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Oryza sativa
cluster # 7610 cluster # 7610       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7610#0 length = 775 sequences # 3  
consensus_7610#1 length = 640 sequences # 1  
consensus_7610#2 length = 440 sequences # 1  

consensusID : consensus_7610#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 775
fasta sequence
                              [ACCAAGTCCGCGTCTCCGAGATCGTCGAGCCGAGCACACAAGGCGGCGGCGGCGGCGGCCGGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGAGGGCGAGAGGGTTTTCGGAGCGGGAGGGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGCCATGGCGGAGCTCGTGGGGCGGGTGGCGCGGCGGGCGTACCAGCGGAACGGCGTCGTCACCGACGTCAAGTCCTTCGGCA-CCATCTGCCTCGGCTACGGCATCAAGAAGCTCGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACAGGCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGACGCGGTGTATGGTGTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGACGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGGCA-GGCAGATATTGTTGTCCACCAAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAG-CAAGTAGTAGCTTGTTTGTTTATCTGACGTTTGTGATGCGAATAAGCACCAAAATG-AATCATATATAAT-TTCAAAGCTGTCAAAAATTTTG]

[+] EMBL AK105167             [ACCAAGTCCGCGTCTCCGAGATCGTCGAGCCGAGCACACAAGGCGGCGGCGGCGGCGGCCGGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGAGGGCGAGAGGGTTTTCGGAGCGGGAGGGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGCCATGGCGGAGCTCGTGGGGCGGGTGGCGCGGCGGGCGTACCAGCGGAACGGCGTCGTCACCGACGTCAAGTCCTTCGGCA CCATCTGCCTCGGCTACGGCATCAAGAAGCTCGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACAGGCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGACGCGGTGTATGGTGTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGATGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGGCA GGCAGATATTGTTGTCCACCAAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAG CAAGTAGTAGCCTGTTTGTTTGTCTGACGTTTGTGATGCGAATAAGCACCAAAATG AATCATATATAAT TTCAAAGCTGTCACTGCTTTTG]
[+] EMBL BI798144             [                                                                                                                                                                                                                  gcGGCCTACCA CCGAACGGCGTCGTCACCGACGTCAAGTCCTTC GCACCCATCTGCCTCGGCTACGGCATCAAGAAGCTCGACGGCCGCCACTTCAA GGCCAACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACAGGCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGACGCGGTGTATGGTGTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGACGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGGCACGGCAGATATTGTTGTCCACCAAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAGCCAAGTAGTAGCTTGTTTGTTTATCTGACGTTTGTGATGCGAATAAGCACC AAATGCCATCATATATAATCTTCAAAGCTGTCAAAAAa    ]
[+] EMBL BI798966             [                                                                                                                                                                                                                                                                                                                     GGCCCAACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACA GCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGAC CGGTGTATGGTGTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGACGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGGCA GGCAGATATTGTTGTCCACCAAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAG CAAGTAGTAGCTTGTTTGTTTATCTGACGTTTGTGATGCGAATAAGCACCAAACTG AATCATATATAAT TTCAAAGCTGTCAAAAA     ]


>consensus_7610#0 ACCAAGTCCGCGTCTCCGAGATCGTCGAGCCGAGCACACAAGGCGGCGGCGGCGGCGGCC GGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGAGGGCGAGAGGGTTTTCGGAGCGGGAG GGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGCC ATGGCGGAGCTCGTGGGGCGGGTGGCGCGGCGGGCGTACCAGCGGAACGGCGTCGTCACC GACGTCAAGTCCTTCGGCACCATCTGCCTCGGCTACGGCATCAAGAAGCTCGACGGCCGC CACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAA CTCCACTACCTGAACAAGGAGGACAGGCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGAC GCGGTGTATGGTGTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTC CGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGACGACGACGATGATGAC TATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGGCAG GCAGATATTGTTGTCCACCAAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTC CCAGTTGTTCTAGATCATGGATAGCAAGTAGTAGCTTGTTTGTTTATCTGACGTTTGTGA TGCGAATAAGCACCAAAATGAATCATATATAATTTCAAAGCTGTCAAAAATTTTG



consensusID : consensus_7610#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence
                              [ATTCTTGTCTGGGTGTCCCGCTGTGTTCTCTGTGAGGCCCTTTGCGGGATGCTTCTGTGGTCGGTTGTCGCGTCGGGCGTACCCAGCGGAACGGTCGTCGTCACCTGACTTCTAGTCCTTCTGGCACCATCGTGCCTCGGCTACGGCATCATAGAAGCTCGACGGCCGCCACTTCATAGGGCCACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACAAGTGCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGACGCGGTGTATGGTTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGACGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGCCCAGGCAGATATTGTTGTCCACCAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAGCAAGTAGTAGCTTGTTTGTTTATCTGACGTTTGTGATGCGAATAAGCACCAAATGCATCATATATAATTTCAAAGCTGTCAAAAAA]

[+] EMBL BI798486             [ATTCTTGTCTGGGTGTCCCGCTGTGTTCTCTGTGAGGCCCTTTGCGGGATGCTTCTGTGGTCGGTTGTCGCGTCGGGCGTACCCAGCGGAACGGTCGTCGTCACCTGACTTCTAGTCCTTCTGGCACCATCGTGCCTCGGCTACGGCATCATAGAAGCTCGACGGCCGCCACTTCATAGGGCCACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCTGAACAAGGAGGACAAGTGCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGACGCGGTGTATGGTTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGACGACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGCCCAGGCAGATATTGTTGTCCACCAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAGCAAGTAGTAGCTTGTTTGTTTATCTGACGTTTGTGATGCGAATAAGCACCAAATGCATCATATATAATTTCAAAGCTGTCAAAAAA]


>consensus_7610#1 ATTCTTGTCTGGGTGTCCCGCTGTGTTCTCTGTGAGGCCCTTTGCGGGATGCTTCTGTGG TCGGTTGTCGCGTCGGGCGTACCCAGCGGAACGGTCGTCGTCACCTGACTTCTAGTCCTT CTGGCACCATCGTGCCTCGGCTACGGCATCATAGAAGCTCGACGGCCGCCACTTCATAGG GCCACTTATGCAAATGACCATGATGGTTCCACCCTCCTTCACCCAAGAACTCCACTACCT GAACAAGGAGGACAAGTGCTGCTCCGCTGGCTGGTGGTGAAGCACAGAGACGCGGTGTAT GGTTGGAGTTCATCAACGAGGACGACGGGAGGAGGGAGATGACGGACTTCCGCTACCGCA CCAAAGACGAGGCCAGCGATGTCGATGAGTATGACGACGACGATGATGACTATGAATATG AGATCGACGAGGAGTAAGCTTTCATCGCATCTCTGCTCCCATACCGCCCAGGCAGATATT GTTGTCCACCAATAGGGAATATCTTGAAATGTGATTTTTTTTATTTCTTCCCAGTTGTTC TAGATCATGGATAGCAAGTAGTAGCTTGTTTGTTTATCTGACGTTTGTGATGCGAATAAG CACCAAATGCATCATATATAATTTCAAAGCTGTCAAAAAA



consensusID : consensus_7610#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence
                              [NNCNGNGNACGCGTGGGCAAGGCGGCGGCGGCGGCGGCCGGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGANNGCGAGAGGGTTTTCGGAGCGGGAGGGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGCCATGGCGGACTCGTGGGGCGGGTGGCGCGGCGGGCGTACCAGCGGAACGGCGTCGTCACCGACGTCAAGTCCTTCGGCACCATCTGCCTCGGCTACGGCATCAAGAAGCTCGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCANCCTCCTTCANCCAAGAACTCCACTACCTGAACAAGGAGGACAGGCTGCTTCCGCTTGGCTTGGTGGTGAAGCACAGAGACGCNGTGTATTGTGTTGAGTTCATCAACGAGGACGACNGG]

[+] EMBL AU069138             [NNCNGNGNACGCGTGGGCAAGGCGGCGGCGGCGGCGGCCGGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGANNGCGAGAGGGTTTTCGGAGCGGGAGGGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGCCATGGCGGACTCGTGGGGCGGGTGGCGCGGCGGGCGTACCAGCGGAACGGCGTCGTCACCGACGTCAAGTCCTTCGGCACCATCTGCCTCGGCTACGGCATCAAGAAGCTCGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCANCCTCCTTCANCCAAGAACTCCACTACCTGAACAAGGAGGACAGGCTGCTTCCGCTTGGCTTGGTGGTGAAGCACAGAGACGCNGTGTATTGTGTTGAGTTCATCAACGAGGACGACNGG]


>consensus_7610#2 NNCNGNGNACGCGTGGGCAAGGCGGCGGCGGCGGCGGCCGGCGGAGAGGCGGGTGAAGAG CCAGCGAGCGGGANNGCGAGAGGGTTTTCGGAGCGGGAGGGGAAGATGCCGCTCTACGAC TGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGCCATGGCGGACTCGTGGGGCGGG TGGCGCGGCGGGCGTACCAGCGGAACGGCGTCGTCACCGACGTCAAGTCCTTCGGCACCA TCTGCCTCGGCTACGGCATCAAGAAGCTCGACGGCCGCCACTTCAAGGGCCAACTTATGC AAATGACCATGATGGTTCCANCCTCCTTCANCCAAGAACTCCACTACCTGAACAAGGAGG ACAGGCTGCTTCCGCTTGGCTTGGTGGTGAAGCACAGAGACGCNGTGTATTGTGTTGAGT TCATCAACGAGGACGACNGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7610#0      ACCAAGTCCGCGTCTCCGAGATCGTCGAGC-CGAGCACACAAGGCGGCGGCGGCGGCGGC 59
consensus_7610#2      ----------------------NNCNGNGNACGCGTGGGCAAGGCGGCGGCGGCGGCGGC 38
consensus_7610#1      ------------------------------------------------------------
                                                                                  

consensus_7610#0      CGGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGAGGGCGAGAGGGTTTTCGGAGCGGGA 119
consensus_7610#2      CGGCGGAGAGGCGGGTGAAGAGCCAGCGAGCGGGANNGCGAGAGGGTTTTCGGAGCGGGA 98
consensus_7610#1      ------------------------------------------------------------
                                                                                  

consensus_7610#0      GGGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGC 179
consensus_7610#2      GGGGAAGATGCCGCTCTACGACTGCATGCTGCTGGTGAAGCCGCTGGTGACCAGGGAGGC 158
consensus_7610#1      --------------------ATTCTTGTCTGGGTGTCCCGCTG-TGTTCTCTGTGAGGCC 39
                                          * *     ***   **   ** * ** *  *   *  * *

consensus_7610#0      CATGGCGGAG--CTCGTGGGG-CGGGTGGCGCGGCGGGCGTACC-AGCGGAACGG-CGTC 234
consensus_7610#2      CATGGCGGA---CTCGTGGGG-CGGGTGGCGCGGCGGGCGTACC-AGCGGAACGG-CGTC 212
consensus_7610#1      CTTTGCGGGATGCTTCTGTGGTCGGTTGTCGCGTCGGGCGTACCCAGCGGAACGGTCGTC 99
                      * * ****    **  ** ** *** ** **** ********** ********** ****

consensus_7610#0      GTCACC-GACGTCAAGTCCTTC-GGCACCATC-TGCCTCGGCTACGGCATCA-AGAAGCT 290
consensus_7610#2      GTCACC-GACGTCAAGTCCTTC-GGCACCATC-TGCCTCGGCTACGGCATCA-AGAAGCT 268
consensus_7610#1      GTCACCTGACTTCTAGTCCTTCTGGCACCATCGTGCCTCGGCTACGGCATCATAGAAGCT 159
                      ****** *** ** ******** ********* ******************* *******

consensus_7610#0      CGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCACCCTCCTT 350
consensus_7610#2      CGACGGCCGCCACTTCAAGGGCCAACTTATGCAAATGACCATGATGGTTCCANCCTCCTT 328
consensus_7610#1      CGACGGCCGCCACTTCATAGGGCCACTTATGCAAATGACCATGATGGTTCCACCCTCCTT 219
                      *****************  ** * **************************** *******

consensus_7610#0      CACCCAAGAACTCCACTACCTGAACAAGGAGGACAGG--CTGCT-CCGCTGG--CTGGTG 405
consensus_7610#2      CANCCAAGAACTCCACTACCTGAACAAGGAGGACAGG--CTGCTTCCGCTTGGCTTGGTG 386
consensus_7610#1      CACCCAAGAACTCCACTACCTGAACAAGGAGGACAAGTGCTGCT-CCGCTGG--CTGGTG 276
                      ** ******************************** *  ***** ***** *   *****

consensus_7610#0      GTGAAGCACAGAGACGCGGTGTATGGTGTGGAGTTCATCAACGAGGACGACGGGAGGAGG 465
consensus_7610#2      GTGAAGCACAGAGACGCNGTGTATTGTGTTGAGTTCATCAACGAGGACGACNGG------ 440
consensus_7610#1      GTGAAGCACAGAGACGCGGTGTATGGT-TGGAGTTCATCAACGAGGACGACGGGAGGAGG 335
                      ***************** ****** ** * ********************* **      

consensus_7610#0      GAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGAC 525
consensus_7610#2      ------------------------------------------------------------
consensus_7610#1      GAGATGACGGACTTCCGCTACCGCACCAAAGACGAGGCCAGCGATGTCGATGAGTATGAC 395
                                                                                  

consensus_7610#0      GACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTG 585
consensus_7610#2      ------------------------------------------------------------
consensus_7610#1      GACGACGATGATGACTATGAATATGAGATCGACGAGGAGTAAGCTTTCATCGCATCTCTG 455
                                                                                  

consensus_7610#0      CTCCCATACCGGCAGGCAGATATTGTTGTCCACCAAATAGGGAATATCTTGAAATGTGAT 645
consensus_7610#2      ------------------------------------------------------------
consensus_7610#1      CTCCCATACCGCCCAGGCAGATATTGTTGTCCACCAATAGGGAATATCTTGAAATGTGAT 515
                                                                                  

consensus_7610#0      TTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAGCAAGTAGTAGCTTGTTTGTTT 705
consensus_7610#2      ------------------------------------------------------------
consensus_7610#1      TTTTTTTATTTCTTCCCAGTTGTTCTAGATCATGGATAGCAAGTAGTAGCTTGTTTGTTT 575
                                                                                  

consensus_7610#0      ATCTGACGTTTGTGATGCGAATAAGCACCAAAATGAATCATATATAATTTCAAAGCTGTC 765
consensus_7610#2      ------------------------------------------------------------
consensus_7610#1      ATCTGACGTTTGTGATGCGAATAAGCACCAAATGCATCATATATAATTTCAAAGCTGTCA 635
                                                                                  

consensus_7610#0      AAAAATTTTG 775
consensus_7610#2      ----------
consensus_7610#1      AAAAA----- 640
                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)