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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7610#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 775 fasta sequence
[ACCAAGTCCGCGTCTCCGAGATCGTCGAGCCGAGCACACAAGGCGGCGGCGGCGGCGGCCGGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGAGGGCGAGAGGGTTTTCGGAGCGGGAGGGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGCCATGGCGGAGCTCGTGGGGCGGGTGGCGCGGCGGGCGTACCAGCGGAACGGCGTCGTCACCGACGTCAAGTCCTTCGGCA-CCATCTGCCTCGGCTACGGCATCAAGAAGCTCGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACAGGCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGACGCGGTGTATGGTGTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGACGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGGCA-GGCAGATATTGTTGTCCACCAAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAG-CAAGTAGTAGCTTGTTTGTTTATCTGACGTTTGTGATGCGAATAAGCACCAAAATG-AATCATATATAAT-TTCAAAGCTGTCAAAAATTTTG]
[+] EMBL AK105167 [ACCAAGTCCGCGTCTCCGAGATCGTCGAGCCGAGCACACAAGGCGGCGGCGGCGGCGGCCGGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGAGGGCGAGAGGGTTTTCGGAGCGGGAGGGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGCCATGGCGGAGCTCGTGGGGCGGGTGGCGCGGCGGGCGTACCAGCGGAACGGCGTCGTCACCGACGTCAAGTCCTTCGGCA CCATCTGCCTCGGCTACGGCATCAAGAAGCTCGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACAGGCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGACGCGGTGTATGGTGTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGATGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGGCA GGCAGATATTGTTGTCCACCAAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAG CAAGTAGTAGCCTGTTTGTTTGTCTGACGTTTGTGATGCGAATAAGCACCAAAATG AATCATATATAAT TTCAAAGCTGTCACTGCTTTTG]
[+] EMBL BI798144 [ gcGGCCTACCA CCGAACGGCGTCGTCACCGACGTCAAGTCCTTC GCACCCATCTGCCTCGGCTACGGCATCAAGAAGCTCGACGGCCGCCACTTCAA GGCCAACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACAGGCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGACGCGGTGTATGGTGTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGACGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGGCACGGCAGATATTGTTGTCCACCAAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAGCCAAGTAGTAGCTTGTTTGTTTATCTGACGTTTGTGATGCGAATAAGCACC AAATGCCATCATATATAATCTTCAAAGCTGTCAAAAAa ]
[+] EMBL BI798966 [ GGCCCAACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACA GCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGAC CGGTGTATGGTGTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGACGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGGCA GGCAGATATTGTTGTCCACCAAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAG CAAGTAGTAGCTTGTTTGTTTATCTGACGTTTGTGATGCGAATAAGCACCAAACTG AATCATATATAAT TTCAAAGCTGTCAAAAA ]
consensusID : consensus_7610#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence
[ATTCTTGTCTGGGTGTCCCGCTGTGTTCTCTGTGAGGCCCTTTGCGGGATGCTTCTGTGGTCGGTTGTCGCGTCGGGCGTACCCAGCGGAACGGTCGTCGTCACCTGACTTCTAGTCCTTCTGGCACCATCGTGCCTCGGCTACGGCATCATAGAAGCTCGACGGCCGCCACTTCATAGGGCCACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACAAGTGCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGACGCGGTGTATGGTTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGACGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGCCCAGGCAGATATTGTTGTCCACCAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAGCAAGTAGTAGCTTGTTTGTTTATCTGACGTTTGTGATGCGAATAAGCACCAAATGCATCATATATAATTTCAAAGCTGTCAAAAAA]
[+] EMBL BI798486 [ATTCTTGTCTGGGTGTCCCGCTGTGTTCTCTGTGAGGCCCTTTGCGGGATGCTTCTGTGGTCGGTTGTCGCGTCGGGCGTACCCAGCGGAACGGTCGTCGTCACCTGACTTCTAGTCCTTCTGGCACCATCGTGCCTCGGCTACGGCATCATAGAAGCTCGACGGCCGCCACTTCATAGGGCCACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACAAGTGCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGACGCGGTGTATGGTTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGACGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGCCCAGGCAGATATTGTTGTCCACCAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAGCAAGTAGTAGCTTGTTTGTTTATCTGACGTTTGTGATGCGAATAAGCACCAAATGCATCATATATAATTTCAAAGCTGTCAAAAAA]
consensusID : consensus_7610#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence
[NNCNGNGNACGCGTGGGCAAGGCGGCGGCGGCGGCGGCCGGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGANNGCGAGAGGGTTTTCGGAGCGGGAGGGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGCCATGGCGGACTCGTGGGGCGGGTGGCGCGGCGGGCGTACCAGCGGAACGGCGTCGTCACCGACGTCAAGTCCTTCGGCACCATCTGCCTCGGCTACGGCATCAAGAAGCTCGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCANCCTCCTTCANCCAAGAACTCCACTACCTGAACAAGGAGGACAGGCTGCTTCCGCTTGGCTTGGTGGTGAAGCACAGAGACGCNGTGTATTGTGTTGAGTTCATCAACGAGGACGACNGG]
[+] EMBL AU069138 [NNCNGNGNACGCGTGGGCAAGGCGGCGGCGGCGGCGGCCGGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGANNGCGAGAGGGTTTTCGGAGCGGGAGGGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGCCATGGCGGACTCGTGGGGCGGGTGGCGCGGCGGGCGTACCAGCGGAACGGCGTCGTCACCGACGTCAAGTCCTTCGGCACCATCTGCCTCGGCTACGGCATCAAGAAGCTCGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCANCCTCCTTCANCCAAGAACTCCACTACCTGAACAAGGAGGACAGGCTGCTTCCGCTTGGCTTGGTGGTGAAGCACAGAGACGCNGTGTATTGTGTTGAGTTCATCAACGAGGACGACNGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7610#0 ACCAAGTCCGCGTCTCCGAGATCGTCGAGC-CGAGCACACAAGGCGGCGGCGGCGGCGGC 59
consensus_7610#2 ----------------------NNCNGNGNACGCGTGGGCAAGGCGGCGGCGGCGGCGGC 38
consensus_7610#1 ------------------------------------------------------------
consensus_7610#0 CGGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGAGGGCGAGAGGGTTTTCGGAGCGGGA 119
consensus_7610#2 CGGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGANNGCGAGAGGGTTTTCGGAGCGGGA 98
consensus_7610#1 ------------------------------------------------------------
consensus_7610#0 GGGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGC 179
consensus_7610#2 GGGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGC 158
consensus_7610#1 --------------------ATTCTTGTCTGGGTGTCCCGCTG-TGTTCTCTGTGAGGCC 39
* * *** ** ** * ** * * * * *
consensus_7610#0 CATGGCGGAG--CTCGTGGGG-CGGGTGGCGCGGCGGGCGTACC-AGCGGAACGG-CGTC 234
consensus_7610#2 CATGGCGGA---CTCGTGGGG-CGGGTGGCGCGGCGGGCGTACC-AGCGGAACGG-CGTC 212
consensus_7610#1 CTTTGCGGGATGCTTCTGTGGTCGGTTGTCGCGTCGGGCGTACCCAGCGGAACGGTCGTC 99
* * **** ** ** ** *** ** **** ********** ********** ****
consensus_7610#0 GTCACC-GACGTCAAGTCCTTC-GGCACCATC-TGCCTCGGCTACGGCATCA-AGAAGCT 290
consensus_7610#2 GTCACC-GACGTCAAGTCCTTC-GGCACCATC-TGCCTCGGCTACGGCATCA-AGAAGCT 268
consensus_7610#1 GTCACCTGACTTCTAGTCCTTCTGGCACCATCGTGCCTCGGCTACGGCATCATAGAAGCT 159
****** *** ** ******** ********* ******************* *******
consensus_7610#0 CGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCACCCTCCTT 350
consensus_7610#2 CGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCANCCTCCTT 328
consensus_7610#1 CGACGGCCGCCACTTCATAGGGCCACTTATGCAAATGACCATGATGGTTCCACCCTCCTT 219
***************** ** * **************************** *******
consensus_7610#0 CACCCAAGAACTCCACTACCTGAACAAGGAGGACAGG--CTGCT-CCGCTGG--CTGGTG 405
consensus_7610#2 CANCCAAGAACTCCACTACCTGAACAAGGAGGACAGG--CTGCTTCCGCTTGGCTTGGTG 386
consensus_7610#1 CACCCAAGAACTCCACTACCTGAACAAGGAGGACAAGTGCTGCT-CCGCTGG--CTGGTG 276
** ******************************** * ***** ***** * *****
consensus_7610#0 GTGAAGCACAGAGACGCGGTGTATGGTGTGGAGTTCATCAACGAGGACGACGGGAGGAGG 465
consensus_7610#2 GTGAAGCACAGAGACGCNGTGTATTGTGTTGAGTTCATCAACGAGGACGACNGG------ 440
consensus_7610#1 GTGAAGCACAGAGACGCGGTGTATGGT-TGGAGTTCATCAACGAGGACGACGGGAGGAGG 335
***************** ****** ** * ********************* **
consensus_7610#0 GAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGAC 525
consensus_7610#2 ------------------------------------------------------------
consensus_7610#1 GAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGAC 395
consensus_7610#0 GACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTG 585
consensus_7610#2 ------------------------------------------------------------
consensus_7610#1 GACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTG 455
consensus_7610#0 CTCCCATACCGGCAGGCAGATATTGTTGTCCACCAAATAGGGAATATCTTGAAATGTGAT 645
consensus_7610#2 ------------------------------------------------------------
consensus_7610#1 CTCCCATACCGCCCAGGCAGATATTGTTGTCCACCAATAGGGAATATCTTGAAATGTGAT 515
consensus_7610#0 TTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAGCAAGTAGTAGCTTGTTTGTTT 705
consensus_7610#2 ------------------------------------------------------------
consensus_7610#1 TTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAGCAAGTAGTAGCTTGTTTGTTT 575
consensus_7610#0 ATCTGACGTTTGTGATGCGAATAAGCACCAAAATGAATCATATATAATTTCAAAGCTGTC 765
consensus_7610#2 ------------------------------------------------------------
consensus_7610#1 ATCTGACGTTTGTGATGCGAATAAGCACCAAATGCATCATATATAATTTCAAAGCTGTCA 635
consensus_7610#0 AAAAATTTTG 775
consensus_7610#2 ----------
consensus_7610#1 AAAAA----- 640
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||