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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7643#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 943 fasta sequence
[GCATACATATGGTGGCACTAGACTTGAGAAATCCTCCCTCCGCCGCCACGACCGTCAAGGAGGACCAGCAGTTCACCATCTTCATCGACGGCGTGGAGACAGCCCTCCACGAGGGTGTGATCCAGTGGAACGGCGGCACGGTCACTTTGGTCAGCACGGGTGTCCTCGCGGTCGACCGTCTCCAGCACGTCCTGGTGCGCGGCGGGGGCAGTGGTGACGTGAGCTTCACCCGGTGCGGCTTCGCGGCCGCGGAGGCCTGCGGGGTCGCGTCGTTCCATCGGTGCGACGCCGTGCGGGCGGACGGGGCGCGGGAGGTGGCCGTGCGCCGATGCAGGTCCGCGGACGTGGAGCGCGCCGGCGTGGTGGCCATCCGCCGGTGCAAGGGCGCCGCGCGCGTGCGCGGCGCGGGGGAACTTCACGTCGGGCGGTGCCACGAGGCCAACGTGGGCGGGTGCGCGGACGTCGCGGTAGGCCGGTGTCGCGCCGCGCGCGCCGACTGGTGCGGCGCGATCGGCATCGAGCGGTGCGGGTCGGCGGACGTGAGTCGGTGCGGCGCCGTCCGCGTGGATCGATGCCGCGCCGCGTCCGTGTCGGGCTGCGGCAGCGTAGCGGTGCGCCGTGGCAAGGTGAACGTGATCGAACAGCCGCCGGTTTGTCAAGAGAAGCCGATGTACCACCTCGTCCACGCTGAGCCAGTCTACGCGATCCCTTTGGAAATATCGAGCGAGATTAAATTGCAGTAAACCGGGCAGTGCCAGCGGGCTAAAGGTCTGATATGCTGATGATATATATGCGTGTCGGTGTGATAAGTATACGTAATATACTATTGTAATATAATGTGTGGTTTGTACGGAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAACCAAAAAAAACC]
[+] EMBL CB676694 [GCATACATATGGTGGCACTAGACTTGAGAAATCCTCCCTCCGCCGCCACGACCGTCAAGGAGGACCAGCAGTTCACCATCTTCATCGACGGCGTGGAGACAGCCCTCCACGAGGGTGTGATCCAGTGGAACGGCGGCACGGTCACTTTGGTCAGCACGGGTGTCCTCGCGGTCGACCGTCTCCAGCACGTCCTGGTGCGCGGCGGGGGCAGTGGTGACGTGAGCTTCACCCGGTGCGGCTTCGCGGCCGCGGAGGCCTGCGGGGTCGCGTCGTTCCATCGGTGCGACGCCGTGCGGGCGGACGGGGCGCGGGAGGTGGCCGTGCGCCGATGCAGGTCCGCGGACGTGGAGCGCGCCGGCGTGGTGGCCATCCGCCGGTGCAAGGGCGCCGCGCGCGTGCGCGGCGCGGGGGAACTTCACGTCGGGCGGTGCCACGAGGCCAACGTGGGCGGGTGCGCGGACGTCGCGGTAGGCCGGTGTCGCGCCGCGCGCGCCGACTGGTGCGGCGCGATCGGCATCGAGCGGTGCGGGTCGGCGGACGTGAGTCGGTGCGGCGCCGTCCGCGTGGATCGATGCCGCGCCGCGTCCGTGTCGGGCTGCGGCAGCGTAGCGGTGCGCCGTGGCAAGGTGAACGTGATCGAACAGCCGCCGGTTTGTCAAGAGAAGCCGATGTACCACCTCGTCCACGCTGAGCCAGTCTACGCGATCCCTTTGGAAATATCGAGCGAGATTAAATTGCAGTAAACCGGGCAGTGCCAGCGGGCTAAAGGTCTGATATGCTGATGATATATATGCGTGTCGGTGTGATAAGTATAC ]
[+] EMBL CA765161 [ TCTGATATGCTGATGATATATATGCGTGTCGGTGTGATAAGTATACGTAATATACTATTGTAATATAATGTGTGGTTTGTACGGAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAACCAAAAAAAACC]
consensusID : consensus_7643#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 611 fasta sequence
[CGGCGCGGGGGAACTTCACGTCGGGCGGTGCCACGAGGCCAACGTGGGCGGGTGCGCGGACGTCGCGGTAGGCCGGTGTCGCGCCGCGCGCGCCGACTGGTGCGGCGCGATCGGCATCGAGCGGTGCGGGTCGGCGGACGTGAGTCGGTGCGGCGCCGTCCGCGTGGATCGATGCCGCGCCGCGTCCGTGTCGGGCTGCGGCAGCGTAGCGGTGCGCCGTGGCAAGGTGAACGTGATCGAACAGCCGCCGGTTTGTCAAGAGAAGCCGATGTACCACCTCGTCCACGCTGAGCCAGTCTACGCGATCCCTTTGGAAATATCGAGCGAGATTAAATTGCAGTAGACCGGGCAGTGCCAGCGGGCTAAAGGTCTGATATGCTGATGATATATATGCGTGTCGGTGTGATAAGTATACGTAATATACTATTGTAATATAATGTGTGGTTTGTACGGAGTATATATGCACAAGGATTATACTTTTNAATAAAGGGACAACGTTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
[+] EMBL CA755594 [CGGCGCGGGGGAACTTCACGTCGGGCGGTGCCACGAGGCCAACGTGGGCGGGTGCGCGGACGTCGCGGTAGGCCGGTGTCGCGCCGCGCGCGCCGACTGGTGCGGCGCGATCGGCATCGAGCGGTGCGGGTCGGCGGACGTGAGTCGGTGCGGCGCCGTCCGCGTGGATCGATGCCGCGCCGCGTCCGTGTCGGGCTGCGGCAGCGTAGCGGTGCGCCGTGGCAAGGTGAACGTGATCGAACAGCCGCCGGTTTGTCAAGAGAAGCCGATGTACCACCTCGTCCACGCTGAGCCAGTCTACGCGATCCCTTTGGAAATATCGAGCGAGATTAAATTGCAGTAGACCGGGCAGTGCCAGCGGGCTAAAGGTCTGATATGCTGATGATATATATGCGTGTCGGTGTGATAAGTATACGTAATATACTATTGTAATATAATGTGTGGTTTGTACGGAGTATATATGCACAAGGATTATACTTTTNAATAAAGGGACAACGTTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
[-] EMBL C27090 [ CGACCCNATCGGCATCGAACGGTNCGGGTCGGCGGACGTGAGTCGGTGCGGCGCCGTCCGCGTGGATCGATGCC CGCCGCGTCCGTGTCGGGCTGCGGCAGCGTAGCGGTGCGCCGTGGCAAGGTGAACGTGATCGAACAGCCGCCGGTTTGTCAAGAGAAGCCGATGTACCACCTCGTCCACGCTGAGCCAGTCTACGCGATCCCTTTGGAAATATCGAGCGAGATTAAATTGCAGTAGACCGGGCAGTGCCAGCGGGCTAAAGGTCTGATATGCTGATGATATATATGCGTGTCGGTGTGATAAGTATACGTAATATACTATTGTAATATAATGTGTGGTTTGTACGGAGTATATATGCACAAGGATT ]
consensusID : consensus_7643#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence
[AGAAGATATCTGCATAAAAATGGTGGCACTAGACTTGAGAAATCCTCCCTCCGCCGCCACGACCGTCAAGGAGGACCAGCAGTTCACCATCTTCATCGACGGCGTGGAGCANCCTCCACGAGGGTGTGATNCAGTGGACGCGGCACGGTCACTTTTGTCANCACGGGTGTCCTCGCGTCGCCGTCTCAGACGTCTGGTCGCGCGGGGGAGTGGTACGTAGTTACCCGTGCGGTTCGGGCGCACCGGTGGAGTCANTTTTTT]
[+] EMBL OS1321653 [AGAAGATATCTGCATAAAAATGGTGGCACTAGACTTGAGAAATCCTCCCTCCGCCGCCACGACCGTCAAGGAGGACCAGCAGTTCACCATCTTCATCGACGGCGTGGAGCANCCTCCACGAGGGTGTGATNCAGTGGACGCGGCACGGTCACTTTTGTCANCACGGGTGTCCTCGCGTCGCCGTCTCAGACGTCTGGTCGCGCGGGGGAGTGGTACGTAGTTACCCGTGCGGTTCGGGCGCACCGGTGGAGTCANTTTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7643#0 ------------------------------------------------------------
consensus_7643#2 ------------------------------------------------------------
consensus_7643#1 CGGCGCGGGGGAACTTCACGTCGGGCGGTGCCACGAGGCCAACGTGGGCGGGTGCGCGGA 60
consensus_7643#0 ------------------------------------------------------------
consensus_7643#2 ------------------------------------------------------------
consensus_7643#1 CGTCGCGGTAGGCCGGTGTCGCGCCGCGCGCGCCGACTGGTGCGGCGCGATCGGCATCGA 120
consensus_7643#0 ------------------------------------------------------------
consensus_7643#2 ------------------------------------------------------------
consensus_7643#1 GCGGTGCGGGTCGGCGGACGTGAGTCGGTGCGGCGCCGTCCGCGTGGATCGATGCCGCGC 180
consensus_7643#0 ------------------------------------------------------------
consensus_7643#2 ------------------------------------------------------------
consensus_7643#1 CGCGTCCGTGTCGGGCTGCGGCAGCGTAGCGGTGCGCCGTGGCAAGGTGAACGTGATCGA 240
consensus_7643#0 ------------------------------------------------------------
consensus_7643#2 ------------------------------------------------------------
consensus_7643#1 ACAGCCGCCGGTTTGTCAAGAGAAGCCGATGTACCACCTCGTCCACGCTGAGCCAGTCTA 300
consensus_7643#0 ----------------------------------------------GCATACATATGGTG 14
consensus_7643#2 -----------------------------------AGAAGATATCTGCATAAAAATGGTG 25
consensus_7643#1 CGCGATCCCTTTGGAAATATCGAGCGAGATTAAATTGCAGTAGACCGGGCAGTGCCAGCG 360
* * * *
consensus_7643#0 G-CACTAGACTTGAGAAATCCTCCCTCCGCCGCCACGACCGT-CAAGGAGGACCAGCAGT 72
consensus_7643#2 G-CACTAGACTTGAGAAATCCTCCCTCCGCCGCCACGACCGT-CAAGGAGGACCAGCAGT 83
consensus_7643#1 GGCTAAAGGTCTGATATGCTGATGATATATATGCGTGTCGGTGTGATAAGTATACGTAAT 420
* * ** *** * * * * * ** * ** * * * *
consensus_7643#0 TCACCATCTTCATCGACGGCGTGGA--GACAGCCCTCCACGAGGGTGTGATCCAGTGGAA 130
consensus_7643#2 TCACCATCTTCATCGACGGCGTGGA--G--CANCCTCCACGAGGGTGTGATNCAGTGGA- 138
consensus_7643#1 ATACTATTGTAATATAATGTGTGGTTTGTACGGAGTATATATGCACAAGGATTATACTTT 480
** ** * ** * * **** * * * * * *
consensus_7643#0 CGGCGGCACGGTCACTTTGGTCAGCACGGGTGTCCTCGCGGTCGACCGTCTCCAGCACGT 190
consensus_7643#2 -CGCGGCACGGTCACTTTTGTCANCACGGGTGTCCTCGCG-TCG-CCGTCTCAG--ACGT 193
consensus_7643#1 TNAATAAAGGGACAACGTTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNN 538
* ** ** * * *
consensus_7643#0 CCTGGTGCGCGGCGGGGGCAGTGGTGACGTGAGCTTCACCCGGTGCGGCTTCGCGGCCGC 250
consensus_7643#2 CTGGTCGCGCGGGGG----AGTGGT-ACGTAG---TTACCCG-TGCGGTT---CGGGCGC 241
consensus_7643#1 NNNNNNNNNNNNNNN----NNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNN 591
consensus_7643#0 GGAGGCCTGCGGGGTCGCGTCGTTCCATCGGTGCGACGCCGTGCGGGCGGACGGGGCGCG 310
consensus_7643#2 A----CCGGTGGAGTCANTTTTTT------------------------------------ 261
consensus_7643#1 N----NNNNNNNNNNNNNNNNNNN------------------------------------ 611
consensus_7643#0 GGAGGTGGCCGTGCGCCGATGCAGGTCCGCGGACGTGGAGCGCGCCGGCGTGGTGGCCAT 370
consensus_7643#2 ------------------------------------------------------------
consensus_7643#1 ------------------------------------------------------------
consensus_7643#0 CCGCCGGTGCAAGGGCGCCGCGCGCGTGCGCGGCGCGGGGGAACTTCACGTCGGGCGGTG 430
consensus_7643#2 ------------------------------------------------------------
consensus_7643#1 ------------------------------------------------------------
consensus_7643#0 CCACGAGGCCAACGTGGGCGGGTGCGCGGACGTCGCGGTAGGCCGGTGTCGCGCCGCGCG 490
consensus_7643#2 ------------------------------------------------------------
consensus_7643#1 ------------------------------------------------------------
consensus_7643#0 CGCCGACTGGTGCGGCGCGATCGGCATCGAGCGGTGCGGGTCGGCGGACGTGAGTCGGTG 550
consensus_7643#2 ------------------------------------------------------------
consensus_7643#1 ------------------------------------------------------------
consensus_7643#0 CGGCGCCGTCCGCGTGGATCGATGCCGCGCCGCGTCCGTGTCGGGCTGCGGCAGCGTAGC 610
consensus_7643#2 ------------------------------------------------------------
consensus_7643#1 ------------------------------------------------------------
consensus_7643#0 GGTGCGCCGTGGCAAGGTGAACGTGATCGAACAGCCGCCGGTTTGTCAAGAGAAGCCGAT 670
consensus_7643#2 ------------------------------------------------------------
consensus_7643#1 ------------------------------------------------------------
consensus_7643#0 GTACCACCTCGTCCACGCTGAGCCAGTCTACGCGATCCCTTTGGAAATATCGAGCGAGAT 730
consensus_7643#2 ------------------------------------------------------------
consensus_7643#1 ------------------------------------------------------------
consensus_7643#0 TAAATTGCAGTAAACCGGGCAGTGCCAGCGGGCTAAAGGTCTGATATGCTGATGATATAT 790
consensus_7643#2 ------------------------------------------------------------
consensus_7643#1 ------------------------------------------------------------
consensus_7643#0 ATGCGTGTCGGTGTGATAAGTATACGTAATATACTATTGTAATATAATGTGTGGTTTGTA 850
consensus_7643#2 ------------------------------------------------------------
consensus_7643#1 ------------------------------------------------------------
consensus_7643#0 CGGAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 910
consensus_7643#2 ------------------------------------------------------------
consensus_7643#1 ------------------------------------------------------------
consensus_7643#0 AAAAAAAACCAAAAAAAAAAACCAAAAAAAACC 943
consensus_7643#2 ---------------------------------
consensus_7643#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||