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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1606 fasta sequence
[CGCACCACACACCACCACCATCAAACTCCTTGCATTTCTACCAACGATGCGGCACGCGGCGCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGCAGCCGTACGACTACCCGACGGCGAAGCCGTCCACGACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGTCGCCTACACCGACGGCTCCGTGGCGCGCGCCGCGCTGCTGCGCCTCAACCCGGCGCGCCTCGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGCCGACTTCCTCCTCGGCGTCGCCGTCGTGTACTGCAACAGCGGCGCCGGGATCACCGCGGTCACCACCGGCATCCCGCAGGTGGTGTGGTCGGCCAACCGCGCCGCCCCCGTCGGGGACGGCGCCACCGCGGAGCTCACGGCGGACGGCGACCTGGTCCTGAGATCGCCCGGCGGCAAGGTGCTATGGTCGGCCGGCGCGGCGGGGCGCGGCGTCTCCGGGATGAGCATCAACAGCGACGGCAACCTGGTGCTGTTCGACGGGAGCAACCGGACGGTGTGGCAGTCGTTCGACCACCCAACCGACACGCTCGTCGTCGGGCAGTCGCTGAAGCAGGGCGCACGGCTCACCGCCAACGCGTCGTTTGACAACTCGTCGGAGGGCAGGATATACCTCGCCGTCGCCGACGACGGC-CTCGCCGCCTACGTCGACGCCAAGCCGCCACAGCGCTACTACGTCCTTGGCTACAGCAAGAACGCCGGCGCCTACGCGGCGTACACCAACGGCAGCCTCGCCGTGCTCGACCGCCCCGGCGGCCAGCAGCTGGCCACCGTCCAGCTCCCCGCCGTCGCCGCCGGCACGGTGCAGTACATGCGGCTGGAGCACGACGGCCACCTCCGCCTCTACGAGTGGCGCTCGAACGGGATGAGATGGGAGGCCACCGGCGACGTGCTCCACCCCTACCCCGGCGACTGCGCGTACCCGACGGTGTGCGGCGCGTACGGCGTGTGCACGGACATGCAGTGCAGCTGCCCCGACGCCGCCAACTTCCGGGCGGTGGACTTCCGGCGGCCGAACCGCGGCTGCGTCCCGACG-TCGCCGCCGGCGCCGCCGGCGACATGCCGTTCCCGGCGCGCGCGGCACCGG-CTGGTGTCGCTGCGCGACACGGCCTACTTCAACAGCCACGACACCAGCAT-GCGGACGCTGGAGAGGGTGGGCGAGGCGGCGTGCAAGGCAGCGTGCTTGGGCGACTGCGCGTGCATGGCGGCGCAGTTCGTGTACGGATTCGACCCCAACGACGGCTTCTGCTACCTGCAGTCGGAGGTGTTGTCGCTGGAGACGATGCAGCCGGAGGTGTTTCACTACAACTCCTCCATGCATATCAAGATTGCCCAGGGCAGGTTGCCAAGACGATTCTGATCGCCTTTTTACAGTCTACTATACTATATCAAGGAGGAGAAATCCTTGTAAATACATACATGAATAAATTCACGAGAACTAGCTAGGATTCTCGATTCATATGTTTTTGTATTCAACATTTGTTTGTGGGTTTTAACAAAATATAAAGAAAACATTTTTTTTTAAAAA]
[+] EMBL AK107370 [CGCACCACACACCACCACCATCAAACTCCTTGCATTTCTACCAACGATGCGGCACGCGGCGCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGCAGCCGTACGACTACCCGACGGCGAAGCCGTCCACGACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGTCGCCTACACCGACGGCTCCGTGGCGCGCGCCGCGCTGCTGCGCCTCAACCCGGCGCGCCTCGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGCCGACTTCCTCCTCGGCGTCGCCGTCGTGTACTGCAACAGCGGCGCCGGGATCACCGCGGTCACCACCGGCATCCCGCAGGTGGTGTGGTCGGCCAACCGCGCCGCCCCCGTCGGGGACGGCGCCACCGCGGAGCTCACGGCGGACGGCGACCTGGTCCTGAGATCGCCCGGCGGCAAGGTGCTATGGTCGGCCGGCGCGGCGGGGCGCGGCGTCTCCGGGATGAGCATCAACAGCGACGGCAACCTGGTGCTGTTCGACGGGAGCAACCGGACGGTGTGGCAGTCGTTCGACCACCCAACCGACACGCTCGTCGTCGGGCAGTCGCTGAAGCAGGGCGCACGGCTCACCGCCAACGCGTCGTTTGACAACTCGTCGGAGGGCAGGATATACCTCGCCGTCGCCGACGACGGC CTCGCCGCCTACGTCGACGCCAAGCCGCCACAGCGCTACTACGTCCTTGGCTACAGCAAGAACGCCGGCGCCTACGCGGCGTACACCAACGGCAGCCTCGCCGTGCTCGACCGCCCCGGCGGCCAGCAGCTGGCCACCGTCCAGCTCCCCGCCGTCGCCGCCGGCACGGTGCAGTACATGCGGCTGGAGCACGACGGCCACCTCCGCCTCTACGAGTGGCGCTCGAACGGGATGAGATGGGAGGCCACCGGCGACGTGCTCCACCCCTACCCCGGCGACTGCGCGTACCCGACGGTGTGCGGCGCGTACGGCGTGTGCACGGACATGCAGTGCAGCTGCCCCGACGCCGCCAACTTCCGGGCGGTGGACTTCCGGCGGCCGAACCGCGGCTGCGTCCCGACG TCGCCGCCGGCGCCGCCGGCGACATGCCGTTCCCGGCGCGCGCGGCACCGG CTGGTGTCGCTGCGCGACACGGCCTACTTCAACAGCCACGACACCAGCAT GCGGACGCTGGAGAGGGTGGGCGAGGCGGCGTGCAAGGCAGCGTGCTTGGGCGACTGCGCGTGCATGGCGGCGCAGTTCGTGTACGGATTCGACCCCAACGACGGCTTCTGCTACCTGCAGTCGGAGGTGTTGTCGCTGGAGACGATGCAGCCGGAGGTGTTTCACTACAACTCCTCCATGCATATCAAGATTGCCCAGGGCAGGTTGCCAAGACGATTCTGATCGCCTTTTTACAGTCTACTATACTATATCAAGGAGGAGAAATCCTTGTAAATACATACATGAATAAATTCACGAGAACTAGCTAGGATTCTCGATTCATATGTTTTTGTATTCAACATTTGTTTGTGGGTTTTAACAAAATATAAAGAAAAC ]
[+] EMBL C22453 [ GAGCATCAACAGCGACGGCAACCTGGTGCTGTTCGACGGGAGCAACCGGACGGTGTGGCAGTCGTTCGACCACCCAACCGACACGCTCGTCGTCGGGCAGTCGCTGAAGCAGGGCGCACGGCTCACCGCCAACGCGTCGTTTGACAACTCGTCGGAGGGCAGGATATACCTCGCCGTCGCCGACGACGGCTTTCGCCGCCTACGTCGACGCCAAGCCGCCACAGCGCTACTACGTCCTTGGCTACAGCAAGAACGCCGNCGCCTACGCGGCGTACACCAACGGCAGCCTCGCCGTGCTCGA ]
[+] EMBL CB000916 [ CGCCGGCACGGTGCAGTACATGCGGCTGGAGCACGACGGCCACCTCCGCCTCTACGAGTGGCGCTCGAACGGGATGAGATGGGAGGCCACCGGCGACGTGCTCCACCCCTACCCCGGCGACTGCGCGTACCCGACGGTGTGCGGCGCGTACGGCGTGTGCACGGACATGCAGTGCAGCTGCCCCGACGCCGCCAACTTCCGGGCGGTGGACTTCCGGCGGCCGAACCGCGGCTGCGTCCCGACG TCGCCGCCGGCGCCGCCGGCGACATGCCGTTCCCGGCGCGCGCGGCACCGG CTGGTGTCGCTGCGCGACACGGCCTACTTCAACAGCCACGACACCAGCATGGCGGACGCTGGAGAGGGTGGGCGAGGCGGCGTGCAAGGCAGCGTGCTTGGGCGACTGCGCGTGCATGGCGGCGCAGTTCGTGTACGGATTCGACCCCAACGACGGCTTCTGCTACCTGCAGTCGGAGGTGTTGTCGCTGG ]
[+] EMBL C96934 [ ACATGCAGTGCAGCTGCCCCGACGCCGCAAACTTCCGGGCGGTGGACTTCCGGCGGCCGAACCGCGGCTGCGTCCCGACGTTCGCC CCGGCNCCGCCGGCGACATGCCGTTCCCGGCGCGCGCGGCACCGGNCTTG GT TCTGCGCGACACGGCCTACTTCAACAGCCACGACACCAGCAT GCGGACGCTGGAGAGGGTGGGCGAGGCGGCGTGCAAGGCAGCGTGCTTGGGCGACTGCGCGTGCATGGCGGCGCAGTTCGTGTACGGATTCGACCCCAACGACGGCTTCTGCTACCTGCAGTCGGAGGTGTTGTCGCTGGAGACGATGCAGCCGGAGGTGTTTCACTACAACTCCTCCATGCATATCAAGATTGCCCAGGGCAGGTTGCCAAGACGATTCTGATCGCCTTTTTACAGTCTACTATACTATATCAAGGAGGAGAAATCCTTGTAAATACATACATGAATAAATTCACGAGAACTAGCTAGGATTCTCGATTCATATGTTTTTGTATTCAACATTTGTTTGTGGGTTTTAACAAAATATAAAGAAAACATTTTTTTTTAAAAA]
consensusID : consensus_7611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence
[ATGCGGCACGGGCGCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGAGCGTNANCGACTACCCGACGGCGAAGCCANCGNACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGTCGCCTACACCGACGGCTCCGTGGNGCGCGCCGGTNGCTGCGNCTCAACCCGGCGCGNCTCGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGCGAACTTCCTCCTCGGCGTCGCGTCGTGTACTNCAACANCGGCGCCGGGATCAACGCGGTNAACAACGGCATCCCGCAGTGGGTGT]
[+] EMBL C26818 [ATGCGGCACGGGCGCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGAGCGTNANCGACTACCCGACGGCGAAGCCANCGNACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGTCGCCTACACCGACGGCTCCGTGGNGCGCGCCGGTNGCTGCGNCTCAACCCGGCGCGNCTCGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGCGAACTTCCTCCTCGGCGTCGCGTCGTGTACTNCAACANCGGCGCCGGGATCAACGCGGTNAACAACGGCATCCCGCAGTGGGTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7611#0 CGCACCACACACCACCACCATCAAACTCCTTGCATTTCTACCAACGATGCGGCACGCGGC 60
consensus_7611#1 ----------------------------------------------ATGCGGCACG-GGC 13
********** ***
consensus_7611#0 GCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGCAGCCGTACGACTA 120
consensus_7611#1 GCTGCTCGGCGTGGGCTTCGCGCTCTGCCTCCTCCGCGCGCAGGCGAGCGTNANCGACTA 73
********************************************** ******
consensus_7611#0 CCCGACGGCGAAGCCGTCCACGACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGT 180
consensus_7611#1 CCCGACGGCGAAGCCANCGN--ACGTGGGCGAACACCGACGCCGCGCTGCGCCACCACGT 131
*************** * **************************************
consensus_7611#0 CGCCTACACCGACGGCTCCGTGGCGCGCGCCGCGCTGCTGCGCCTCAACCCGGCGCGCCT 240
consensus_7611#1 CGCCTACACCGACGGCTCCGTGGNGCGCGCCG-GTNGCTGCGNCTCAACCCGGCGCGNCT 190
*********************** ******** * ****** ************** **
consensus_7611#0 CGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGC 300
consensus_7611#1 CGGCCCCTCCTTCGCCTTCGGCTTCTTCTGCACCAACCACCGCGCCGGGGCGCCGTGCGC 250
************************************************************
consensus_7611#0 CGACTTCCTCCTCGGCGTCGCCGTCGTGTACTGCAACAGCGGCGCCGGGATCACCGCGGT 360
consensus_7611#1 GAACTTCCTCCTCGGCGTCGC-GTCGTGTACTNCAACANCGGCGCCGGGATCAACGCGGT 309
******************* ********** ***** ************** ******
consensus_7611#0 CACCACCGGCATCCCGCAGGTGGTGTGGTCGGCCAACCGCGCCGCCCCCGTCGGGGACGG 420
consensus_7611#1 NAACAACGGCATCCCGCAGTGGGTGT---------------------------------- 335
* ** ************* *****
consensus_7611#0 CGCCACCGCGGAGCTCACGGCGGACGGCGACCTGGTCCTGAGATCGCCCGGCGGCAAGGT 480
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 GCTATGGTCGGCCGGCGCGGCGGGGCGCGGCGTCTCCGGGATGAGCATCAACAGCGACGG 540
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 CAACCTGGTGCTGTTCGACGGGAGCAACCGGACGGTGTGGCAGTCGTTCGACCACCCAAC 600
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 CGACACGCTCGTCGTCGGGCAGTCGCTGAAGCAGGGCGCACGGCTCACCGCCAACGCGTC 660
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 GTTTGACAACTCGTCGGAGGGCAGGATATACCTCGCCGTCGCCGACGACGGCCTCGCCGC 720
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 CTACGTCGACGCCAAGCCGCCACAGCGCTACTACGTCCTTGGCTACAGCAAGAACGCCGG 780
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 CGCCTACGCGGCGTACACCAACGGCAGCCTCGCCGTGCTCGACCGCCCCGGCGGCCAGCA 840
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 GCTGGCCACCGTCCAGCTCCCCGCCGTCGCCGCCGGCACGGTGCAGTACATGCGGCTGGA 900
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 GCACGACGGCCACCTCCGCCTCTACGAGTGGCGCTCGAACGGGATGAGATGGGAGGCCAC 960
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 CGGCGACGTGCTCCACCCCTACCCCGGCGACTGCGCGTACCCGACGGTGTGCGGCGCGTA 1020
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 CGGCGTGTGCACGGACATGCAGTGCAGCTGCCCCGACGCCGCCAACTTCCGGGCGGTGGA 1080
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 CTTCCGGCGGCCGAACCGCGGCTGCGTCCCGACGTCGCCGCCGGCGCCGCCGGCGACATG 1140
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 CCGTTCCCGGCGCGCGCGGCACCGGCTGGTGTCGCTGCGCGACACGGCCTACTTCAACAG 1200
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 CCACGACACCAGCATGCGGACGCTGGAGAGGGTGGGCGAGGCGGCGTGCAAGGCAGCGTG 1260
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 CTTGGGCGACTGCGCGTGCATGGCGGCGCAGTTCGTGTACGGATTCGACCCCAACGACGG 1320
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 CTTCTGCTACCTGCAGTCGGAGGTGTTGTCGCTGGAGACGATGCAGCCGGAGGTGTTTCA 1380
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 CTACAACTCCTCCATGCATATCAAGATTGCCCAGGGCAGGTTGCCAAGACGATTCTGATC 1440
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 GCCTTTTTACAGTCTACTATACTATATCAAGGAGGAGAAATCCTTGTAAATACATACATG 1500
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 AATAAATTCACGAGAACTAGCTAGGATTCTCGATTCATATGTTTTTGTATTCAACATTTG 1560
consensus_7611#1 ------------------------------------------------------------
consensus_7611#0 TTTGTGGGTTTTAACAAAATATAAAGAAAACATTTTTTTTTAAAAA 1606
consensus_7611#1 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||