These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1634 fasta sequence [GCGCCCCAAATTCCGCCTCCTCTTCTTCACTAGCTCTTCCACCCTCTCCAATCCCCTCTCCCTTTCTCTCCCTCTCCCTCTTGCCTTCGCCATGGGCTGCTTCCTTGGCTGCTTCGGGGGGGCCAAGGAGCGCCGCCGCCGCCGGAAACGCTCCCCTGCGCACTCCCCCTCCGGCCGCGCCCGGGCCACGCCGCGGCTTTCCCCGAAGAAGGCTGCCGCTGCCGCCGCGTTGGATGGAGACGTTGTTTCCGCCGCCGCGCCGCTGCTGGCGACGCTCCTGGAGTTGAGGGATTCCACTGATGACTTGTGCTTGACCGTCATCAAGAAGAAGGTG-GCGTTTGATCCCAACGTCACCACTTACGAGGCGGCTGCGATCCCGGAGGCGGAGGAGGAGGATGATGAGGAGGCCGAGCCGGCGGCGGGTGACGACAAGGATGAGGCGAGGTGGATGCTGGCACCGGATTGCGCGAAATCCGAGGCTTTCCCGCTGAACCACAGGTACAGCAACTGCGCCTACGGCGACAATGACAGCGAGTACGACGAGGACGAGGACGAGGACGAGGAGGAAGACGAGGACGAAGAGGAAGAGGCGGATGGGCTCGACGAGTGCGCGATCGACGACGAGGACGACGACGGCCTTCTCGGCATCGGGCGCGGCGAGGACGAGGCGTGCGAGTCGCTCTTCCTGCTTCCAATGAGCAAGACTAAGGAGAGCGGCGGCGGCCATGAAGCGGCTTCCGGCGTCACCTCGCCGGAGGCGCCGCCCGCGCCTCAACAGACGCGCGACGCGAATCCGGTGCTCAGCTCGGTGGAGAATCTCACCCAGTGGAAGGACGCCAAGGCCCGCGCCGCCACCGCCACCGCCGCGCCGAATGCTTCGGACAAGGAGAACAGAACGACGGCGAACTTGCTCCCCGAGCCGGCGATCCCAGCCAAGAAGAGAGAGTGGCAGGTGGTCTGCTCCGACTACAGCCCCAGCACGCCAAGCAAGCAAGAAGTCTCGGTGGACGCGAGCCTCTCGACATGGCTGGGCTCTTCGGGGACGCCGGAGAGCAACTCCGTCCGGTCCTTCTCGCCGATCAGCCGAGAAGACCGGCCGATCCTTGGGGCCCTGACCGTGGAGGACATCAAGATATCCTCTGCCAACTCGTCTCCGAGGAGGTCGAGGTCTCCGAGCCCGAGCCCTGACGACATGCCCATCCTGGGAACCGTGGGGGCTTACTGGAATTGCAGCTCCAAGGCTGGTGATCCGGTGACAAGAGGAGGGTTTATGAGGACTAGAACAAGGTTTGGGCAGAACTTTGCAGGATGAAGTGGTGAATTGCTACTGAAAGCTTCCAAGCTGGAAGCTGGAAGAGTTTGGTTTCAGGAGGAAAATTGCAGAAGATGCATACATGCTTTTGTGAGAAGAACTTACATATAGAGTCAGTGAGATTGTGGAAGTAGTGGCATGCTTTATTCAAAGATGTTGCTTGTCAAATTCTTTTATTTGTTGTAAACAATGTCCATCCATATTCTATTATGGTGATCTTTTTTTTTTTGGCGCTGTCGATATGGTGTATTGTTTCGATGTTACATTGTCAATATGGTGTATTGCACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK102410 [GCGCCCCAAATTCCGCCTCCTCTTCTTCACTAGCTCTTCCACCCTCTCCAATCCCCTCTCCCTTTCTCTCCCTCTCCCTCTTGCCTTCGCCATGGGCTGCTTCCTTGGCTGCTTCGGGGGGGCCAAGGAGCGCCGCCGCCGCCGGAAACGCTCCCCTGCGCACTCCCCCTCCGGCCGCGCCCGGGCCACGCCGCGGCTTTCCCCGAAGAAGGCTGCCGCTGCCGCCGCGTTGGATGGAGACGTTGTTTCCGCCGCCGCGCCGCTGCTGGCGACGCTCCTGGAGTTGAGGGATTCCACTGATGACTTGTGCTTGACCGTCATCAAGAAGAAGGTG GCGTTTGATCCCAACGTCACCACTTACGAGGCGGCTGCGATCCCGGAGGCGGAGGAGGAGGATGATGAGGAGGCCGAGCCGGCGGCGGGTGACGACAAGGATGAGGCGAGGTGGATGCTGGCACCGGATTGCGCGAAATCCGAGGCTTTCCCGCTGAACCACAGGTACAGCAACTGCGCCTACGGCGACAATGACAGCGAGTACGACGAGGACGAGGACGAGGACGAGGAGGAAGACGAGGACGAAGAGGAAGAGGCGGATGGGCTCGACGAGTGCGCGATCGACGACGAGGACGACGACGGCCTTCTCGGCATCGGGCGCGGCGAGGACGAGGCGTGCGAGTCGCTCTTCCTGCTTCCAATGAGCAAGACTAAGGAGAGCGGCGGCGGCCATGAAGCGGCTTCCGGCGTCACCTCGCCGGAGGCGCCGCCCGCGCCTCAACAGACGCGCGACGCGAATCCGGTGCTCAGCTCGGTGGAGAATCTCACCCAGTGGAAGGACGCCAAGGCCCGCGCCGCCACCGCCACCGCCGCGCCGAATGCTTCGGACAAGGAGAACAGAACGACGGCGAACTTGCTCCCCGAGCCGGCGATCCCAGCCAAGAAGAGAGAGTGGCAGGTGGTCTGCTCCGACTACAGCCCCAGCACGCCAAGCAAGCAAGAAGTCTCGGTGGACGCGAGCCTCTCGACATGGCTGGGCTCTTCGGGGACGCCGGAGAGCAACTCCGTCCGGTCCTTCTCGCCGATCAGCCGAGAAGACCGGCCGATCCTTGGGGCCCTGACCGTGGAGGACATCAAGATATCCTCTGCCAACTCGTCTCCGAGGAGGTCGAGGTCTCCGAGCCCGAGCCCTGACGACATGCCCATCCTGGGAACCGTGGGGGCTTACTGGAATTGCAGCTCCAAGGCTGGTGATCCGGTGACAAGAGGAGGGTTTATGAGGACTAGAACAAGGTTTGGGCAGAACTTTGCAGGATGAAGTGGTGAATTGCTACTGAAAGCTTCCAAGCTGGAAGCTGGAAGAGTTTGGTTTCAGGAGGAAAATTGCAGAAGATGCATACATGCTTTTGTGAGAAGAACTTACATATAGAGTCAGTGAGATTGTGGAAGTAGTGGCATGCTTTATTCAAAGATGTTGCTTGTCAAATTCTTTTATTTGTTGTAAACAATGTCCATCCATATTCTATTATGGTGATCTTTTTTTTTTTGGCGCTGTCGATATGGTGTATTGTTTCGATGTTACATTGTCAATATGGTGTATTGCACTT ] [+] EMBL C74516 [ CCTCTCCAATNCCCTCTCCCTTTCTCTCCCTCTCCCTCTTGCCTTCGCCATGGGCTGCTTCCTTGGCTGCTTCGGGGGGGCCAAGGAGCGCCGCCGCCGCCGGAAACGCTCCCCTGCGCACTCCCCCTCCGGCCGCGCCCGGGCCACGCCGCGGCTTTCCCCGAAGAAGGCTGCCGCTGCCGCCGCGTTGGATGGAGACGTTGTTTCCGCCGCCGCGCCGCTGCTGGCGACGCTCCTGGAGTTGANGGATT CACTGATGANTTGTGCTTGAACGTAATCAAGAAG AGGTGAACGTTTAAT CCAACGTAAC ] [+] EMBL AU173207 [ ACTTGCTCCCCGAGCCGGCGATCCCAGCCAAGAAGAGAGAGTGGCAGGTGGTCTGCTCCGACTACAGCCCCAGCACGCCAAGCAAGCAAGAAGTCTCGGTGGACGCGAGCCTCTCGACATGGCTGGGCTCTTCGGGGACGCCGGAGAGCAACTCCGTCCGGTCCTTCTCGCCGATCAGCCGAGAAGACCGGCCGATCCTTGGGGCCCTGACCGTGGAGGACATCAAGATATCCTCTGCCAACTCGTCTCCGAGGAGGTCGAGGTCTCCGAGCCCGAGCCCTGACGACATGCCCATCCTGGGAACCGTGGGGGCTTACTGGAATTGCAGCTCCAAGGCTGGTGATCCGGTGACAAGAGGAGGGTTTATGAGGACTAGAACAAGGTTTGGGCAGAACTTTGCAGGATGAAGTGGTGAATTGCTACTGAAAGCTTCCAAGCTG ] [+] EMBL AU094809 [ GAAGACCGGCCGATCCTTGGGGCCCTGACCGTGGAGGACNTCAAGATATCCTNTGCCAACTCGTNTCCGAGGAGGTCGAGGTNTCCGAGCCCGAGCCCTGACGACATGCCCATCCTGGGAACCNTGGGGGCTTACTGGAATTGCAGCNCCAAGGCTGGTGATCCGGTGACAAGAGGAGGGTTTATGNGGACTAGAACAAGGTTTGGGCAGAACTTTGCNGGATGAAGTGGTGAATTGCTACTGAAAGCTTCCAAGCTGGAAGCTGGAAGAGTTTGGTTTCAGGAGGAAAATTGCAGAAGATGCATACATGCTTTTGTGAGAAGAACATACATATAGAGTCAGTGAGATTGTGGAAGTAGTGGCATGCTTTATTCAAAGATGTTGCTTGTCAAATTCTTTTATTTGTTGTAAACAATGTCCATCCATATTCTATTATGGTGATNTTTTTTTTTTTGGCGCTGTCGATATGGTGTATTGTTTCGATGTTACATTGTCAATATGGTGTATTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_7622#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [ATCCTGGGAACCGTGGGGGCTTACTGGAATTGCAGCTCCAAGGCTGGTGATCCGGTGACAAGAGGAGGGTTTATGAGGACTAGAACAAGGTTTGGGCAGAACTTTGCAGGATGAAGTGGTGAATTGCTACTGAAAGCTTCCAAGCTGGAAGCTGGAANAGTTTGGTTTCAGGAGGAAAATTGCAGAAGATGCATACATGCTTTTGTGAGAAGAACATACATATAGAGTCAGTGAGATTGTGGAAGTAGTGGCATGCTTTATTCAAANATGTTGCTTGTCAAATTNTTTTATTTGTTGTAAACAATGTCCATCCATATTCTATTATGGTGATCTTTTTTTTTTTTTTTGGCGCTGTCGATATGGTGTATTGTTTCGATGTTACATTGTCAATATGGTGTATTGCACTTATGCCTTTNTNAAAAAAAAAAAAA] [+] EMBL AU173208 [ATCCTGGGAACCGTGGGGGCTTACTGGAATTGCAGCTCCAAGGCTGGTGATCCGGTGACAAGAGGAGGGTTTATGAGGACTAGAACAAGGTTTGGGCAGAACTTTGCAGGATGAAGTGGTGAATTGCTACTGAAAGCTTCCAAGCTGGAAGCTGGAANAGTTTGGTTTCAGGAGGAAAATTGCAGAAGATGCATACATGCTTTTGTGAGAAGAACATACATATAGAGTCAGTGAGATTGTGGAAGTAGTGGCATGCTTTATTCAAANATGTTGCTTGTCAAATTNTTTTATTTGTTGTAAACAATGTCCATCCATATTCTATTATGGTGATCTTTTTTTTTTTTTTTGGCGCTGTCGATATGGTGTATTGTTTCGATGTTACATTGTCAATATGGTGTATTGCACTTATGCCTTTNTNAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7622#0 GCGCCCCAAATTCCGCCTCCTCTTCTTCACTAGCTCTTCCACCCTCTCCAATCCCCTCTC 60 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 CCTTTCTCTCCCTCTCCCTCTTGCCTTCGCCATGGGCTGCTTCCTTGGCTGCTTCGGGGG 120 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 GGCCAAGGAGCGCCGCCGCCGCCGGAAACGCTCCCCTGCGCACTCCCCCTCCGGCCGCGC 180 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 CCGGGCCACGCCGCGGCTTTCCCCGAAGAAGGCTGCCGCTGCCGCCGCGTTGGATGGAGA 240 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 CGTTGTTTCCGCCGCCGCGCCGCTGCTGGCGACGCTCCTGGAGTTGAGGGATTCCACTGA 300 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 TGACTTGTGCTTGACCGTCATCAAGAAGAAGGTGGCGTTTGATCCCAACGTCACCACTTA 360 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 CGAGGCGGCTGCGATCCCGGAGGCGGAGGAGGAGGATGATGAGGAGGCCGAGCCGGCGGC 420 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 GGGTGACGACAAGGATGAGGCGAGGTGGATGCTGGCACCGGATTGCGCGAAATCCGAGGC 480 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 TTTCCCGCTGAACCACAGGTACAGCAACTGCGCCTACGGCGACAATGACAGCGAGTACGA 540 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 CGAGGACGAGGACGAGGACGAGGAGGAAGACGAGGACGAAGAGGAAGAGGCGGATGGGCT 600 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 CGACGAGTGCGCGATCGACGACGAGGACGACGACGGCCTTCTCGGCATCGGGCGCGGCGA 660 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 GGACGAGGCGTGCGAGTCGCTCTTCCTGCTTCCAATGAGCAAGACTAAGGAGAGCGGCGG 720 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 CGGCCATGAAGCGGCTTCCGGCGTCACCTCGCCGGAGGCGCCGCCCGCGCCTCAACAGAC 780 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 GCGCGACGCGAATCCGGTGCTCAGCTCGGTGGAGAATCTCACCCAGTGGAAGGACGCCAA 840 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 GGCCCGCGCCGCCACCGCCACCGCCGCGCCGAATGCTTCGGACAAGGAGAACAGAACGAC 900 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 GGCGAACTTGCTCCCCGAGCCGGCGATCCCAGCCAAGAAGAGAGAGTGGCAGGTGGTCTG 960 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 CTCCGACTACAGCCCCAGCACGCCAAGCAAGCAAGAAGTCTCGGTGGACGCGAGCCTCTC 1020 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 GACATGGCTGGGCTCTTCGGGGACGCCGGAGAGCAACTCCGTCCGGTCCTTCTCGCCGAT 1080 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 CAGCCGAGAAGACCGGCCGATCCTTGGGGCCCTGACCGTGGAGGACATCAAGATATCCTC 1140 consensus_7622#1 ------------------------------------------------------------ consensus_7622#0 TGCCAACTCGTCTCCGAGGAGGTCGAGGTCTCCGAGCCCGAGCCCTGACGACATGCCCAT 1200 consensus_7622#1 ----------------------------------------------------------AT 2 ** consensus_7622#0 CCTGGGAACCGTGGGGGCTTACTGGAATTGCAGCTCCAAGGCTGGTGATCCGGTGACAAG 1260 consensus_7622#1 CCTGGGAACCGTGGGGGCTTACTGGAATTGCAGCTCCAAGGCTGGTGATCCGGTGACAAG 62 ************************************************************ consensus_7622#0 AGGAGGGTTTATGAGGACTAGAACAAGGTTTGGGCAGAACTTTGCAGGATGAAGTGGTGA 1320 consensus_7622#1 AGGAGGGTTTATGAGGACTAGAACAAGGTTTGGGCAGAACTTTGCAGGATGAAGTGGTGA 122 ************************************************************ consensus_7622#0 ATTGCTACTGAAAGCTTCCAAGCTGGAAGCTGGAAGAGTTTGGTTTCAGGAGGAAAATTG 1380 consensus_7622#1 ATTGCTACTGAAAGCTTCCAAGCTGGAAGCTGGAANAGTTTGGTTTCAGGAGGAAAATTG 182 *********************************** ************************ consensus_7622#0 CAGAAGATGCATACATGCTTTTGTGAGAAGAACTTACATATAGAGTCAGTGAGATTGTGG 1440 consensus_7622#1 CAGAAGATGCATACATGCTTTTGTGAGAAGAACATACATATAGAGTCAGTGAGATTGTGG 242 ********************************* ************************** consensus_7622#0 AAGTAGTGGCATGCTTTATTCAAAGATGTTGCTTGTCAAATTCTTTTATTTGTTGTAAAC 1500 consensus_7622#1 AAGTAGTGGCATGCTTTATTCAAANATGTTGCTTGTCAAATTNTTTTATTTGTTGTAAAC 302 ************************ ***************** ***************** consensus_7622#0 AATGTCCATCCATATTCTATTATGGTGATCTTTTTTTTTTT----GGCGCTGTCGATATG 1556 consensus_7622#1 AATGTCCATCCATATTCTATTATGGTGATCTTTTTTTTTTTTTTTGGCGCTGTCGATATG 362 ***************************************** *************** consensus_7622#0 GTGTATTGTTTCGATGTTACATTGTCAATATGGTGTATTGCACTTAAAAAAAAAAAAAAA 1616 consensus_7622#1 GTGTATTGTTTCGATGTTACATTGTCAATATGGTGTATTGCACTTATGCCTTTNTNAAAA 422 ********************************************** **** consensus_7622#0 AAAAAAAAAAAAAAAAAA 1634 consensus_7622#1 AAAAAAAAA--------- 431 ********* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||