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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1403 fasta sequence
[TTTCTCATCCGCTATTGGGCGCGTGGAGACGGAATGCGGCGGCGGCTCCCTCGGACAGCTAGGGCAGTGGCGGCGCCCTCCCGTGCCTGGAGCAGGGCAGTGGCGGCACCCTCCCATGCCTAGAGCAGGGCAGCAACGATGGAAGGGCCAGGCGGCACCCTCCCGTGCATTGAGAGTTTCATAGTTTGATTGCTCGGTTTTGGTTTTTATTGCGGTAATTAATCATGGTCACTAGATTCTGGTTTGATTGCTCAGTTTTGGTTTTCATGTGATTAGGTAGTAAGCCTAGCATATATCATTGCAGCTTGATAGTGTTAATTAGTACTAGTTTGAGACAATCGGTTTTTGTTTTGCATAAACAAAACAGACATTCTGTATTGGCAACTCGCTCGGTGCCTGGCCGACCAATCATCATATCAGTAAAATTGTTGGACATTTTGCAAAGTGGGGTAGTAGGCTCACATCAAAATTGACTAGGAATAGGTCACCAGAAAACAGGCAAAAATCTGAAACTTGAGTATCACACTGAATAATTTGCATAGTGGAGGAGTAAGATATGTTGCATGTTGTATATTCAGCTGTGATACTTCCACTGAAAATAGTTGAAACAACTAGAGAAACATAAGGCTTTGGCTTCCCCCTGACAAATCTGAACTGAACCACCTGGTGGCTTCTCTTTTTCTGTCACTACAAGACAGAGCCAAATCTGAACTGAACCACATTTGGTTTCTCTCTTTTTTTTCTTTTATATGCACTACATGACAACACAATCAGTTGCAAAAATCAGATATCTGTTCTTGGCACACTTGGCAGCTGGCAACTTCCGCTTTTGTGCAGGAGGCCAATGCAGAATTGCAGGTGAGATATATGGGGTGCGGCATGAATGGCAATTGAAGATTGGAAGAGCATGAACGAGAGGATGCTGAAGAAGTGGCATAGAACAATTAATGACAAGATAATGAATGTAGCCTTTCTTTGTAATTCCTACTATGTAGTATATACACTATTAGGAGTTTGTAAAGATTCAGAACACCTTGTATCCTGAGAACTAGTTTTGCCAGATGTCAAGTTATCCTGAGAACTATTGTAACCTTGTGCAAAATACAAAAGAGGAAAATTGATTGCCTAAAAGGATGGTAAATGCAGCAGGCAGAAGTGGATGGTGCTAAAAGGATTGTAGTTTGATGAATGTAGCCTTCGCTGTTAATCCATACAATGTAGTCTGTACACTCTTAGGAGTATGCAAGGATTGTAGTCTAGATGCTGTAAGTTTGGACCGCATTTTTGGTCAAATTGCAAGGAAACTCATATCGCTATGTAATCTGTACAATGTATTTCTTTTATTTGAAATACATATGGCATGTTGGATGTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK066465 [TTTCTCATCCGCTATTGGGCGCGTGGAGACGGAATGCGGCGGCGGCTCCCTCGGACAGCTAGGGCAGTGGCGGCGCCCTCCCGTGCCTGGAGCAGGGCAGTGGCGGCACCCTCCCATGCCTAGAGCAGGGCAGCAACGATGGAAGGGCCAGGCGGCACCCTCCCGTGCATTGAGAGTTTCATAGTTTGATTGCTCGGTTTTGGTTTTTATTGCGGTAATTAATCATGGTCACTAGATTCTGGTTTGATTGCTCAGTTTTGGTTTTCATGTGATTAGGTAGTAAGCCTAGCATATATCATTGCAGCTTGATAGTGTTAATTAGTACTAGTTTGAGACAATCGGTTTTTGTTTTGCATAAACAAAACAGACATTCTGTATTGGCAACTCGCTCGGTGCCTGGCCGACCAATCATCATATCAGTAAAATTGTTGGACATTTTGCAAAGTGGGGTAGTAGGCTCACATCAAAATTGACTAGGAATAGGTCACCAGAAAACAGGCAAAAATCTGAAACTTGAGTATCACACTGAATAATTTGCATAGTGGAGGAGTAAGATATGTTGCATGTTGTATATTCAGCTGTGATACTTCCACTGAAAATAGTTGAAACAACTAGAGAAACATAAGGCTTTGGCTTCCCCCTGACAAATCTGAACTGAACCACCTGGTGGCTTCTCTTTTTCTGTCACTACAAGACAGAGCCAAATCTGAACTGAACCACATTTGGTTTCTCTCTTTTTTTTCTTTTATATGCACTACATGACAACACAATCAGTTGCAAAAATCAGATATCTGTTCTTGGCACACTTGGCAGCTGGCAACTTCCGCTTTTGTGCAGGAGGCCAATGCAGAATTGCAGGTGAGATATATGGGGTGCGGCATGAATGGCAATTGAAGATTGGAAGAGCATGAACGAGAGGATGCTGAAGAAGTGGCATAGAACAATTAATGACAAGATAATGAATGTAGCCTTTCTTTGTAATTCCTACTATGTAGTATATACACTATTAGGAGTTTGTAAAGATTCAGAACACCTTGTATCCTGAGAACTAGTTTTGCCAGATGTCAAGTTATCCTGAGAACTATTGTAACCTTGTGCAAAATACAAAAGAGGAAAATTGATTGCCTAAAAGGATGGTAAATGCAGCAGGCAGAAGTGGATGGTGCTAAAAGGATTGTAGTTTGATGAATGTAGCCTTCGCTGTTAATCCATACAATGTAGTCTGTACACTCTTAGGAGTATGCAAGGATTGTAGTCTAGATGCTGTAAGTTTGGACCGCATTTTTGGTCAAATTGCAAGGAAAC ]
[+] EMBL CB660875 [ CGGCGGCTCCCTCGGACAGCTAGGGCAGTGGCGGCGCCCTCCCGTGCCTGGAGCAGGGCAGTGGCGGCACCCTCCCATGCCTAGAGCAGGGCAGCAACGATGGAAGGGCCAGGCGGCACCCTCCCGTGCATTGAGAGTTTCATAGTTTGATTGCTCGGTTTTGGTTTTTATTGCGGTAATTAATCATGGTCACTAGATTCTGGTTTGATTGCTCAGTTTTGGTTTTCATGTGATTAGGTAGTAAGCCTAGCATATATCATTGCAGCTTGATAGTGTTAATTAGTACTAGTTTGAGACAATCGGTTTTTGTTTTGCATAAACAAAACAGACATTCTGTATTGGCAACTCGCTCGGTGCCTGGCCGACCAATCATCATATCAGTAAAATTGTTGGACATTTTGCAAAGTGGGGTAGTAGGCTCACATCAAAATTGACTAGGAATAGGTCACCAGAAAACAGGCAAAAATCTGAAACTTGAGTATCACACTGAATAATTTGCATAGTGGAGGAGTAAGATATGTTGCATGTTGTATATTCAGCTGTGATACTTCCACTGAAAATAGTTGAAACAACTAGAGAAACATAAGGCTTTGGCTTCCCCCTGACAAATCTGAACTGAACCACCTGGTGGCTTCTCTTTTTCTGTCACTACAAGACAGAGCCAAATCTGAACTGAACCACATTTGGTTTCTCTCTTTTTTTTCTTTTATATGCACTACATGACAACACAATCAGTTGCAAAAATCAGATATCTGTTCTTGGCACACTTGGCAGCTGGCAACTTCCGCTTTTGTGCAGGAGGCCGAT ]
[-] EMBL CB660876 [ CATATATCATGGCAGCTTGATAGTGTTAATTAGTACTAGTTTGAGACAATCGGTTTTTGTTTTGCATAAACAAAACAGACATTCTGTATTGGCAACTCGCTCGGTGCCTGGCCGACCAATCATCATATCAGTAAAATTGTTGGACATTTTGCAAAGTGGGGTAGTAGGCTCACATCAAAATTGACTAGGAATAGGTCACCAGAAAACAGGCAAAAATCTGAAACTTGAGTATCACACTGAATAATTTGCATAGTGGAGGAGTAAGATATGTTGCATGTTGTATATTCAGCTGTGATACTTCCACTGAAAATAGTTGAAACAACTAGAGAAACATAAGGCTTTGGCTTCCCCCTGACAAATCTGAACTGAACCACCTGGTGGCTTCTCTTTTTCTGTCACTACAAGACAGAGCCAAATCTGAACTGAACCACATTTGGTTTCTCTCTTTTTTTTCTTTTATATGCACTACATGACAACACAATCAGTTGCAAAAATCAGATATCTGTTCTTGGCACACTTGGCAGCTGGCAACTTCCGCTTTTGTGCAGGAGGCCAATGCAGAATTGCAGGTGAGATATATGGGGTGCGGCATGAATGGCAATTGAAGATTGGAAGAGCATGAACGAGAGGATGCTGAAGAAGTGGCATAGAACAATTAATGACAAGATAATGAATGTAGCCTTTCTTTGTAATTCCTACTATGTAGTATATACACTATTAGGAGTTTGTAAAGATTCAGAACACCTTGTATCCTGAGAACTAGTTTTGCCAGATGTCAAGTTATCCTGAGAACTATTGTAACCTTG ACAGAAT CAAAAGAGGAAAA ]
[+] EMBL CF330222 [ TGTTAATCCATACAATGTAGTCTGTACACTCTTAGGAGTATGCAAGGATTGTAGTCTAGATGCTGTAAGTTTGGACCGCATTTTTGGTCAAATTGCAAGGAAACTCATATCGCTATGTAATCTGTACAATGTATTTCTTTTATTTGAAATACATATGGCATGTTGGATGTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_7614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence
[TCTTTACACTTGGCAGCTGGCAACTTGAGGCCAATGCAGAATTGCAGGTGAGATATATGGGGTGCGGCATGAATGGCAATTGAAGATTGGAAGAGCATGAACGAGAGGATGCTGAAGAAGTGACATAGAACAATCAATGACAAGATAATGAATGTAGCCTTTCTTTGTAATTTCTAATAGTGTATATACTACATAGTAGGAATTACACTATTAGGAGTTTGTAAAGATTCAGAACACCTTGTATCCTGACAACTAGTTTTGCCAGATGTCAAGTTATCCTGACAACTATTGTAACCTTGTGCAAAATACAAAAGAGGAAAA]
[+] EMBL CB642936 [TCTTTACACTTGGCAGCTGGCAACTTGAGGCCAATGCAGAATTGCAGGTGAGATATATGGGGTGCGGCATGAATGGCAATTGAAGATTGGAAGAGCATGAACGAGAGGATGCTGAAGAAGTGACATAGAACAATCAATGACAAGATAATGAATGTAGCCTTTCTTTGTAATTTCTAATAGTGTATATACTACATAGTAGGAATTACACTATTAGGAGTTTGTAAAGATTCAGAACACCTTGTATCCTGACAACTAGTTTTGCCAGATGTCAAGTTATCCTGACAACTATTGTAACCTTGTGCAAAATACAAAAGAGGAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7614#0 TTTCTCATCCGCTATTGGGCGCGTGGAGACGGAATGCGGCGGCGGCTCCCTCGGACAGCT 60
consensus_7614#1 ------------------------------------------------------------
consensus_7614#0 AGGGCAGTGGCGGCGCCCTCCCGTGCCTGGAGCAGGGCAGTGGCGGCACCCTCCCATGCC 120
consensus_7614#1 ------------------------------------------------------------
consensus_7614#0 TAGAGCAGGGCAGCAACGATGGAAGGGCCAGGCGGCACCCTCCCGTGCATTGAGAGTTTC 180
consensus_7614#1 ------------------------------------------------------------
consensus_7614#0 ATAGTTTGATTGCTCGGTTTTGGTTTTTATTGCGGTAATTAATCATGGTCACTAGATTCT 240
consensus_7614#1 ------------------------------------------------------------
consensus_7614#0 GGTTTGATTGCTCAGTTTTGGTTTTCATGTGATTAGGTAGTAAGCCTAGCATATATCATT 300
consensus_7614#1 ------------------------------------------------------------
consensus_7614#0 GCAGCTTGATAGTGTTAATTAGTACTAGTTTGAGACAATCGGTTTTTGTTTTGCATAAAC 360
consensus_7614#1 ------------------------------------------------------------
consensus_7614#0 AAAACAGACATTCTGTATTGGCAACTCGCTCGGTGCCTGGCCGACCAATCATCATATCAG 420
consensus_7614#1 ------------------------------------------------------------
consensus_7614#0 TAAAATTGTTGGACATTTTGCAAAGTGGGGTAGTAGGCTCACATCAAAATTGACTAGGAA 480
consensus_7614#1 ------------------------------------------------------------
consensus_7614#0 TAGGTCACCAGAAAACAGGCAAAAATCTGAAACTTGAGTATCACACTGAATAATTTGCAT 540
consensus_7614#1 ------------------------------------------------------------
consensus_7614#0 AGTGGAGGAGTAAGATATGTTGCATGTTGTATATTCAGCTGTGATACTTCCACTGAAAAT 600
consensus_7614#1 ------------------------------------------------------------
consensus_7614#0 AGTTGAAACAACTAGAGAAACATAAGGCTTTGGCTTCCCCCTGACAAATCTGAACTGAAC 660
consensus_7614#1 ------------------------------------------------------------
consensus_7614#0 CACCTGGTGGCTTCTCTTTTTCTGTCACTACAAGACAGAGCCAAATCTGAACTGAACCAC 720
consensus_7614#1 ------------------------------------------------------------
consensus_7614#0 ATTTGGTTTCTCTCTTTTTTTTCTTTTATATGCACTACATGACAACACAATCAGTTGCAA 780
consensus_7614#1 ------------------------------------------------------------
consensus_7614#0 AAATCAGATATCTGTTCTTGGCACACTTGGCAGCTGGCAACTTCCGCTTTTGTGCAGGAG 840
consensus_7614#1 ---------------TCTT--TACACTTGGCAGCTGGCAACTT--------------GAG 29
**** ********************* ***
consensus_7614#0 GCCAATGCAGAATTGCAGGTGAGATATATGGGGTGCGGCATGAATGGCAATTGAAGATTG 900
consensus_7614#1 GCCAATGCAGAATTGCAGGTGAGATATATGGGGTGCGGCATGAATGGCAATTGAAGATTG 89
************************************************************
consensus_7614#0 GAAGAGCATGAACGAGAGGATGCTGAAGAAGTGGCATAGAACAATTAATGACAAGATAAT 960
consensus_7614#1 GAAGAGCATGAACGAGAGGATGCTGAAGAAGTGACATAGAACAATCAATGACAAGATAAT 149
********************************* *********** **************
consensus_7614#0 GAATGTAGCCTTTCTTTGTAATTCCTA------------CTATGTAGTATA---TACACT 1005
consensus_7614#1 GAATGTAGCCTTTCTTTGTAATTTCTAATAGTGTATATACTACATAGTAGGAATTACACT 209
*********************** *** *** ***** ******
consensus_7614#0 ATTAGGAGTTTGTAAAGATTCAGAACACCTTGTATCCTGAGAACTAGTTTTGCCAGATGT 1065
consensus_7614#1 ATTAGGAGTTTGTAAAGATTCAGAACACCTTGTATCCTGACAACTAGTTTTGCCAGATGT 269
**************************************** *******************
consensus_7614#0 CAAGTTATCCTGAGAACTATTGTAACCTTGTGCAAAATACAAAAGAGGAAAATTGATTGC 1125
consensus_7614#1 CAAGTTATCCTGACAACTATTGTAACCTTGTGCAAAATACAAAAGAGGAAAA-------- 321
************* **************************************
consensus_7614#0 CTAAAAGGATGGTAAATGCAGCAGGCAGAAGTGGATGGTGCTAAAAGGATTGTAGTTTGA 1185
consensus_7614#1 ------------------------------------------------------------
consensus_7614#0 TGAATGTAGCCTTCGCTGTTAATCCATACAATGTAGTCTGTACACTCTTAGGAGTATGCA 1245
consensus_7614#1 ------------------------------------------------------------
consensus_7614#0 AGGATTGTAGTCTAGATGCTGTAAGTTTGGACCGCATTTTTGGTCAAATTGCAAGGAAAC 1305
consensus_7614#1 ------------------------------------------------------------
consensus_7614#0 TCATATCGCTATGTAATCTGTACAATGTATTTCTTTTATTTGAAATACATATGGCATGTT 1365
consensus_7614#1 ------------------------------------------------------------
consensus_7614#0 GGATGTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1403
consensus_7614#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||