These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1277 fasta sequence [CTCGGCGGGCTGTATCTCAGATTAGGAGAACCTGACAAGGCAATCCACCACTTCAAGCAATCGGCGAACGACTCGACGGGCGCGGACGTGTCGCGCGCACAGTCGGTCAAGAGCCGCGTCGCCAAGTGCGGCGACGCGCGCAAGCTGAGGAACTGGATCACGGTGCTGCAGGAATCGCAGGCCGCCGTCGCCGACGGCGCCG-ACTGCGCCCCACAGGTCATGGCGTTGCAAGCCGAGGCCCTGGTGAAGCTGAGCCGGCACGACGAGGCCGACGCTGTGCTGGGCGGCGCGCCGCGGTTCGGCGTCGACGAATCGACCAAGTTCTTCGGCACCGTCGCCCATGCCTACGTCCTCATGATCCGTGCTCAGGTCGACATGGCTGCTGGGAGGTTTGAGGACGCGGTGGCGACGGCGCAGACGGCGTGCCAGCTCGACCCGAGCAACCGGGAGATCGCGAACGTGCACCGGCGGGCCAAGGTGGTGGCGTCGGCGAGGCTGCGCGGGAACGACCTCTTCAAGGCGTCCAGGTTCGCCGAGGCGTGCGCCGCCTACTGCGAGGGCCTCGACAGGGAGACCGGCAACGCCGTGCTGCTCTGCAACCGCGCCGCGTGCCACGCGAGGCTCGCGCGGTACGAGAAGGCCGTCGAGGACTGCAACGGCGCGCTCGCCATGCGGCCGGCGTACAGCAAGGCGCGCCTCAGGAGGGCCGACTGCAACGTCAAGCTGGAGAGATGGGAAGCGTCG-TTGCGAGATTACCAGGTGCTGAT-CCAAGAACTCCCGGAGAACGAGGACATGAAGAAGGCGCTGTCCGAGGTCGAAG-CCAAGCTCCGGAGCCAGAGGAATGGGGGCATTGCAAGCAGATCACAACAGTGACGCCATGCTTCTTTAATCTGTCGGCTA-CCCGAAATCAACTGCAAGATCTGAAGAGG-ACAAGACTTTGGACAAAACAATGCAGCACGCACCATTGCGCGGTTTGTTAGTGTCAAGTCAGTATGATTCTTTTTTTGTGCACTATACGCCAAATTACAAGAGAATTGAGAGTAATGAAACTGTACATAATACTTGCTGCACCGAGAA-GTATAGCTAGTTAATTTGAATGTGGGTTGGCAGTGATAGCAACCATGAAAGTTTCTGAAGATTTAAGTTTGCCTCACACAAAAAACATACTGGGTTGTACTTTGTACTACAAAACTAATATCCATCCCAAACAGAAAATGAGTGAGTATCCATTTGAGCATGGCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK072727 [CTCGGCGGGCTGTATCTCAGATTAGGAGAACCTGACAAGGCAATCCACCACTTCAAGCAATCGGCGAACGACTCGACGGGCGCGGACGTGTCGCGCGCACAGTCGGTCAAGAGCCGCGTCGCCAAGTGCGGCGACGCGCGCAAGCTGAGGAACTGGATCACGGTGCTGCAGGAATCGCAGGCCGCCGTCGCCGACGGCGCCG ACTGCGCCCCACAGGTCATGGCGTTGCAAGCCGAGGCCCTGGTGAAGCTGAGCCGGCACGACGAGGCCGACGCTGTGCTGGGCGGCGCGCCGCGGTTCGGCGTCGACGAATCGACCAAGTTCTTCGGCACCGTCGCCCATGCCTACGTCCTCATGATCCGTGCTCAGGTCGACATGGCTGCTGGGAGGTTTGAGGACGCGGTGGCGACGGCGCAGACGGCGTGCCAGCTCGACCCGAGCAACCGGGAGATCGCGAACGTGCACCGGCGGGCCAAGGTGGTGGCGTCGGCGAGGCTGCGCGGGAACGACCTCTTCAAGGCGTCCAGGTTCGCCGAGGCGTGCGCCGCCTACTGCGAGGGCCTCGACAGGGAGACCGGCAACGCCGTGCTGCTCTGCAACCGCGCCGCGTGCCACGCGAGGCTCGCGCGGTACGAGAAGGCCGTCGAGGACTGCAACGGCGCGCTCGCCATGCGGCCGGCGTACAGCAAGGCGCGCCTCAGGAGGGCCGACTGCAACGTCAAGCTGGAGAGATGGGAAGCGTCG TTGCGAGATTACCAGGTGCTGAT CCAAGAACTCCCGGAGAACGAGGACATGAAGAAGGCGCTGTCCGAGGTCGAAG CCAAGCTCCGGAGCCAGAGGAATGGGGGCATTGCAAGCAGATCACAACAGTGACGCCATGCTTCTTTAATCTGTCGGCTA CCCGAAATCAACTGCAAGATCTGAAGAGG ACAAGACTTTGGACAAAACAATGCAGCACGCACCATTGCGCGGTTTGTTAGTGTCAAGTCAGTATGATTCTTTTTTTGTGCACTATACGCCAAATTACAAGAGAATTGAGAGTAATGAAACTGTACATAATACTTGCTGCACCGAGAA GTATAGCTAGTTAATTTGAATGTGGGTTGGCAGTGATAGCAACCATGAAAGTTTCTGAAGATTTAAGTTTGCCTCACACAAAAAACATACTGGGTTGTACTTTGTACTACAAAACTAATATCCATCCCAAACAGAAAATGAGTGAGTAT ] [+] EMBL OSC106061 [ TGCTGCAGGAATCGCAGGCCGACGTCGCCGACGGAGCTGAACTNCGCCCCACAGGTCATGGCGTTGCAAGCCGAGGCCCTGGTGAAGCTGAGCCGNCACGACGAGGCCGACGCTGTGCTGGGCGGCGCGCCGCGGTTCGGCGTCGACGAATCGANCAAGTTCTTCGGCACCGTCGNCCATGCCTACGTCCTCATGATCCGTGCTCAGGTCGACATGGCTGCTGGGAGGTTTGAGGACGCGGTGGNGACGGCGCAG ] [+] EMBL C96713 [ cCCGACTGC ACGTCAAGCTGGAGAGATGGGAAGCGTCGTTTNCGAGATTACCAGGTGCTGATCCCAAGAACTCCCGGAGAACGNGGACATGAAGAAGGCGCTGTCCGAGGTCGAAGCCCAAGCTCCGGAGCCAGAGGAATGGGGGCATTGCAAGCAGATCACAACAGTGACGCCATGCTTCTTTAATCTGTCGGCTA CCCGAAATCAACTGCAAGATCTGAAGAGG ACAAGACTTTGGACAAAACAATGCAGCACGCACCATTGCGCGGTTTGTTAGTGTCAAGTCAGTATGATTCTTTTTTTGTGCACTATACGCCAAATTACAAGAGAATTGAGAGTAATGAAACTGTACATAATACTTGCTGCACCGAGAA GTATAGCTAGTTAATTTGAATGTGGGTTGGCAGTGATAGCAACCATGAAAGTTTCTGAAGATTTAAGTTTGCCTCACACAAAAAACATACTGGGTTGTACTTTGTACTACAAAACTAATATCCATCCCAAACAGAAAATGAGTGAGTATCCATTTGAGCATGGCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C97243 [ gtccgggnTTCTTTAATCTGNCGGCTACCCCGAAATCAACTGCAAGATCTGAAGAGGNCCAAGACTTTGGACNAAACAATGCAGCACGCNCCATTGCGCGGTTTGTTAGTGTCAAGTCAGTATGATTCTTTTTTTGTGCNCTATACGCCAAATTNCAAGAGAATTGAGAGTAATGAAACTGTACATAATACTTGCTGCACCGAGAA GTATAGCTAGTTAATTTGAATGTGGGTTGGCAGTGATAGCAACCATGAAAGTTTCTGAAGATTTAAGTTTGCCTCACACANAAAACATACTGGGTTGTACTTTNTACTACAAAACTAATATCCATCCCAAACNGAAAATGAGTGAGTATCCATTTGAGCA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU161054 [ ATCTGTCGGCTA CCCGAAATCAACTGCAAGATCTGAAGAGG ACAAGACTTTGGACAAAACAATGCAGCACGCACCATTGCGCGGTTTGTTAGTGTCAAGTCAGTATGATTCTTTTTTTGTGCACTATACGCCAAATTACAAGAGAATTGAGAGTAATGAAACTGTACATAATACTTGCTGCACCGAGAAGGTATAGCTAGTTAATTTGAATGTtg ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||