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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7635#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 879 fasta sequence
[AGGGGGCTCCTCCATTCGGTCGCCTCGCCTTGGAATATTCCAAGCTTGCGGGACTAGCCACTAGCCAGCTCAGCCAGGGGAAGGGGAGGAGCTGCAAGCCCAACCCCCTGCTCAACCCTAAATTGCTTCCGCCGATCGCCCAGGGACTANGAGTGTTACTATGGCTAGAGCAAATGAGATGGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGCTCGTAACTACATGTTGTATTTGTCATTGTTTGACATTCTTGGAAGAATGGAGCTATCCCGGCTTGAGGCCTACCGAGAGTTACAGCTGCTGTTTCAAAATTACCCGGATTTGCACGAAGAGCTTGAAAAGTTTAGACCTCCAGTGCCTATAAAACATCCAGCAAACAACATTTGGCCCTGGCTTTTTGCTTGTGCTGTTCCGCTGGTGGCAGTAAGCCTAATTCCTGCTCTCGGAAATCCAGTACTGTGGTTTGTCCAACAAACACTAGGTGAAAAAATGAAGGCGTAATTCCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGTGTATATATTTAGAGAGACATCCCAGGAAATTTCGGTTTTATTGGGCATCAAGTAGGGAGAAAGGAAAATTAGTCACCACTTGCAGGAAGCAGCAACATTATGCTCCTGAA-TTTGTTTGGAGTATTAGTCCAAGATGATTTCANGCTTTCAGCTGCCTGCTNTNACGATACCGCATTTGGAGAGTACAAGAGTCGAAATGTTAAGTCTTTTAGAGACAAA]
[+] EMBL CA766199 [AGGGGGCTCCTCCATTCGGTCGCCTCGCCTTGGAATATTCCAAGCTTGCGGGACTAGCCACTAGCCAGCTCAGCCAGGGGAAGGGGAGGAGCTGCAAGCCCAACCCCCTGCTCAACCCTAAATTGCTTCCGCCGATCGCCCAGGGACTANGAGTGTTACTATGGCTAGAGCAAATGAGATGGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGCTCGTAACTACATGTTGTATTTGTCATTGTTTGACATTCTTGGAAGAATGGAGCTATCCCGGCTTGAGGCCTACCGAGAGTTACAGCTGCTGTTTCAAAATTACCCGGATTTGCACGAAGAGCTTGAAAAGTTTAGACCTCCAGTGCCTATAAAACATCCAGCAAACAACATTTGGCCCTGGCTTTTTGCTTGTGCTGTTCCGCTGGTGGCAGTAAGCCTAATTCCTGCTCTCGGAAATCCAGTACTGTGGTTTGTCCAACAAACACTAGGTGAAAAAATGAAGGCGTAATTCCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGTGTATATATTTAGAGAGACATCCCAGGAAATTTCGGTTTTATTGGGCATCAAGTAGGGAGAAAGGAAAATTAGTCACCACTTGCAGGAAGCAGCAACATTATGCTCCTGAANTTGGTTTGGAGTATTA ]
[+] EMBL CB096768 [ GGAAGGGGAGGAGCTGCAAGCCCAACCCCCTGCTCAACCCTAAATTGCTTCCGCCGATCGCCCAGGGACTA GAGTGTTACTATGGCTAGAGCAAATGAGATGGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGCTCGTAACTACATGTTGTATTTGTCATTGTTTGACATTCTTGGAAGAATGGAGCTATCCCGGCTTGAGGCCTACCGAGAGTTACAGCTGCTGTTTCAAAATTACCCGGATTTGCACGAAGAGCTTGAAAAGTTTAGACCTCCAGTGCCTATAAAACATCCAGCAAACAACATTTGGCCCTGGCTTTTTGCTTGTGCTGTTCCGCTGGTGGCAGTAAGCCTAATTCCTGCTCTCGGAAATCCAGTACTGTGGTTTGTCCAACAAACACTAGGTGAAAAAATGAAGGCGTAATTCCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGTGTATATATTTAGAGAGACATCCCAGGAAATTTCGGTTTTATTGGGCATCAAGTAGGGAGAAAGGAAAATTAGTCACCACTTGCAGGAAGCAGCAACATTATGCTCCTGAA TTTGTTTGGAGTATTAGTCCAAGATGATTTCANGCTTTCAGCTGCCTGCTNTNACGATACCGCATTTGGAGAGTACAAGAGTCGAAA ]
[-] EMBL CA762935 [ AGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGCTCGTAACTACATGTTGTATTTGTCATTGTTTGACATTCTTGGAAGAATGGAGCTATCCCGGCTTGAGGCCTACCGAGAGTTACAGCTGCTGTTTCAAAATTACCCGGATTTGCACGAAGAGCTTGAAAAGTTTAGACCTCCAGTGCCTAT AAACATCCAGCAAACAACATTTGGCCCTGGCTTTTTGCTTGTGCTGTTCCGCTGGTGGCAGTAAGCCTAATTCCTGCTCTCGGAAATCCAGTACTGTGGTTTGTCCAACAAACACTAGGTGAAAAAATGAAGGCGTAATTCCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGTGTATATATTTAGAGAGACACCCCAGGAAATTTCGGTTTTATTGGGCATCAAGTAGGGAGAAAGGAAAATTAGTCACCACTTGCAGGAAGCAGCAACATTATGCTCCTGAA TTTGTTTGGAGTATTAGTCCAAGATGATTTCAGGCTTTCAGCTGCCTGCTATAACGATACCGCATTT GAGAGTACAAGAGTTGAACTGTTAAGTCTTTTAGAGACAAA]
consensusID : consensus_7635#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence
[GGAGTTGTAATGATAATTATTTGCTCAACCCTAAATTGCTTCCGCCGATCGCCCAGGGACTAGAGTGTTACTATGGCTAGAGCAAATGAGATGGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGTGACTTCAGTGTTATTATAGTTTTTTTTTGCATGTTACATGATCTACATTCTTGTGATTGCGATGCAGGTCTTACATTGCTAGGTACTCACCTGTCTACTAAATCATAATTTGTTTGGTCATGTCCATTTTTTTTGTTTCATAATCTGATGTATAACAACCATCAAAATTTTGATGAATGCAAGAATCCCATCTCTTGATATCTTTATTTTTTTTAGAACTCAGATCTTTATAAATTCTTGTGAGATCTTTATAAATACATCGGGTTGTACAAGCAAGTCATGTTCTGAATTTTTTTTGATGGATAAGTTCAATCGTGGTTAAACAGCCTGCCACTCGACACTGTCCTGAGGGATATTGACCCATGTGGCCATGTGTAATGCTAAATTATATTTCGGAAGCTCTTGCTGCATGTTCTACATATATAGAAGCAGCCTGCAATAGTTTTGTGGAAAAATATAGGTAAGGGAACAGAAGCATGATATAGATCAGTTAAAAACGCCTGCTAC]
[+] EMBL CB682031 [GGAGTTGTAATGATAATTATTTGCTCAACCCTAAATTGCTTCCGCCGATCGCCCAGGGACTAGAGTGTTACTATGGCTAGAGCAAATGAGATGGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCCACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGTGACTTCAGTGTTATTATAGTTTTTTTTTGCATGTTACATGATCTACATTCTTGTGATTGCGATGCAGGTCTTACATTGCTAGGTACTCACCTGTCTACTAAATCATAATTTGTTTGGTCATGTCCATTTTTTTTGTTTCATAATCTGATGTATAACAACCATCAAAATTTTGATGAATGCAAGAATCCCATCTCTTGATATCTTTATTTTTTTTAGAACTCAGATCTTTATAAATTCTTGTGAGATCTTTATAAATACATCGGGTTGTACAAGCAAGTCATGTTCTGAATTTTTTTTGATGGATAAGTTCAATCGTGGTTAAACAGCCTGCCACTCGACACTGTCCTGAGGGATATTGACCCATGTGGCCATGTGTAATGCTAAATTATATTTCGGAAGCTCTTGCTGCATGTTCTACATATATAGAAGCAGCCTGCAATAGTTTTGTGGAAAAATATAGGTAAGGGAACAGAAGCATGATATAGATCAGTTAAAAACGCCTGCTAC]
consensusID : consensus_7635#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 184 fasta sequence
[AAGCGAATTCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGTGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAACCCCTGTCTTCCCGTTAAAACCGTAT]
[+] EMBL CF329369 [AAGCGAATTCAACTATCCTGCAGCTTGGATATGTGCTCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCATGTGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAACCCCTGTCTTCCCGTTAAAACCGTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7635#0 AGGGGGCTCCTCCATTCGGTCGCCTCGCCTTGGAATATTCCAAGCTTGCGGGACTAGCCA 60
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 ------------------------------------------------------------
consensus_7635#0 CTAGCCAGCTCAGCCAGGGGAAGGGGAGGAGCTGCAAGCCCAACCCCCTGCTCAACCCTA 120
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 ---------------------------GGAGTTGTAATGATAATTATTTGCTCAACCCTA 33
consensus_7635#0 AATTGCTTCCGCCGATCGCCCAGGGACTANGAGTGTTACTATGGCTAGAGCAAATGAGAT 180
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 AATTGCTTCCGCCGATCGCCCAGGGACTAG-AGTGTTACTATGGCTAGAGCAAATGAGAT 92
consensus_7635#0 GGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCC 240
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 GGTCAGGGCAGACTCAAGGATGATGGTTGTCTTTAGTGCCCTGGCATCTAAATCAGGGCC 152
consensus_7635#0 ACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGCTCGTAACTACATGTT 300
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 ACTGACATTTGAAGACTCGCTCAGATTTGTCAAGAAAGTGAAGGTGACTTCAGTGTTATT 212
consensus_7635#0 GTA-TTTGTCATTGTTTGACATTCTTGGAAGAATGGAGCTATCCCGGCTTGAGGCCTACC 359
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 ATAGTTTTTTTTTGCATGTTACATGATCTACATTCTTGTGATTGCGATGCAGGTCTTACA 272
consensus_7635#0 GAGAGTTACAGCTGCTGTTTCAAAATTACCCGGATTTGCACGAAGAGCTTGAAAAGTTTA 419
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 TTGCTAGGTACTCACCTGTCTACTAAATCATAATTTGTTTGGTCATGTCCATTTTTTTTG 332
consensus_7635#0 GACCTCCAGTGCCTATAAAACATCCAGCAAACAACATTTGGCCCTGGCTTTTTGCTTGTG 479
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 TTTCATAATCTGATGTATAACAACCATCAAAATTTTGATGAATGCAAGAATCCCATCTCT 392
consensus_7635#0 CTGTTCCGCTGGTGGCAGTAAGCCTAATTCCTGCTCTCGGAAATCCAGTACTGTGGTTTG 539
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 TGATATCTTTATTTTTTTTAG----AACTCAGATCTTTATAAATTC--TTGTGAGATCTT 446
consensus_7635#0 TCCAACAAACACTAGGTGAAAAAATGAAGGCGTAATTCCAACTATCCTGCAGCTTGGATA 599
consensus_7635#2 -----------------------------AAGCGAATTCAACTATCCTGCAGCTTGGATA 31
consensus_7635#1 TATAA-ATACATCGGGTTGTACAAGCAAGTCATGTTCTGAATTTTTTTTGA---TGGATA 502
** * * * * ******
consensus_7635#0 TGTGC--TCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCA 657
consensus_7635#2 TGTGC--TCCACTTCATGTCATTTATCCCATCGATGACTGTAATTATTAATGTGCTCGCA 89
consensus_7635#1 AGTTCAATCGTGGTTAAACAGCCTGCCAC-TCGAC-ACTGTCCTGAGGGATATTGACCCA 560
** * ** * * * * * **** ***** * * ** * * **
consensus_7635#0 TGTGTATATATTTAGAGAGACATCCCAGGAAATTTCGGTTTTATTGGGCATCAAGTAGGG 717
consensus_7635#2 TGTGTATAAA---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA 146
consensus_7635#1 TGTGGCCATGTGTAATGCTAAATTATATT---TCGGAAGCTCTTGCTGCATGTTCTACAT 617
**** * * * * * * **
consensus_7635#0 AGAAAGGAAAATTAGTCACCACTTGCAGGAAGCAGCAACATTATGCTCCTGAATTTGTTT 777
consensus_7635#2 AAAAAAAAAAAACCCCTGTCTTCCCGTTAAAACCGTAT---------------------- 184
consensus_7635#1 ATATAGAAGCAGCCTGCAATAGTTTTGTGGAAAAATATAGGTAAGGGAACAGAAGCATGA 677
* * * * * * *
consensus_7635#0 GGAGTATTAGTCCAAGATGATTTCANGCTTTCAGCTGCCTGCTNTNACGATACCGCATTT 837
consensus_7635#2 ------------------------------------------------------------
consensus_7635#1 TATAGATCAGTTAAAAACGCCTGCTAC--------------------------------- 704
consensus_7635#0 GGAGAGTACAAGAGTCGAAATGTTAAGTCTTTTAGAGACAAA 879
consensus_7635#2 ------------------------------------------
consensus_7635#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||