cluster # 7647

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Oryza sativa
cluster # 7647 cluster # 7647 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7647#0 length = 720 sequences # 4

consensus_7647#1 length = 168 sequences # 1

consensusID : consensus_7647#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 720
fasta sequence

                              [TTTTTTTTTTTTTTTTTTCGACAACATTTCTTTAATATTTGCCATCACGGCACGATCAATTGAAACACCAAGAGTTAAAATATTTGCCCGCCGTACACTTNGAGAGCTTATAGATAATGTNTTAAGCAAAAACGNGTGATGTATGCGAACTTAGTGTTGAATAACCCATGCTATAAAGTACAAAAGGCTGCATGACATAATGTTACAGGAGACCGTTACACAGCAATAGAGCAAGAATNTTCAGNGATCAACCGAAAGTTGCTGTCCGCTAGCTCGGGAACTTCGTTGAGTACTGCTGCGGAGACATAAATGTTGCCGTAATCATCTTTCCCGCAAACCACCTCCCATGAAGTGCTTTCTGTGCACTCATGGCAGCTGTTATACTGTCAAATCGAAGGTACACAAAGCCAGAAGTATTCTTGTCCACAAAAATGTGTTTTACTTGGCCAAACTTGGAGCATTCTTCTTGGACATCATCTTTGATATCCAAATCAAAATCAGGGTCCGTCTCCACGGATGGATCAAACATATTTTTAAGCAATAGGCATTCACTGGGTGGGGCTGTCTCAATGGCTTGGGTAGTAATTGGAAGAGACACCCCAGGAACTGAACCAAGACCAGGCACTGTAGGCAGTACAGATGCAGCGACTGGAGGAGCACCAAGAACTGATGCAGGTGGTAATCCAACAGAAGTGTTCAAACCAGTACCGGCTATCCCAG]

[-] EMBL C96872               [TTTTTTTTTTTTTTTTTTCGACAACATTTCTTTAATATTTGCCATCACGGCACGATCAATTGAAACACCAAGAGTTAAAATATTTGCCCGCCGTACACTTNGAGAGCTTATAGATAATGTNTTAAGCAAAAACGNGTGATGTATGCGAACTTAGTGTTGAATAACCCATGCTATAAAGTACAAAAGGCTGCATGACATAATGTTACAGGAGACCGTTACACAGCAATAGAGCAAGAATNTTCAGNGATCAACCGAAAGTTGCTGTCCGNTAGCTCGGGAACTTCGTTGAGTACTGCTGCGGAGACATAAATGTTGCCGTAATCATCTTTCCGGC                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB648024             [                                                                                                                                                                                                                                                           CCGAAAGTTGCTGTCCGCTAGCTCGGGAACTTCGTTGAGTACTGCTGCGGAGACATAAATGTTGCCGTAATCATCTTTCCCGCAAACCACCTCCCATGAAGTGCTTTCTGTGCACTCATGGCAGCTGTTATACTGTCAAATCGAAGGTACACAAAGCCAGAAGTATTCTTGTCCACAAAAATGTGTTTTACTTGGCCAAACTTGGAGCATTCTTCTTGGACATCATCTTTGATATCCAAATCAAAATCAGGGTCCGTCTCCACGGATGGATCAAACATATTTTTAAGCAATAGGCATTCACTGGGTGGGGCTGTCTCAATGGCTTGGGTAGTAATTGGAAGAGACACCCCAGGAACTGAACCAAGACCAGGCACTGTAGGCAGTACAGATGCAGCGACTGGAGGAGCACCAAGAACTGATGCAGGTGGTAATCCAACAGAAGTGTTCAAACCAGTACCGGCTATCCCAG]
[+] EMBL CB648242             [                                                                                                                                                                                                                                                           CCGAAAGTTGCTGTCCGCTAGCTCGGGAACTTCGTTGAGTACTGCTGCGGAGACATAAATGTTGCCGTAATCATCTTTCCCGCAAACCACCTCCCATGAAGTGCTTTCTGTGCACTCATGGCAGCTGTTATACTGTCAAATCGAAGGTACACAAAGCCAGAAGTATTCTTGTCCACAAAAATGTGTTTTACTTGGCCAAACTTGGAGCATTCTTCTTGGACATCATCTTTGATATCCAAATCAAAATCAGGGTCCGTCTCCACGGATGGATCAAACATATTTTTAAGCAATAGGCATTCACTGGGTGGGGCTGTCTCAATGGCTTGGGTAGTAATTGGAAGAGACACCCCAGGAACTGAACCAAGACCAGGCACTGTAGGCAGTACAGATGCAGCGACTGGAGGAGCACCAA                                                         ]
[+] EMBL CB638033             [                                                                                                                                                                                                                                                           CCGAAAGTTGCTGTCCGCTAGCTCGGGAACTTCGTTGAGTACTGCTGCGGAGACATAAATGTTGCCGTAATCATCTTTCCCGCAAACCACCTCCCATGAAGTGCTTTCTGTGCACTCATGGCAGCTGTTATACTGTCAAATCGAAGGTACACAAAGCCAGAAGTATTCTTGTCCACAAAAATGTGTTTTACTTGGCCAAACTTGGAGCATTCTTCTTGGACATCATCTTTGATATCCAAATCAAAATCAGGGTCCGTCTCCACGGATGGATCAAACATATTTTTAAGCAATAGGCATTCACTGGGTGGGGCTG                                                                                                                                                            ]




>consensus_7647#0
TTTTTTTTTTTTTTTTTTCGACAACATTTCTTTAATATTTGCCATCACGGCACGATCAAT
TGAAACACCAAGAGTTAAAATATTTGCCCGCCGTACACTTNGAGAGCTTATAGATAATGT
NTTAAGCAAAAACGNGTGATGTATGCGAACTTAGTGTTGAATAACCCATGCTATAAAGTA
CAAAAGGCTGCATGACATAATGTTACAGGAGACCGTTACACAGCAATAGAGCAAGAATNT
TCAGNGATCAACCGAAAGTTGCTGTCCGCTAGCTCGGGAACTTCGTTGAGTACTGCTGCG
GAGACATAAATGTTGCCGTAATCATCTTTCCCGCAAACCACCTCCCATGAAGTGCTTTCT
GTGCACTCATGGCAGCTGTTATACTGTCAAATCGAAGGTACACAAAGCCAGAAGTATTCT
TGTCCACAAAAATGTGTTTTACTTGGCCAAACTTGGAGCATTCTTCTTGGACATCATCTT
TGATATCCAAATCAAAATCAGGGTCCGTCTCCACGGATGGATCAAACATATTTTTAAGCA
ATAGGCATTCACTGGGTGGGGCTGTCTCAATGGCTTGGGTAGTAATTGGAAGAGACACCC
CAGGAACTGAACCAAGACCAGGCACTGTAGGCAGTACAGATGCAGCGACTGGAGGAGCAC
CAAGAACTGATGCAGGTGGTAATCCAACAGAAGTGTTCAAACCAGTACCGGCTATCCCAG

consensusID : consensus_7647#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 168
fasta sequence

                              [TCTCGAAGTGTACGGCGGGCAAATATTTTAACTCTTGGTGTTTCAATTGATCGTGCCGTGATGGCAAATATTAAAGAAATGTTGTCGAATTTTGGGGCAATCGTAATTGCCCAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF328904             [TCTCGAAGTGTACGGCGGGCAAATATTTTAACTCTTGGTGTTTCAATTGATCGTGCCGTGATGGCAAATATTAAAGAAATGTTGTCGAATTTTGGGGCAATCGTAATTGCCCAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_7647#1
TCTCGAAGTGTACGGCGGGCAAATATTTTAACTCTTGGTGTTTCAATTGATCGTGCCGTG
ATGGCAAATATTAAAGAAATGTTGTCGAATTTTGGGGCAATCGTAATTGCCCAGGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7647#0      TTTTTTTTTTTTTTTTTTCGACAACATTTCTTTAATATTTGCCATCACGGCACGATCAAT 60
consensus_7647#1      ---------------------------------------------------------TCT 3
                                                                                 *

consensus_7647#0      TGAAACACCAAGAGTTAAAATATTTGCCCGCCGTACACTTNGAGAGCTTATAGATAATGT 120
consensus_7647#1      CGAAGTGTACGGCGGGCAAATATTTTA-------ACTCTTGGTGTTTCAATTGATCGTGC 56
                       ***       * *   ********         ** *** * *     ** ***  ** 

consensus_7647#0      NTTAAGCAAAAACGNGTGATGTATGCGAACTTAGTGTTGAATAACCCATGCTATAAAGTA 180
consensus_7647#1      CGTGATGGCAAATATTAAAGAAATGTTGTCGAATTTTGGGGCAATCGTAATTGCCCAGGA 116
                        * *    ***      *   ***    *  * * * *   ** *     *    ** *

consensus_7647#0      CAAAAGGCTGCATGACATAATGTTACAGGAGACCGTTACACAGCAATAGAGCAAGAATNT 240
consensus_7647#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-----AAAAAAAAAAAAAAAAAAAA--- 168
                       ****      *  * * **    * *  * *     * * *  ** * *  ** **   

consensus_7647#0      TCAGNGATCAACCGAAAGTTGCTGTCCGCTAGCTCGGGAACTTCGTTGAGTACTGCTGCG 300
consensus_7647#1      ------------------------------------------------------------
                                                                                  

consensus_7647#0      GAGACATAAATGTTGCCGTAATCATCTTTCCCGCAAACCACCTCCCATGAAGTGCTTTCT 360
consensus_7647#1      ------------------------------------------------------------
                                                                                  

consensus_7647#0      GTGCACTCATGGCAGCTGTTATACTGTCAAATCGAAGGTACACAAAGCCAGAAGTATTCT 420
consensus_7647#1      ------------------------------------------------------------
                                                                                  

consensus_7647#0      TGTCCACAAAAATGTGTTTTACTTGGCCAAACTTGGAGCATTCTTCTTGGACATCATCTT 480
consensus_7647#1      ------------------------------------------------------------
                                                                                  

consensus_7647#0      TGATATCCAAATCAAAATCAGGGTCCGTCTCCACGGATGGATCAAACATATTTTTAAGCA 540
consensus_7647#1      ------------------------------------------------------------
                                                                                  

consensus_7647#0      ATAGGCATTCACTGGGTGGGGCTGTCTCAATGGCTTGGGTAGTAATTGGAAGAGACACCC 600
consensus_7647#1      ------------------------------------------------------------
                                                                                  

consensus_7647#0      CAGGAACTGAACCAAGACCAGGCACTGTAGGCAGTACAGATGCAGCGACTGGAGGAGCAC 660
consensus_7647#1      ------------------------------------------------------------
                                                                                  

consensus_7647#0      CAAGAACTGATGCAGGTGGTAATCCAACAGAAGTGTTCAAACCAGTACCGGCTATCCCAG 720
consensus_7647#1      ------------------------------------------------------------