These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7610#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 775 fasta sequence [ACCAAGTCCGCGTCTCCGAGATCGTCGAGCCGAGCACACAAGGCGGCGGCGGCGGCGGCCGGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGAGGGCGAGAGGGTTTTCGGAGCGGGAGGGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGCCATGGCGGAGCTCGTGGGGCGGGTGGCGCGGCGGGCGTACCAGCGGAACGGCGTCGTCACCGACGTCAAGTCCTTCGGCA-CCATCTGCCTCGGCTACGGCATCAAGAAGCTCGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACAGGCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGACGCGGTGTATGGTGTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGACGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGGCA-GGCAGATATTGTTGTCCACCAAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAG-CAAGTAGTAGCTTGTTTGTTTATCTGACGTTTGTGATGCGAATAAGCACCAAAATG-AATCATATATAAT-TTCAAAGCTGTCAAAAATTTTG] [+] EMBL AK105167 [ACCAAGTCCGCGTCTCCGAGATCGTCGAGCCGAGCACACAAGGCGGCGGCGGCGGCGGCCGGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGAGGGCGAGAGGGTTTTCGGAGCGGGAGGGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGCCATGGCGGAGCTCGTGGGGCGGGTGGCGCGGCGGGCGTACCAGCGGAACGGCGTCGTCACCGACGTCAAGTCCTTCGGCA CCATCTGCCTCGGCTACGGCATCAAGAAGCTCGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACAGGCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGACGCGGTGTATGGTGTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGATGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGGCA GGCAGATATTGTTGTCCACCAAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAG CAAGTAGTAGCCTGTTTGTTTGTCTGACGTTTGTGATGCGAATAAGCACCAAAATG AATCATATATAAT TTCAAAGCTGTCACTGCTTTTG] [+] EMBL BI798144 [ gcGGCCTACCA CCGAACGGCGTCGTCACCGACGTCAAGTCCTTC GCACCCATCTGCCTCGGCTACGGCATCAAGAAGCTCGACGGCCGCCACTTCAA GGCCAACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACAGGCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGACGCGGTGTATGGTGTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGACGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGGCACGGCAGATATTGTTGTCCACCAAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAGCCAAGTAGTAGCTTGTTTGTTTATCTGACGTTTGTGATGCGAATAAGCACC AAATGCCATCATATATAATCTTCAAAGCTGTCAAAAAa ] [+] EMBL BI798966 [ GGCCCAACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACA GCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGAC CGGTGTATGGTGTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGACGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGGCA GGCAGATATTGTTGTCCACCAAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAG CAAGTAGTAGCTTGTTTGTTTATCTGACGTTTGTGATGCGAATAAGCACCAAACTG AATCATATATAAT TTCAAAGCTGTCAAAAA ] consensusID : consensus_7610#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [ATTCTTGTCTGGGTGTCCCGCTGTGTTCTCTGTGAGGCCCTTTGCGGGATGCTTCTGTGGTCGGTTGTCGCGTCGGGCGTACCCAGCGGAACGGTCGTCGTCACCTGACTTCTAGTCCTTCTGGCACCATCGTGCCTCGGCTACGGCATCATAGAAGCTCGACGGCCGCCACTTCATAGGGCCACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACAAGTGCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGACGCGGTGTATGGTTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGACGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGCCCAGGCAGATATTGTTGTCCACCAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAGCAAGTAGTAGCTTGTTTGTTTATCTGACGTTTGTGATGCGAATAAGCACCAAATGCATCATATATAATTTCAAAGCTGTCAAAAAA] [+] EMBL BI798486 [ATTCTTGTCTGGGTGTCCCGCTGTGTTCTCTGTGAGGCCCTTTGCGGGATGCTTCTGTGGTCGGTTGTCGCGTCGGGCGTACCCAGCGGAACGGTCGTCGTCACCTGACTTCTAGTCCTTCTGGCACCATCGTGCCTCGGCTACGGCATCATAGAAGCTCGACGGCCGCCACTTCATAGGGCCACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACAAGTGCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGACGCGGTGTATGGTTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGACGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGCCCAGGCAGATATTGTTGTCCACCAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAGCAAGTAGTAGCTTGTTTGTTTATCTGACGTTTGTGATGCGAATAAGCACCAAATGCATCATATATAATTTCAAAGCTGTCAAAAAA] consensusID : consensus_7610#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [NNCNGNGNACGCGTGGGCAAGGCGGCGGCGGCGGCGGCCGGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGANNGCGAGAGGGTTTTCGGAGCGGGAGGGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGCCATGGCGGACTCGTGGGGCGGGTGGCGCGGCGGGCGTACCAGCGGAACGGCGTCGTCACCGACGTCAAGTCCTTCGGCACCATCTGCCTCGGCTACGGCATCAAGAAGCTCGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCANCCTCCTTCANCCAAGAACTCCACTACCTGAACAAGGAGGACAGGCTGCTTCCGCTTGGCTTGGTGGTGAAGCACAGAGACGCNGTGTATTGTGTTGAGTTCATCAACGAGGACGACNGG] [+] EMBL AU069138 [NNCNGNGNACGCGTGGGCAAGGCGGCGGCGGCGGCGGCCGGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGANNGCGAGAGGGTTTTCGGAGCGGGAGGGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGCCATGGCGGACTCGTGGGGCGGGTGGCGCGGCGGGCGTACCAGCGGAACGGCGTCGTCACCGACGTCAAGTCCTTCGGCACCATCTGCCTCGGCTACGGCATCAAGAAGCTCGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCANCCTCCTTCANCCAAGAACTCCACTACCTGAACAAGGAGGACAGGCTGCTTCCGCTTGGCTTGGTGGTGAAGCACAGAGACGCNGTGTATTGTGTTGAGTTCATCAACGAGGACGACNGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7610#0 ACCAAGTCCGCGTCTCCGAGATCGTCGAGC-CGAGCACACAAGGCGGCGGCGGCGGCGGC 59 consensus_7610#2 ----------------------NNCNGNGNACGCGTGGGCAAGGCGGCGGCGGCGGCGGC 38 consensus_7610#1 ------------------------------------------------------------ consensus_7610#0 CGGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGAGGGCGAGAGGGTTTTCGGAGCGGGA 119 consensus_7610#2 CGGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGANNGCGAGAGGGTTTTCGGAGCGGGA 98 consensus_7610#1 ------------------------------------------------------------ consensus_7610#0 GGGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGC 179 consensus_7610#2 GGGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGC 158 consensus_7610#1 --------------------ATTCTTGTCTGGGTGTCCCGCTG-TGTTCTCTGTGAGGCC 39 * * *** ** ** * ** * * * * * consensus_7610#0 CATGGCGGAG--CTCGTGGGG-CGGGTGGCGCGGCGGGCGTACC-AGCGGAACGG-CGTC 234 consensus_7610#2 CATGGCGGA---CTCGTGGGG-CGGGTGGCGCGGCGGGCGTACC-AGCGGAACGG-CGTC 212 consensus_7610#1 CTTTGCGGGATGCTTCTGTGGTCGGTTGTCGCGTCGGGCGTACCCAGCGGAACGGTCGTC 99 * * **** ** ** ** *** ** **** ********** ********** **** consensus_7610#0 GTCACC-GACGTCAAGTCCTTC-GGCACCATC-TGCCTCGGCTACGGCATCA-AGAAGCT 290 consensus_7610#2 GTCACC-GACGTCAAGTCCTTC-GGCACCATC-TGCCTCGGCTACGGCATCA-AGAAGCT 268 consensus_7610#1 GTCACCTGACTTCTAGTCCTTCTGGCACCATCGTGCCTCGGCTACGGCATCATAGAAGCT 159 ****** *** ** ******** ********* ******************* ******* consensus_7610#0 CGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCACCCTCCTT 350 consensus_7610#2 CGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCANCCTCCTT 328 consensus_7610#1 CGACGGCCGCCACTTCATAGGGCCACTTATGCAAATGACCATGATGGTTCCACCCTCCTT 219 ***************** ** * **************************** ******* consensus_7610#0 CACCCAAGAACTCCACTACCTGAACAAGGAGGACAGG--CTGCT-CCGCTGG--CTGGTG 405 consensus_7610#2 CANCCAAGAACTCCACTACCTGAACAAGGAGGACAGG--CTGCTTCCGCTTGGCTTGGTG 386 consensus_7610#1 CACCCAAGAACTCCACTACCTGAACAAGGAGGACAAGTGCTGCT-CCGCTGG--CTGGTG 276 ** ******************************** * ***** ***** * ***** consensus_7610#0 GTGAAGCACAGAGACGCGGTGTATGGTGTGGAGTTCATCAACGAGGACGACGGGAGGAGG 465 consensus_7610#2 GTGAAGCACAGAGACGCNGTGTATTGTGTTGAGTTCATCAACGAGGACGACNGG------ 440 consensus_7610#1 GTGAAGCACAGAGACGCGGTGTATGGT-TGGAGTTCATCAACGAGGACGACGGGAGGAGG 335 ***************** ****** ** * ********************* ** consensus_7610#0 GAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGAC 525 consensus_7610#2 ------------------------------------------------------------ consensus_7610#1 GAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGAC 395 consensus_7610#0 GACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTG 585 consensus_7610#2 ------------------------------------------------------------ consensus_7610#1 GACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTG 455 consensus_7610#0 CTCCCATACCGGCAGGCAGATATTGTTGTCCACCAAATAGGGAATATCTTGAAATGTGAT 645 consensus_7610#2 ------------------------------------------------------------ consensus_7610#1 CTCCCATACCGCCCAGGCAGATATTGTTGTCCACCAATAGGGAATATCTTGAAATGTGAT 515 consensus_7610#0 TTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAGCAAGTAGTAGCTTGTTTGTTT 705 consensus_7610#2 ------------------------------------------------------------ consensus_7610#1 TTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAGCAAGTAGTAGCTTGTTTGTTT 575 consensus_7610#0 ATCTGACGTTTGTGATGCGAATAAGCACCAAAATGAATCATATATAATTTCAAAGCTGTC 765 consensus_7610#2 ------------------------------------------------------------ consensus_7610#1 ATCTGACGTTTGTGATGCGAATAAGCACCAAATGCATCATATATAATTTCAAAGCTGTCA 635 consensus_7610#0 AAAAATTTTG 775 consensus_7610#2 ---------- consensus_7610#1 AAAAA----- 640 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||