATGGACCTCCTCTCCAGTGAAGGATAAGGATGATGCAGCAGAGGATGAAGATGGTGATGACGATGGTGATGACATGGCTGACAAGGATGACAAGGAGACAAGAGAAATTGCTTCA---AGGACAAAGCGACTGTCAGTAGAAGCAGTTGGCCCAAGTAGCTTCGCTTCAAGGAAGAAAAAAACCAAAAAGGAGCAGTAAAGGTTGGTCCACAGCTTATCATCGAGTTCAATGAAGAACTTATTTGATCTTTCTGTGTGGACGAACAAAGTCCATCTTTGATTCCTCTTGGCTGGCTAGTCAGGTGCGGGTTTTGTATTAATTGGTTTGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTATTGCATGACAATTCTCTATACTTGCATTAGTTAATTCCTGTGATTTTGATGTGAGAATGAACTGTGCTACTTGTCCTATATTTATTCTTGCTATATAACTTCATATGTTTCTTTTGTA]

[+] EMBL AK068996             [CTAACCTCGCGCGCCACCTCTCCTCTCCTCGTCCTCCGCCTCCGGACGCGCAGTTCACGGGCGCCCTAATGGCGAAAAAGGGCAAGGCGGCGGCGGCGGAGGCCGCGGCGCCCGACGCGGGGGTATCGAGCCCGCAGGGCGGCGGCGGGGAGAAGGAGGGCAGCTTCCTGCTGGGCTCGCCGACCTGGGAGGACGCCGGGGGCGGGCGGTGGCGGTGCAAGGAGACGGGGCACGAGCTGCCGGAGCGGGAGAAGGAGGCGTACGGGCGGTCCCGCGCGTGCAGGCTCGCGCTCATCGACCAAGCCGTCGCGCGCAAGAAGCCGCCGCTCAACGCCTTCAAGCCTCACCCCGAGCACAAGTCGAAGCTTATATGCAATATTACTGGGGACATTATAAACAAGTCGGAGGAACACATCTGGAAGCACATCAATGGGAAGAGGTTCCTCAACAAACTAGAAAAACTAGAAGAAAAGATGGCATCAGGTGAAATGGCCGAAGGTGAAGCTGAACAGTCAAATGAAGGGGAAAATAAAACCAAGTCAAGGAAGAAGAAGGACAAGAAGAAAGCTGCTGTTGTTAACCCTTCTTTGCCACGAGAACCTAAACCAGAGATTGATGATTCAGATAATTCTGATGATCCAGATTTCTGGGTGCCTCCTGTTGGAAGTCGTTGGGATGATGATGATGGAAAAGACCGATGGACCTCCTCTCCAGTGAAGGATAAGGATGATGCAGCAGAGGATGAAGATGGTGATGACGATGGTGATGACATGGCTGACAAGGATGACAAGGAGACAAGAGAAATTGCTTCAAGCAGGACAAAGCGACTGTCAGTAGAAGCAGTTGGCCCAAGTAGCTTCGCTTCAAGGAAGAAAAAAACCAAAAAGGAGCAGTAAAGGTTGGTCCACAGCTTATCATCGAGTTCAATGAAGAACTTATTTGATCTTTCTGTGTGGACGAACAAAGTCCATCTTTGATTCCTCTTGGCTGGCTAGTCAGGTGCGGGTTTTGTATTAATTGGTTTGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTATTGCATGACAATTCTCTATACTTGCATTAGTTAATTCCTGTGATTTTGATGTGAGAATGAACTGTGCTACTTGTCCTATATTTATTCTTGCTATATAACTTCATATG           ]
[+] EMBL CA764179             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ggggGATTCAGATAATTCTGATGATCCAGATTTCTGGGTGCCTCCTGTTGGAAGTCGTTGGGATGATGATGATGGAAAAGACCGATGGACCTCCTCTCCAGTGAAGGATAAGGATGATGCAGCAGAGGATGAAGATGGTGATGACGATGGTGATGACATGGCTGACAAGGATGACGAGGAGACAAGAGAAATTGCTTCA   AGGACAAAGCGACTGTCAGTAGAAGCAGTTGGCCCAAGTAGCTTCGCTTCAAGGAAGAAAAAAACCAAAAAGGAGCAGTAAAGGTTGGTCCACAGCTTATCATCGAGTTCAATGAAGAACTTATTTGATCTTTCTGTGTGGACGAACAAAGTCCATCTTTGATTCCTCTTGGCTGGCTAGTCAGGTGCGGGTTTTGTATTAATTGGTTTGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTATTGCATGACAATTCTCTATATTTGCATTAGTTAATTCCTGTGATTTTGATGTGAGAATGAACTGTGCTACTTGTCCTATATTTATTCTTGCTATATAACTTCATATGTTTCTTTTGTA]
[+] EMBL C97811               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GACATGGCTGACAAGGATGACAAGGAGACAAGAGAAATTNCTTCA   AGGACAAAGCGACTGTCAGTAGAAGCAGTTGGCCCAAGTAGCTTCGCTTCAAGGAAGAAAAAAACCAAAAAGGAGCAGTAAAGGTTGGTCCACAGCTTATCATCGAGTTCAATGAAGAACTTATTTNATCTTTCTGTGTGGACGAACAAAGTCCATCTTTGATTCCTCTTGGCTGGCTAGTCAGGTGCGGGTTTTGTATTAATTGGTTTGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTNAGTGGTATACTATTGCATGACAATTCTCTATACTTGCATTAGTTAATTCCTGTGnaa                                                                         ]




>consensus_7605#0
CTAACCTCGCGCGCCACCTCTCCTCTCCTCGTCCTCCGCCTCCGGACGCGCAGTTCACGG
GCGCCCTAATGGCGAAAAAGGGCAAGGCGGCGGCGGCGGAGGCCGCGGCGCCCGACGCGG
GGGTATCGAGCCCGCAGGGCGGCGGCGGGGAGAAGGAGGGCAGCTTCCTGCTGGGCTCGC
CGACCTGGGAGGACGCCGGGGGCGGGCGGTGGCGGTGCAAGGAGACGGGGCACGAGCTGC
CGGAGCGGGAGAAGGAGGCGTACGGGCGGTCCCGCGCGTGCAGGCTCGCGCTCATCGACC
AAGCCGTCGCGCGCAAGAAGCCGCCGCTCAACGCCTTCAAGCCTCACCCCGAGCACAAGT
CGAAGCTTATATGCAATATTACTGGGGACATTATAAACAAGTCGGAGGAACACATCTGGA
AGCACATCAATGGGAAGAGGTTCCTCAACAAACTAGAAAAACTAGAAGAAAAGATGGCAT
CAGGTGAAATGGCCGAAGGTGAAGCTGAACAGTCAAATGAAGGGGAAAATAAAACCAAGT
CAAGGAAGAAGAAGGACAAGAAGAAAGCTGCTGTTGTTAACCCTTCTTTGCCACGAGAAC
CTAAACCAGAGATTGATGATTCAGATAATTCTGATGATCCAGATTTCTGGGTGCCTCCTG
TTGGAAGTCGTTGGGATGATGATGATGGAAAAGACCGATGGACCTCCTCTCCAGTGAAGG
ATAAGGATGATGCAGCAGAGGATGAAGATGGTGATGACGATGGTGATGACATGGCTGACA
AGGATGACAAGGAGACAAGAGAAATTGCTTCAAGGACAAAGCGACTGTCAGTAGAAGCAG
TTGGCCCAAGTAGCTTCGCTTCAAGGAAGAAAAAAACCAAAAAGGAGCAGTAAAGGTTGG
TCCACAGCTTATCATCGAGTTCAATGAAGAACTTATTTGATCTTTCTGTGTGGACGAACA
AAGTCCATCTTTGATTCCTCTTGGCTGGCTAGTCAGGTGCGGGTTTTGTATTAATTGGTT
TGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTAT
TGCATGACAATTCTCTATACTTGCATTAGTTAATTCCTGTGATTTTGATGTGAGAATGAA
CTGTGCTACTTGTCCTATATTTATTCTTGCTATATAACTTCATATGTTTCTTTTGTA

consensusID : consensus_7605#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 178
fasta sequence

                              [TAATTGGTTTGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTATTGCATGACAATTCTCTATACTTGCATTAGTTAATTCCTGTGATTTTGATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAATATCACTGTCATGCCGTTACGAACCGTAT]

[+] EMBL CF330898             [TAATTGGTTTGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTATTGCATGACAATTCTCTATACTTGCATTAGTTAATTCCTGTGATTTTGATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAATATCACTGTCATGCCGTTACGAACCGTAT]




>consensus_7605#1
TAATTGGTTTGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTCAGTG
GTATACTATTGCATGACAATTCTCTATACTTGCATTAGTTAATTCCTGTGATTTTGATGT
GAAAAAAAAAAAAAAAAAAAAAAAAAAAATATCACTGTCATGCCGTTACGAACCGTAT

consensusID : consensus_7605#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 168
fasta sequence

                              [ATGGAGTTAAGGAGTAGAAATTTTGTATTAATTGGTTTGCTTTTAGTTAGGGGTTCTTTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTATTGCAAGGCAATTTTCTAAAATTGCATTAGTTAATTCCTGTGATTTTGATGGTAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF330897             [ATGGAGTTAAGGAGTAGAAATTTTGTATTAATTGGTTTGCTTTTAGTTAGGGGTTCTTTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTATTGCAAGGCAATTTTCTAAAATTGCATTAGTTAATTCCTGTGATTTTGATGGTAAAAAAAAAAAAAAAAAAA]




>consensus_7605#2
ATGGAGTTAAGGAGTAGAAATTTTGTATTAATTGGTTTGCTTTTAGTTAGGGGTTCTTTG
TGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTATTGCAAGGCAATTTTCTAAAATTG
CATTAGTTAATTCCTGTGATTTTGATGGTAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7605#1      ------------------------------------------------------------
consensus_7605#2      ------------------------------------------------------------
consensus_7605#0      CTAACCTCGCGCGCCACCTCTCCTCTCCTCGTCCTCCGCCTCCGGACGCGCAGTTCACGG 60
                                                                                  

consensus_7605#1      ------------------------------------------------------------
consensus_7605#2      ------------------------------------------------------------
consensus_7605#0      GCGCCCTAATGGCGAAAAAGGGCAAGGCGGCGGCGGCGGAGGCCGCGGCGCCCGACGCGG 120
                                                                                  

consensus_7605#1      ------------------------------------------------------------
consensus_7605#2      ------------------------------------------------------------
consensus_7605#0      GGGTATCGAGCCCGCAGGGCGGCGGCGGGGAGAAGGAGGGCAGCTTCCTGCTGGGCTCGC 180
                                                                                  

consensus_7605#1      ------------------------------------------------------------
consensus_7605#2      ------------------------------------------------------------
consensus_7605#0      CGACCTGGGAGGACGCCGGGGGCGGGCGGTGGCGGTGCAAGGAGACGGGGCACGAGCTGC 240
                                                                                  

consensus_7605#1      ------------------------------------------------------------
consensus_7605#2      ------------------------------------------------------------
consensus_7605#0      CGGAGCGGGAGAAGGAGGCGTACGGGCGGTCCCGCGCGTGCAGGCTCGCGCTCATCGACC 300
                                                                                  

consensus_7605#1      ------------------------------------------------------------
consensus_7605#2      ------------------------------------------------------------
consensus_7605#0      AAGCCGTCGCGCGCAAGAAGCCGCCGCTCAACGCCTTCAAGCCTCACCCCGAGCACAAGT 360
                                                                                  

consensus_7605#1      ------------------------------------------------------------
consensus_7605#2      ------------------------------------------------------------
consensus_7605#0      CGAAGCTTATATGCAATATTACTGGGGACATTATAAACAAGTCGGAGGAACACATCTGGA 420
                                                                                  

consensus_7605#1      ------------------------------------------------------------
consensus_7605#2      ------------------------------------------------------------
consensus_7605#0      AGCACATCAATGGGAAGAGGTTCCTCAACAAACTAGAAAAACTAGAAGAAAAGATGGCAT 480
                                                                                  

consensus_7605#1      ------------------------------------------------------------
consensus_7605#2      ------------------------------------------------------------
consensus_7605#0      CAGGTGAAATGGCCGAAGGTGAAGCTGAACAGTCAAATGAAGGGGAAAATAAAACCAAGT 540
                                                                                  

consensus_7605#1      ------------------------------------------------------------
consensus_7605#2      ------------------------------------------------------------
consensus_7605#0      CAAGGAAGAAGAAGGACAAGAAGAAAGCTGCTGTTGTTAACCCTTCTTTGCCACGAGAAC 600
                                                                                  

consensus_7605#1      ------------------------------------------------------------
consensus_7605#2      ------------------------------------------------------------
consensus_7605#0      CTAAACCAGAGATTGATGATTCAGATAATTCTGATGATCCAGATTTCTGGGTGCCTCCTG 660
                                                                                  

consensus_7605#1      ------------------------------------------------------------
consensus_7605#2      ------------------------------------------------------------
consensus_7605#0      TTGGAAGTCGTTGGGATGATGATGATGGAAAAGACCGATGGACCTCCTCTCCAGTGAAGG 720
                                                                                  

consensus_7605#1      ------------------------------------------------------------
consensus_7605#2      ------------------------------------------------------------
consensus_7605#0      ATAAGGATGATGCAGCAGAGGATGAAGATGGTGATGACGATGGTGATGACATGGCTGACA 780
                                                                                  

consensus_7605#1      ------------------------------------------------------------
consensus_7605#2      ------------------------------------------------------------
consensus_7605#0      AGGATGACAAGGAGACAAGAGAAATTGCTTCAAGGACAAAGCGACTGTCAGTAGAAGCAG 840
                                                                                  

consensus_7605#1      ------------------------------------------------------------
consensus_7605#2      ------------------------------------------------------------
consensus_7605#0      TTGGCCCAAGTAGCTTCGCTTCAAGGAAGAAAAAAACCAAAAAGGAGCAGTAAAGGTTGG 900
                                                                                  

consensus_7605#1      ------------------------------------------------------------
consensus_7605#2      ------------------------------------------------------------
consensus_7605#0      TCCACAGCTTATCATCGAGTTCAATGAAGAACTTATTTGATCTTTCTGTGTGGACGAACA 960
                                                                                  

consensus_7605#1      ---------------------------------------------------TAATTGGTT 9
consensus_7605#2      -----------------------ATGGAGTTAAGGAGTAGAAATTTTGTATTAATTGGTT 37
consensus_7605#0      AAGTCCATCTTTGATTCCTCTTGGCTGGCTAGTCAGGTGCGGGTTTTGTATTAATTGGTT 1020
                                                                         *********

consensus_7605#1      TGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTAT 69
consensus_7605#2      TGCTTTTAGTTAGGGGTTCTTTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTAT 97
consensus_7605#0      TGCTTTTAGTTAGTGCTTCTCTGTGTAGCCCTATCGCTGCACCTTTCAGTGGTATACTAT 1080
                      ************* * **** ***************************************

consensus_7605#1      TGCATGACAATTCTCTATACTTGCATTAGTTAATTCCTGTGATTTTGATGTGAAAAAAAA 129
consensus_7605#2      TGCAAGGCAATTTTCTAAAATTGCATTAGTTAATTCCTGTGATTTTGATGGTAAAAAAAA 157
consensus_7605#0      TGCATGACAATTCTCTATACTTGCATTAGTTAATTCCTGTGATTTTGATGTGAGAATGAA 1140
                      **** * ***** **** * ******************************  * **  **

consensus_7605#1      AAAAAAAAAA-AAAAAAAAAATATCACTGTCATGCCGTTACGAACCGTAT------- 178
consensus_7605#2      AAAAAAAAAA-A--------------------------------------------- 168
consensus_7605#0      CTGTGCTACTTGTCCTATATTTATTCTTGCTATATAACTTCATATGTTTCTTTTGTA 1197
                             *