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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 955 fasta sequence
[CGCCGCCGTCGGAGAGGCGCTCCGCCGCGGCGCTTCGACGGCGCCGTGGAGGCGGGCGGCCTCGGCGTCGTACCACCACACGATCCAGGCGTTGCCGCGGGAGACGGCCGGCCCGCGCGCGGCGGCGCGGGAGCGCCGCAGCGGCCGCGTCCCGGCCGTGCTACTCGCCCTCGCCGGCGCCGGCCCCGGGGAGGGGGTGGCCCACCGGAAGCTCCTCACCGCCGACAGGAAGCAGCTCGGGGAGATTCTGAAGCAGTCCCCCTACTTCCTCTCCACCCCCGTCCGCCTCCAGGTCCGCGCCGGCGAGCGATCCACCGCCGTCGTGCACTCCGGCACTGTCCTCCCTATCAAGGTGCATAGAGACGAAACAACAGGAAATATATTGAACTTGGTGCTGGTGGAGGCAGATGAAGGAACAATGCTGAAGGTGAACTTGCCTGTAGAGTTCAAGGGGGAGGACGTCTGCCCTGGGTTGAAGAAAGAAAATAAGGACCAGCTTGGTGTATCTCTGCCCTGCTGAGCACATCCCTCCAAAAATTGAGGTGGACCTGGCAAATCTTGGCATTGGAGATAGGGTATCAATGAATGACATCCCCGTCCATCCGTCGTTGAGGTTACTGAGTAAAAACGAGACCATGCCTGTC-TGCAAGATCTTGGCCTCGAAA-CCAGTTGAGTAGAGGAATCCA-TGC-AAATTTTTGGAGCTTGGTGACAATGTACCCGAGTTGGTACAGCAGCCCAGTAACTTCATCTCCCTATGTGCTTGCATTTGGTAGCTGTTTGCCAAGTCCCAATGTGGTAATAGGTTCAAACAAGTTATCATGTTCAGGACCAATCTTGGCTGTAATGTCACAAAATAACACCAGCTTTCTCAGTTTAACATACACAAGACATTTTGTCGATTCTTGGTTGTGGCCTGGGTGTATTGACACGCCGAGCTGATAATGTCGAANTTTNA]
[+] EMBL AK071403 [CGCCGCCGTCGGAGAGGCGCTCCGCCGCGGCGCTTCGACGGCGCCGTGGAGGCGGGCGGCCTCGGCGTCGTACCACCACACGATCCAGGCGTTGCCGCGGGAGACGGCCGGCCCGCGCGCGGCGGCGCGGGAGCGCCGCAGCGGCCGCGTCCCGGCCGTGCTACTCGCCCTCGCCGGCGCCGGCCCCGGGGAGGGGGTGGCCCACCGGAAGCTCCTCACCGCCGACAGGAAGCAGCTCGGGGAGATTCTGAAGCAGTCCCCCTACTTCCTCTCCACCCCCGTCCGCCTCCAGGTCCGCGCCGGCGAGCGATCCACCGCCGTCGTGCACTCCGGCACTGTCCTCCCTATCAAGGTGCATAGAGACGAAACAACAGGAAATATATTGAACTTGGTGCTGGTGGAGGCAGATGAAGGAACAATGCTGAAGGTGAACTTGCCTGTAGAGTTCAAGGGGGAGGACGTCTGCCCTGGGTTGAAGAAAGAAAATAAGGACCAGCTTGGTGTATCTCTGCCCTGCTGAGCACATCCCTCCAAAAATTGAGGTGGACCTGGCAAATCTTGGCATTGGAGATAGGGTATCAATGAATGACATCCCCGTCCATCCGTCGTTGAGGTTACTGAGTAAAAACGAGACCATGCCTGTC TGCAAGATCTTGGCCTCGAAA CCAGTTGAGTAGAGGAATCCA TGC AAATTTTTGGAGCTTGGTGACAATGTACCCGAGTTGGTACAGCAGCCCAGTAACTTCATCTCCCTATGTGCTTGCATTTGGTAGCTGTTTGCCAAGTCCCAATGTGGTAATAGGTTCAAACAAGTTATCATGTTCAGGACCAATCTTGGCTGTAATGTCACAAAATAACACCAGCTTTCTCAGTTTAACATACACAAGA ]
[+] EMBL C97112 [ AACCGAGACCATNCCTGTCTTGAAAGATCTTGGCCCCGAAACCCAGTTAANTAGAGGAATCCATTGCAAAATTTTTGGAGCTTGGTGACAATGTACCCGAGTTGNTACAGCANCCCAGTAACTTCATCTCCCTATGTGCTTGCATTTGGTAGCTGTTTGCCAAGTCCCAATGTGGTAATAGGNTCAAACAAGTTATCATGTTCAGGACCAATCTTGGCTGTAATGTNANNAAATAACACCAGCTTTCTCAGTTTAACATACACAAGACATTTTGTCGATTCTTGGTTGTGGCCTGGGTGTATTGACACGCCGAGCTGATAATGTCGAANTTTNA]
consensusID : consensus_7625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 676 fasta sequence
[GTGCTACTCGCCCTCNCCGG-CGCCGGCCCCGGGGAGGGGGTGGCCCACCGGAAGCTCCTCACCGCCGACAGGAAGCAGCTCGGGGAGATTCTGAAGCAGTCCCCCTACTTCCTCTCCACCCCCGTCCGCCTCCAGNTCCGCGCCGGCGAGCGATCCACCGCCGTCGTNCACNCCGGCACTGTCCTCCCTATCAAGGTGCATAGAGACGAAACAACAGGAAATATATTGAACTTGGTGCTGGTGGAGGCAGATGAAGGAACAATGCTGAAGGTGAACTTGCCTGTAGAGTTCAAGGGGGAGGACGTCTGCCCTGGGTTGAAGAAAGGCGGCTTTTTGCAGAAAATAAGGACCAGCTTGGTGTATCTCTGCCCTGCTGAGCACATCCCTCCAAAAATTGAGGTGGACCTGGCAAATCTTGACATTGGAGATAGGGTATCAATGAATGACATCCCCGTCCATCCGTCGTTGAGGTTACTGAGTAAAAACGAGACCATGCCTGTCTGCAAGATCTTGGCCTCGAAACCAGTTGAGTAGAGGAATCCATGCAAATTTTTGGAGCTTGGTGACAATGTACCCGAGTTGGTACAGCAGCCCAGTAACTTCATCTCCCTATGTGCTTGCATTTGGTAGCTGTTTGCCAAGTCCCAATGTGGTAATAGGGTCAAACAAGTTATCA]
[+] EMBL AU160871 [GTGCTACTCGCCCTCNCCGG CGCCGGCCCCGGGGAGGGGGTGGCCCACCGGAAGCTCCTCACCGCCGACAGGAAGCAGCTCGGGGAGATTCTGAAGCAGTCCCCCTACTTCCTCTCCACCCCCGTCCGCCTCCAGNTCCGCGCCGGCGAGCGATCCACCGCCGTCGTNCACNCCGGCACTGTCCTCCCTATCAAGGTGCATAGAGACGAAACAACAGGAAATATATTGAACTTGGTGCTGGTGGAGGCAGATGAAGGAACAATGCTGAAGGTGAACTTGCCTGTAGAGTTCAAGGGGGAGGACGTCTGCCCTGGGTTGAAGAAAGGCGGCTTTTTGCAGAAAATAAGGACCAGCTTGGTGTATCTCTGCCCTGCTGAGCACATCCCTCCAAAAATTGAGGTGGACCTGGCAAATCTTGACATTGGAGATAGGGTATCAATGAATGACATCCCCGTCCATCCGTCGTTGAGGTTACTGAGTAAAAACGAGACCATGCCTGTCTGCAAGATCTTGGCCTCGAAACCAGTTGAGTAGAGGAATCCATG ]
[+] EMBL BI305547 [ CGGACGCCGGCCCCGGGGAGGGGGTGGCCCACCGGAAGCTCCTCACCGCCGACAGGAAGCAGCTCGGGGAGATTCTGAAGCAGTCCCCCTACTTCCTCTCCACCCCCGTCCGCCTCCAGGTCCGCGCCGGCGAGCGATCCACCGCCGTCGTGCACTCCGGCACTGTCCTCCCTATCAAGGTGCATAGAGACGAAACAACAGGAAATATATTGAACTTGGTGCTGGTGGAGGCAGATGAAGGAACAATGCTGAAGGTGAACTTGCCTGTAGAGTTCAAGGGGGAGGACGTCTGCCCTGGGTTGAAGAAAGGCGGCTTTTTGCAGAAAATAAGGACCAGCTTGGTGTATCTCTGCCCTGCTGAGCACATCCCTCCAAAAATTGAGGTGGACCTGGCAAATCTTGACATTGGAGATAGGGTATCAATGAATGACATCCCCGTCCATCCGTCATTGAAGTTACTGAGTAAAAACGAGACCATGCCTGTCTGCAAGATCTTGGCCTCGAAACCAGTTGAGTAGAGGAATCCATGCAAATTTTTGGAGCTTGGTGACAATGTACCCGAGTTGGTACAGCAGCCCAGTAACTTCATCTCCCTATGTGCTTGCATTTGGTAGCTGTTTGCCAAGTCCCAATGTGGTAATAGGGTCAAACAAGTTATCA]
consensusID : consensus_7625#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence
[CGCTTTGCCTCCGCCGCGCCGCCGCCGCCGCCGTCGGAGAGGCGCTCCGCCGCGGCGCTTCGACGGCGCCGTGGAGGCGGGCGGCCTCGGCGTCGTACCACCACACGATCCAGGCGTTGCCGCGGGAGACGGCCGGTCCGCGCGCGGGGGAGCGGGAGCGCCGGAGTGGTCGAGTCCCGGTCGTGCTACTCGCCCTCGCCGGCGCCGGTCGCGGTGAGGGTTAGGACCACCGTAACTCCTCACCGCCGAGCCCGAAGAGCTGGGGGGCATTCTGCAGGAGTTCGCGTGCTTCTCCTCCACTGACGTACGGCTTCAGGCTCGCGCTGGAGAGCAGTCCCCCGCTGTCGCGCACTCTGGTTTTGCCCACCCTATCTACGTGCGTGGAGCGCTACCGCCACCGAATTGGGTGACCTTGGTGCTGTTGAAGGGCTAGGACGTGACATGCTTCCCCGTACTTCGCTGTGGAGTTCAGGACCAGTTCGCCCCTCATGGGCTTACAAACGGCGGCCTTTTCTGGACGGATAAGTGCAACCTGCTGTTTGTCAGCCCCCTTGGGTTCATCCCTTTAAATGGTTTCGGAGCACCTCGTCACTTT]
[+] EMBL CA754199 [CGCTTTGCCTCCGCCGCGCCGCCGCCGCCGCCGTCGGAGAGGCGCTCCGCCGCGGCGCTTCGACGGCGCCGTGGAGGCGGGCGGCCTCGGCGTCGTACCACCACACGATCCAGGCGTTGCCGCGGGAGACGGCCGGTCCGCGCGCGGGGGAGCGGGAGCGCCGGAGTGGTCGAGTCCCGGTCGTGCTACTCGCCCTCGCCGGCGCCGGTCGCGGTGAGGGTTAGGACCACCGTAACTCCTCACCGCCGAGCCCGAAGAGCTGGGGGGCATTCTGCAGGAGTTCGCGTGCTTCTCCTCCACTGACGTACGGCTTCAGGCTCGCGCTGGAGAGCAGTCCCCCGCTGTCGCGCACTCTGGTTTTGCCCACCCTATCTACGTGCGTGGAGCGCTACCGCCACCGAATTGGGTGACCTTGGTGCTGTTGAAGGGCTAGGACGTGACATGCTTCCCCGTACTTCGCTGTGGAGTTCAGGACCAGTTCGCCCCTCATGGGCTTACAAACGGCGGCCTTTTCTGGACGGATAAGTGCAACCTGCTGTTTGTCAGCCCCCTTGGGTTCATCCCTTTAAATGGTTTCGGAGCACCTCGTCACTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7625#0 -------------------------CGCCGCCGTCGGAGAGGCGCTCCGCCGCGGCGCTT 35
consensus_7625#1 ------------------------------------------------------------
consensus_7625#2 CGCTTTGCCTCCGCCGCGCCGCCGCCGCCGCCGTCGGAGAGGCGCTCCGCCGCGGCGCTT 60
consensus_7625#0 CGACGGCGCCGTGGAGGCGGGCGGCCTCGGCGTCGTACCACCACACGATCCAGGCGTTGC 95
consensus_7625#1 ------------------------------------------------------------
consensus_7625#2 CGACGGCGCCGTGGAGGCGGGCGGCCTCGGCGTCGTACCACCACACGATCCAGGCGTTGC 120
consensus_7625#0 CGCGGGAGACGGCCGGCCCGCGCGCGGCGGCGCGGGAGCGCCGCAGCGGCCGCGTCCCGG 155
consensus_7625#1 ------------------------------------------------------------
consensus_7625#2 CGCGGGAGACGGCCGGTCCGCGCGCGGGGGAGCGGGAGCGCCGGAGTGGTCGAGTCCCGG 180
consensus_7625#0 CCGTGCTACTCGCCCTCGCCGGCGCCGGCCCCGGGGAGGGGGTGGCCCACCGGAAGCTCC 215
consensus_7625#1 --GTGCTACTCGCCCTCNCCGGCGCCGGCCCCGGGGAGGGGGTGGCCCACCGGAAGCTCC 58
consensus_7625#2 TCGTGCTACTCGCCCTCGCCGGCGCCGGTCGCGGTGAGGGTTAGGACCACCGTAA-CTCC 239
*************** ********** * *** ***** ** ****** ** ****
consensus_7625#0 TCACCGCCGACAGGAAGCAGCTCGGGGAGATTCTGAAGCAGTCCCCCTACTTCCTCTCCA 275
consensus_7625#1 TCACCGCCGACAGGAAGCAGCTCGGGGAGATTCTGAAGCAGTCCCCCTACTTCCTCTCCA 118
consensus_7625#2 TCACCGCCGAGCCCGAAGAGCTGGGGGGCATTCTGCAGGAGTTCGCGTGCTTCTCCTCCA 299
********** * **** **** ****** ** *** * * * **** *****
consensus_7625#0 CCCCCGTCCGCCTCCAGGTCCGCGCCGGCGAGCGATCCACCGCCGTCGTGCACTCCGGCA 335
consensus_7625#1 CCCCCGTCCGCCTCCAGNTCCGCGCCGGCGAGCGATCCACCGCCGTCGTNCACNCCGGCA 178
consensus_7625#2 CTGACGTACGGCTTCAGGCTCGCGCTGGAGAGCAGTCCCCCGCTGTCGCGCACTCTGGTT 359
* *** ** ** *** ***** ** **** *** **** **** *** * **
consensus_7625#0 CTGTCCTCCCTATCAAGGTGCATAGAGACGAAACAACAGGAAATATATTGAACTTGGTGC 395
consensus_7625#1 CTGTCCTCCCTATCAAGGTGCATAGAGACGAAACAACAGGAAATATATTGAACTTGGTGC 238
consensus_7625#2 TTGCCCACCCTATCTACGTGCGTGGAGCGCTACCGCCACCGAATTGGGTGACCTTGGTGC 419
** ** ******* * **** * *** * * ** *** *** ********
consensus_7625#0 TGGTGGAGGCAGATGAAGGAACAATGCTGAAGGTGAACTTGCCTGTAGAGTTCAAGGGGG 455
consensus_7625#1 TGGTGGAGGCAGATGAAGGAACAATGCTGAAGGTGAACTTGCCTGTAGAGTTCAAGGGGG 298
consensus_7625#2 TGTTGAAGGGCTAGGACGTGACA-TGCTTCCC-CGTACTTCGCTGTGGAGTTCA-GGACC 476
** ** *** * ** * *** **** * **** **** ******* **
consensus_7625#0 AGGACGTCTGCCCTGGGTTGAAGAAAG--------------AAAATAAGGACCAGCTTGG 501
consensus_7625#1 AGGACGTCTGCCCTGGGTTGAAGAAAGGCGGCTTTTTGCAGAAAATAAGGACCAGCTTGG 358
consensus_7625#2 AGTTCGCCCCTCATGGGCTTACAAACGGCGGCCTTTTCTGGACGGATAAGTGCAACCTGC 536
** ** * * **** * * ** * * * * ** * **
consensus_7625#0 TGTATCTCTGCCCTGCTGAGCACATCCCTCCAAA-AATTGAGGTGGACCTGGCAAATCTT 560
consensus_7625#1 TGTATCTCTGCCCTGCTGAGCACATCCCTCCAAA-AATTGAGGTGGACCTGGCAAATCTT 417
consensus_7625#2 TGTTTGTCAGCCCCCTTGGGTTCATCCCTTTAAATGGTTTCGGAGCACCTCGTCACTTT- 595
*** * ** **** ** * ******* *** ** ** * **** * * * *
consensus_7625#0 GGCATTGGAGATAGGGTATCAATGAATGACATCCCCGTCCATCCGTCGTTGAGGTTACTG 620
consensus_7625#1 GACATTGGAGATAGGGTATCAATGAATGACATCCCCGTCCATCCGTCGTTGAGGTTACTG 477
consensus_7625#2 ------------------------------------------------------------
consensus_7625#0 AGTAAAAACGAGACCATGCCTGTCTGCAAGATCTTGGCCTCGAAACCAGTTGAGTAGAGG 680
consensus_7625#1 AGTAAAAACGAGACCATGCCTGTCTGCAAGATCTTGGCCTCGAAACCAGTTGAGTAGAGG 537
consensus_7625#2 ------------------------------------------------------------
consensus_7625#0 AATCCATGCAAATTTTTGGAGCTTGGTGACAATGTACCCGAGTTGGTACAGCAGCCCAGT 740
consensus_7625#1 AATCCATGCAAATTTTTGGAGCTTGGTGACAATGTACCCGAGTTGGTACAGCAGCCCAGT 597
consensus_7625#2 ------------------------------------------------------------
consensus_7625#0 AACTTCATCTCCCTATGTGCTTGCATTTGGTAGCTGTTTGCCAAGTCCCAATGTGGTAAT 800
consensus_7625#1 AACTTCATCTCCCTATGTGCTTGCATTTGGTAGCTGTTTGCCAAGTCCCAATGTGGTAAT 657
consensus_7625#2 ------------------------------------------------------------
consensus_7625#0 AGGTTCAAACAAGTTATCATGTTCAGGACCAATCTTGGCTGTAATGTCACAAAATAACAC 860
consensus_7625#1 AGGGTCAAACAAGTTATCA----------------------------------------- 676
consensus_7625#2 ------------------------------------------------------------
consensus_7625#0 CAGCTTTCTCAGTTTAACATACACAAGACATTTTGTCGATTCTTGGTTGTGGCCTGGGTG 920
consensus_7625#1 ------------------------------------------------------------
consensus_7625#2 ------------------------------------------------------------
consensus_7625#0 TATTGACACGCCGAGCTGATAATGTCGAANTTTNA 955
consensus_7625#1 -----------------------------------
consensus_7625#2 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||