These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7624#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1516 fasta sequence [AATGACATCTCTTCTCATCATCTTATTCCCTTCTACTTAAATAAAAAAAGAAGAAGAAAAAACCCATCATTGCCTCCATCTTCTGGTCAAAGGATGACATCAATCCCTATCATCTCATCCCCTCCTATATAAAGAACCCAGTACTACCTTCATCTCTGACTCATAGCAATATACATACATCGTATCACAGGGAAATAATCAACATAATCAGCAACAATGGGAGCCAAGAAGCATACCTTGCAAGTGCTTCCATGGCTACTGCTCTTTGCGCAGCACACTGCAGCCAGTGCCTGCGACTGTGCTAACACCACAGACGGGGCAGACAGACAGGGTGCAATGAAGCTAAAGCTCATTGCCATTGCATCCATCCTTGCAGCTGGGGCGGCTGGTGTCTTGGTGCCAGTGATTGGCCGCTCCATGGCTGCGCTGCGCCCTGATGGTGACATCTTCTTTGCTGTCAAGGCATTTGCAGCCGGCGTCATCCTTGCCACTGGCATGGTGCACATTCTTCCAGCGGCGTTTGATGCGCTCACATCTCCATGCCTCAAAAGGGGTGGTGGGGATAGGAATCCCTTCCCCTTTGCGGGCCTTGTTTCAATGTCTGCTGCAGTGTCCACAATGGTGGTGGACTCATTGGCTGCTGGATACTATCACCGGTCTCAATTCAGGAAGGCACGCCCAGTTGACAACATCAACGTACACAAGCATGCTGGAGACGAGAGGGCTGAACATGCACAACACATAAATGCGCACACACATGGAGGACATACACATTCACATGGTGATATAGTGGTCTGTGGCTCACCAGAGGAGGGTTCAGTAGCTGAATCAATTCGACATAAGGTAGTATCTCAGGTTCTTGAGCTGGGAATCTTGGTGCATTCAGTTATCATTGGAGTATCCTTAGGTGCATCTGTGAGGCCATCTACTATCAGGCCACTAGTTGGTGCCCTCAGCTTCCACCAGTTCTTTGAAGGTGTAGGTTTGGGTGGTTGCATTGTTCAGGCTAATTTTAAGGTAAGGGCAACCGTCATTATGGCAATATTTTTCTCCCTGACTGCACCTGTGGGCATCGTGCTAGGAATTGCAATTTCATCGAGCTACAATGTGCATAGCTCAACTGCCTTCGTCGTTGAAGGAGTCTTCAACTCAGCCTCAGCAGGAATTTTGATCTACATGTCCCTAGTTGACCTTCTAGCAACAGATTTCAATAACCCGAAGCTACAGATTAATACAAAGCTTCAGCTCATGGCATACCTTGCACTTTTCCTAGGTGCTGGACTGATGTCAATGCTTGCCATATGGGCATAGATCTTCAGAATAACAGAGGATCTTATTTCCCAGATAGGCTTGATTTGTATTAATCTATGAGTTTTCTATCTTCGCAAAATAACATACTCTTGGTGGAGTATTTATTGTATCCATCCTAGATTTTCTAAAACCAAAGCTTATCTCAGGTGATCTCTTTGTACTTTATGATATGATAATACATGATGACTTAACTTGTTCTTAAAAA] [+] EMBL AK069804 [AATGACATCTCTTCTCATCATCTTATTCCCTTCTACTTAAATAAAAAAAGAAGAAGAAAAAACCCATCATTGCCTCCATCTTCTGGTCAAAGGATGACATCAATCCCTATCATCTCATCCCCTCCTATATAAAGAACCCAGTACTACCTTCATCTCTGACTCATAGCAATATACATACATCGTATCACAGGGAAATAATCAACATAATCAGCAACAATGGGAGCCAAGAAGCATACCTTGCAAGTGCTTCCATGGCTACTGCTCTTTGCGCAGCACACTGCAGCCAGTGCCTGCGACTGTGCTAACACCACAGACGGGGCAGACAGACAGGGTGCAATGAAGCTAAAGCTCATTGCCATTGCATCCATCCTTGCAGCTGGGGCGGCTGGTGTCTTGGTGCCAGTGATTGGCCGCTCCATGGCTGCGCTGCGCCCTGATGGTGACATCTTCTTTGCTGTCAAGGCATTTGCAGCCGGCGTCATCCTTGCCACTGGCATGGTGCACATTCTTCCAGCGGCGTTTGATGCGCTCACATCTCCATGCCTCAAAAGGGGTGGTGGGGATAGGAATCCCTTCCCCTTTGCGGGCCTTGTTTCAATGTCTGCTGCAGTGTCCACAATGGTGGTGGACTCATTGGCTGCTGGATACTATCACCGGTCTCAATTCAGGAAGGCACGCCCAGTTGACAACATCAACGTACACAAGCATGCTGGAGACGAGAGGGCTGAACATGCACAACACATAAATGCGCACACACATGGAGGACATACACATTCACATGGTGATATAGTGGTCTGTGGCTCACCAGAGGAGGGTTCAGTAGCTGAATCAATTCGACATAAGGTAGTATCTCAGGTTCTTGAGCTGGGAATCTTGGTGCATTCAGTTATCATTGGAGTATCCTTAGGTGCATCTGTGAGGCCATCTACTATCAGGCCACTAGTTGGTGCCCTCAGCTTCCACCAGTTCTTTGAAGGTGTAGGTTTGGGTGGTTGCATTGTTCAGGCTAATTTTAAGGTAAGGGCAACCGTCATTATGGCAATATTTTTCTCCCTGACTGCACCTGTGGGCATCGTGCTAGGAATTGCAATTTCATCGAGCTACAATGTGCATAGCTCAACTGCCTTCGTCGTTGAAGGAGTCTTCAACTCAGCCTCAGCAGGAATTTTGATCTACATGTCCCTAGTTGACCTTCTAGCAACAGATTTCAATAACCCGAAGCTACAGATTAATACAAAGCTTCAGCTCATGGCATACCTTGCACTTTTCCTAGGTGCTGGACTGATGTCAATGCTTGCCATATGGGCATAGATCTTCAGAATAACAGAGGATCTTATTTCCCAGATAGGCTTGATTTGTATTAATCTATGAGTTTTCTATCTTCGCAAAATAACATACTCTTGGTGGAGTATTTATTGTATCCATCCTAGATTTTCTAAAACCAAAGCTTATCTCAGGTGATCTCTTTGTACTTTATGATATGATAATACATGATGACTTA ] [+] EMBL AY323915 [ cgACATCGTATCACAGGGAAATAATCAACATAATCAGCAACAATGGGAGCCAAGAAGCATACCTTGCAAGTGCTTCCATGGCTACTGCTCTTTGCGCAGCACACTGCAGCCAGTGCCTGCGACTGTGCTAACACCACAGACGGGGCAGACAGACAGGGTGCAATGAAGCTAAAGCTCATTGCCATTGCATCCATCCTTGCAGCTGGGGCGGCTGGTGTCTTGGTGCCAGTGATTGGCCGCTCCATGGCTGCGCTGCGCCCTGATGGTGACATCTTCTTTGCTGTCAAGGCATTTGCAGCCGGCGTCATCCTTGCCACTGGCATGGTGCACATTCTTCCAGCGGCGTTTGATGCGCTCACATCTCCATGCCTCAAAAGGGGTGGTGGGGATAGGAATCCCTTCCCCTTTGCGGGCCTTGTTTCAATGTCTGCTGCAGTGTCCACAATGGTGGTGGACTCATTGGCTGCTGGATACTATCACCGGTCTCAATTCAGGAAGGCACGCCCAGTTGACAACATCAACGTACACAAGCATGCTGGAGACGAGAGGGCTGAACATGCACAACACATAAATGCGCACACACATGGAGGACATACACATTCACATGGTGATATAGTGGTCTGTGGCTCACCAGAGGAGGGTTCAGTAGCTGAATCAATTCGACATAAGGTAGTATCTCAGGTTCTTGAGCTGGGAATCTTGGTGCATTCAGTTATCATTGGAGTATCCTTAGGTGCATCTGTGAGGCCATCTACTATCAGGCCACTAGTTGGTGCCCTCAGCTTCCACCAGTTCTTTGAAGGTGTAGGTTTGGGTGGTTGCATTGTTCAGGCTAATTTTAAGGTAAGGGCAACCGTCATTATGGCAATATTTTTCTCCCTGACTGCACCTGTGGGCATCGTGCTAGGAATTGCAATTTCATCGAGCTACAATGTGCATAGCTCAACTGCCTTCGTCGTTGAAGGAGTCTTCAACTCAGCCTCAGCAGGAATTTTGATCTACATGTCCCTAGTTGACCTTCTAGCAACAGATTTCAATAACCCGAAGCTACAGATTAATACAAAGCTTCAGCTCATGGCATACCTTGCACTTTTCCTAGGTGCTGGACTGATGTCAATGCTTGCCATATGGGCATAGATCTTCAGAATAACAGAGGATCTTATTTCCCAGATAGGCTTGATTTGTATTAATCTATGAGTTTTCTATCTTCGCAAAATAACATACTCTTGGTGGAGTATTTATTGTATCCATCCTAGATTTTCTAAAACCAAAGCTTATCTCAGGTGATCTCTTTGTACTTTATGATATGATAATACATGATGACTTAACTTGTTCTTAAAAA] [+] EMBL AU030756 [ CANANGGNAATAATCAACATAATCAGCAACAATGGGAGNCAAGAAGCATACCTTGCAANTGCTTCCATGGCTACTGCTCTTTGCGCA NACACTGCAGCCAGTGCCTGCGACTGTGCTAACACCACAGACGGGGCAGACAGACAGGGTGCAATGAAGCTAAAGCTCATTGCCATTGCATCCATCCTTGCAGCTGGGGCGGCTGGTGTCTTGGTGCCAGTGATTGGCCGCTCCATGGCTGCGCTGCGCCCTGATGGTGACATCTTCTTTGCTGTCAAGGCATTTGCAGCCGGCGTCATCCTTGCCACTGGCATGGTGCACATTCTTCCAGCGGCGTTTGATGCGCTCACATC ] [+] EMBL AU030757 [ GGTGCATCTGTGAGGCCATCTACTATCAGGCCACTAGTTGGTGCCCTCAGCTTCCACCAGTTCTTTGAAGGTGTAGGTTTGGGTGGTTGCATTGTTCAGGCTAATTTTAAGGTAAGGGCAACCGTCATTATGGCAATATTTTTCTCCCTGACTGCACCTGTGGGCATCGTGCTAGGAATTGCAATTTCATCGAGCTACAATGTGCATAGCTCAACTGCCTTCGTCGTTGAAGGAGTCTTCAACTCAGCCTCAGCAGGAATTTTGATCTACATGTCCCTAGTTGACCTTCTAGCAACAGATTTCAATAACCCGAAGCTACAGATTAATACAAAGCTTCAGCTCATGGCATACCTTGCACTTTTCCTAGGTGCTGGACTGATGTCAATGCTTGCCATATGGGCATAGATCTTCAGAATAACAGAGGATCTTATTTCCCAGATAGGCTTGATTTGTATTAATCTATGAGTTTTCTATCTTCGCAAAATAACATACTCTTGGTGGAGTATTTATTGTATCCATCCTAGATTTTCTAAAACCAAAGCTTATCTCAGGTGATCTCTTTGTACTTTATGATATGATAATACATGATGACTTAACTTGTTCTTAAAA ] consensusID : consensus_7624#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [ACGAGACAAGGGGATGAGAAGTTACCTATTCAATGGATATGTCTGATAATCTGCACTTCAGGGGAACTTTTCCCACTAAACTCAGAATTAACTCCATTTCATTGATTGCCAACTAAATAAATGCTTCAGAAAACCAGATAGGCCCTCTTGCAATAACCACATGAATTTTTGGCCATGCAGGTTCTTGAGCTGGGAATCTTGGTGCATTCAGTTATCATTGGAGTATCCTTAGGTGCATCTGTGAGGCCATCTACTATCAGGCCACTAGTTGGTGCCCTCAGCTTCCACCAGTTCTTTGAAGGTGTAGGTTTGGGTGGTTGCATTGTTCAGGTATGTCCAAGTACTGTAACCTAGATAGTAGACACCTGATGATAAATATCTAACTTGTTGTTTCGACTTTTGACAAAAGATAGCAAAATGCTTGCTCAAAAAGGCTTAACATCAACATGCTCATACGCCAGTGGAAGGGCCCTTCCGCAGAAGGGGAGAGAAAAAAAGAAATAAGGCAAAGACATACAAAGTTGGAAAATAAAAGGCACAATAGCAACGAGACACATTGCAAGCATGAAAAGTTATTAGCCATTTTCTTCAAGAAACAAAGTA] [+] EMBL CA764428 [ACGAGACAAGGGGATGAGAAGTTACCTATTCAATGGATATGTCTGATAATCTGCACTTCAGGGGAACTTTTCCCACTAAACTCAGAATTAACTCCATTTCATTGATTGCCAACTAAATAAATGCTTCAGAAAACCAGATAGGCCCTCTTGCAATAACCACATGAATTTTTGGCCATGCAGGTTCTTGAGCTGGGAATCTTGGTGCATTCAGTTATCATTGGAGTATCCTTAGGTGCATCTGTGAGGCCATCTACTATCAGGCCACTAGTTGGTGCCCTCAGCTTCCACCAGTTCTTTGAAGGTGTAGGTTTGGGTGGTTGCATTGTTCAGGTATGTCCAAGTACTGTAACCTAGATAGTAGACACCTGATGATAAATATCTAACTTGTTGTTTCGACTTTTGACAAAAGATAGCAAAATGCTTGCTCAAAAAGGCTTAACATCAACATGCTCATACGCCAGTGGAAGGGCCCTTCCGCAGAAGGGGAGAGAAAAAAAGAAATAAGGCAAAGACATACAAAGTTGGAAAATAAAAGGCACAATAGCAACGAGACACATTGCAAGCATGAAAAGTTATTAGCCATTTTCTTCAAGAAACAAAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7624#0 AATGACATCTCTTCTCATCATCTTATTCCCTTCTACTTAAATAAAAAAAGAAGAAGAAAA 60 consensus_7624#1 ------------------------------------------------------------ consensus_7624#0 AACCCATCATTGCCTCCATCTTCTGGTCAAAGGATGACATCAATCCCTATCATCTCATCC 120 consensus_7624#1 ------------------------------------------------------------ consensus_7624#0 CCTCCTATATAAAGAACCCAGTACTACCTTCATCTCTGACTCATAGCAATATACATACAT 180 consensus_7624#1 ------------------------------------------------------------ consensus_7624#0 CGTATCACAGGGAAATAATCAACATAATCAGCAACAATGGGAGCCAAGAAGCATACCTTG 240 consensus_7624#1 ------------------------------------------------------------ consensus_7624#0 CAAGTGCTTCCATGGCTACTGCTCTTTGCGCAGCACACTGCAGCCAGTGCCTGCGACTGT 300 consensus_7624#1 ------------------------------------------------------------ consensus_7624#0 GCTAACACCACAGACGGGGCAGACAGACAGGGTGCAATGAAGCTAAAGCTCATTGCCATT 360 consensus_7624#1 ------------------------------------------------------------ consensus_7624#0 GCATCCATCCTTGCAGCTGGGGCGGCTGGTGTCTTGGTGCCAGTGATTGGCCGCTCCATG 420 consensus_7624#1 ------------------------------------------------------------ consensus_7624#0 GCTGCGCTGCGCCCTGATGGTGACATCTTCTTTGCTGTCAAGGCATTTGCAGCCGGCGTC 480 consensus_7624#1 ------------------------------------------------------------ consensus_7624#0 ATCCTTGCCACTGGCATGGTGCACATTCTTCCAGCGGCGTTTGATGCGCTCACATCTCCA 540 consensus_7624#1 ------------------------------------------------------------ consensus_7624#0 TGCCTCAAAAGGGGTGGTGGGGATAGGAATCCCTTCCCCTTTGCGGGCCTTGTTTCAATG 600 consensus_7624#1 ------------------------------------------------------------ consensus_7624#0 TCTGCTGCAGTGTCCACAATGGTGGTGGACTCATTGGCTGCTGGATACTATCACCGGTCT 660 consensus_7624#1 ------------------------------------------------------------ consensus_7624#0 CAATTCAGGAAGGCACGCCCAGTTGACAACATCAACGTACACAAGC-ATGCTGGAGACGA 719 consensus_7624#1 -ACGAGACAAGGGGATGAGAAGTTACCTAT-TCAATGGATATGTCTGATAATCTGCACTT 58 * * * ** * * **** * * **** * * * ** * ** consensus_7624#0 GAGGGCTGAACATGCACAACACATAAATGCGCACACACATGGAGGACATACACATTCACA 779 consensus_7624#1 CAGGG--GAACTTTTCCCAC---TAAACTCAGAATTAACTCCATTTCATTGATTGCCAAC 113 **** **** * * ** **** * * * * * *** * ** consensus_7624#0 TGGTGATATAGTGGTCTGTGGCTCACCAGAGGAGGGTTCAGTAGCTGAATCAATTCGACA 839 consensus_7624#1 TAAATAAATG-----CTTCAGAAAACCAGAT-AGGCCCTCTTGCAATAACCACATGAATT 167 * * ** ** * ****** *** * ** ** * * consensus_7624#0 TAAGGTAGTATCTCAGGTTCTTGAGCTGGGAATCTTGGTGCATTCAGTTATCATTGGAGT 899 consensus_7624#1 TTTGGCCATG---CAGGTTCTTGAGCTGGGAATCTTGGTGCATTCAGTTATCATTGGAGT 224 * ** * *********************************************** consensus_7624#0 ATCCTTAGGTGCATCTGTGAGGCCATCTACTATCAGGCCACTAGTTGGTGCCCTCAGCTT 959 consensus_7624#1 ATCCTTAGGTGCATCTGTGAGGCCATCTACTATCAGGCCACTAGTTGGTGCCCTCAGCTT 284 ************************************************************ consensus_7624#0 CCACCAGTTCTTTGAAGGTGTAGGTTTGGGTGGTTGCATTGTTCAGGCTAATTTTAAGGT 1019 consensus_7624#1 CCACCAGTTCTTTGAAGGTGTAGGTTTGGGTGGTTGCATTGTTCAGGT--ATGTCCAAGT 342 *********************************************** ** * * ** consensus_7624#0 AAGGGCAACCGTCATTATGGCAATATTTTTCTCCCTGACTGCACCTGTGGGCATCGTGCT 1079 consensus_7624#1 A-------CTGTAACCTAGATAGTAG--------------ACACCTGATGATAAATATCT 381 * * ** * * * ** ****** * * ** consensus_7624#0 AGGAATTGCAATTTCATCGAGCTACAATGTGCATAGCTCAACTGCCTTCGTCGTTGAAGG 1139 consensus_7624#1 A--ACTTGTTGTTTCGACTTTTGACAAAA--GATAGCA-AAATGCTT-----GCTCAAAA 431 * * *** **** * **** ***** ** *** * * * ** consensus_7624#0 AGTCTTCAACTCAGCCTCAGCAGGAATTTTGATCTACATGTCCCTAGTTGACCTTCTAGC 1199 consensus_7624#1 AGGCTTAACATCAACAT--GCTCATACGCCAGTGGAAGGGCCCTTCCGCAGAAGGGGAGA 489 ** *** * *** * * ** * * * * ** * ** consensus_7624#0 AACAGATTTCAATAACCCGAAGCTACAGATTAATACAAAGCTTCAGCTCATGGCATACCT 1259 consensus_7624#1 GAAAAAAAGAAATAAGGCAAAGACATACAA-AGTTGGAAAATAAAAGGCACAATAGCAAC 548 * * * ***** * *** * * * * * ** * * ** * consensus_7624#0 TGCACTTTTCCTAGGTGCTGGACTGATGTCAATGCTTGCCATATGGGCATAGATCTTCAG 1319 consensus_7624#1 GAGACACATTGCAAGCA-TGAAAAGTTATTAGCCATTTTCTTCAAGAAACAAAGTA---- 603 ** * * * ** * * * * * ** * * * * * * consensus_7624#0 AATAACAGAGGATCTTATTTCCCAGATAGGCTTGATTTGTATTAATCTATGAGTTTTCTA 1379 consensus_7624#1 ------------------------------------------------------------ consensus_7624#0 TCTTCGCAAAATAACATACTCTTGGTGGAGTATTTATTGTATCCATCCTAGATTTTCTAA 1439 consensus_7624#1 ------------------------------------------------------------ consensus_7624#0 AACCAAAGCTTATCTCAGGTGATCTCTTTGTACTTTATGATATGATAATACATGATGACT 1499 consensus_7624#1 ------------------------------------------------------------ consensus_7624#0 TAACTTGTTCTTAAAAA 1516 consensus_7624#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||