cluster # 7669

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Oryza sativa
cluster # 7669 cluster # 7669 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7669#0 length = 1006 sequences # 2
consensus_7669#1 length = 485 sequences # 1

consensus_7669#2 length = 409 sequences # 1
consensus_7669#3 length = 156 sequences # 1

consensusID : consensus_7669#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1006
fasta sequence

                              [TTTTTTTAAAGAAACATTGGATCAAACCAGTCATTTCATTAGCTTGATTATTATATAAATTTACATCATACTTTGACATGTCTTATTTCTGTTCAAGAGTCTGGACTATTTACAAAATGTACCGTAAAGAATGAAAACTAAAGACGCAAACATGGGACCAATGGATCACACGATGTAAATAAGGGTGATGTGATCAAGCAACAATTCGAGATGCAGAGCACAAACCAAAAACAACGGAAAAAGGTTAATGTTATGGCCTTATATGGGTATTATATGTACTCACATTGAACTGCGACTCGCTTCATCATTCATCATCCCTTTAAAACTTTTGGCCAACCAGATTGCTGTTTCTCGAGGAGATACCTTATCCTTCCCGAAAGGCTTTAGAACAACCGCAAGCTCCTCCAGCCTATTGTGTTGCAGTAGATCCGCAGAAAGCTCCAGGAGTCCTTCAAGGGCCTCGGCTCGCTGCCTGAAAGACTTGACATCTAGAATTTCCTTCGTTGGGCTTGCCTCCTCCTTGAATCCATTGTTGATAGCAGTAGTAGTAGAATTTACTTCAGGGACAGTAAGAAATTTTACAACATCTGAACAGGCTGTTTTCGAGCTGATGGTATTAGTTTCCGAAATATTGGGCTTGGGTGCAGCACAATCAGGAAGTCTGTGAGGCACAAGATTATTTGATGGGATGCTTCTCGAATCCACCTCTTCTCTTACCACGTTGAGAAGCTTGCCAACATCTGAACTTTGGACTCCCATTTCAGCGTTCTCTGCAACTGCCTGTTCACCGCAGACACGGAAGCTGCTGTGTCTTATGACATGTATGACATCCTCAATTGGAGGGTTCAAATGGGGAGATGATGTTCTTTCCAGTGATTGAATAGGAGGGGATCCTTTTTCTAGTGCGAAGTTTTTCGTTGAAACAAATGGGGCAATATCTGCTACTGATGAAAGCAATTCTTGCACTGTGAACTTATCCTCATCATTCTGTACAATGGCATTGGCA]

[-] EMBL AU172991             [TTTTTTTAAAGAAACATTGGATCAAACCAGTCATTTCATTAGCTTGATTATTATATAAATTTACATCATACTTTGACATGTCTTATTTCTGTTCAAGAGTCTGGACTATTTACAAAATGTACCGTAAAGAATGAAAACTAAAGACGCAAACATGGGACCAATGGATCACACGATGTAAATAAGGGTGATGTGATCAAGCAACAATTCGAGATGCAGAGCACAAACCAAAAACAACGGAAAAAGGTTAATGTTATGGCCTTATATGGGTATTATATGTACTCACATTGAACTGCGACTCGCTTCATCATTCATCATCCCTTTAAAACTTTTGGCCAACCAGATTGCTGTTTCTCGAGGAGATACCTTATCCTTCCCGAAAGGCTTTAGAACAACCGCAAGCTCCTCCAGCCTATTGTGTTGCAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB638137             [                                                                                                                                                                                                                                                                                                                                                                                           aGCTTTAGAACAACCGCAAGCTCCTCCAGCCTATTGTGTTGCAGTAGATCCGCAGAAAGCTCCAGGAGTCCTTCAAGGGCCTCGGCTCGCTGCCTGAAAGACTTGACATCTAGAATTTCCTTCGTTGGGCTTGCCTCCTCCTTGAATCCATTGTTGATAGCAGTAGTAGTAGAATTTACTTCAGGGACAGTAAGAAATTTTACAACATCTGAACAGGCTGTTTTCGAGCTGATGGTATTAGTTTCCGAAATATTGGGCTTGGGTGCAGCACAATCAGGAAGTCTGTGAGGCACAAGATTATTTGATGGGATGCTTCTCGAATCCACCTCTTCTCTTACCACGTTGAGAAGCTTGCCAACATCTGAACTTTGGACTCCCATTTCAGCGTTCTCTGCAACTGCCTGTTCACCGCAGACACGGAAGCTGCTGTGTCTTATGACATGTATGACATCCTCAATTGGAGGGTTCAAATGGGGAGATGATGTTCTTTCCAGTGATTGAATAGGAGGGGATCCTTTTTCTAGTGCGAAGTTTTTCGTTGAAACAAATGGGGCAATATCTGCTACTGATGAAAGCAATTCTTGCACTGTGAACTTATCCTCATCATTCTGTACAATGGCATTGGCA]




>consensus_7669#0
TTTTTTTAAAGAAACATTGGATCAAACCAGTCATTTCATTAGCTTGATTATTATATAAAT
TTACATCATACTTTGACATGTCTTATTTCTGTTCAAGAGTCTGGACTATTTACAAAATGT
ACCGTAAAGAATGAAAACTAAAGACGCAAACATGGGACCAATGGATCACACGATGTAAAT
AAGGGTGATGTGATCAAGCAACAATTCGAGATGCAGAGCACAAACCAAAAACAACGGAAA
AAGGTTAATGTTATGGCCTTATATGGGTATTATATGTACTCACATTGAACTGCGACTCGC
TTCATCATTCATCATCCCTTTAAAACTTTTGGCCAACCAGATTGCTGTTTCTCGAGGAGA
TACCTTATCCTTCCCGAAAGGCTTTAGAACAACCGCAAGCTCCTCCAGCCTATTGTGTTG
CAGTAGATCCGCAGAAAGCTCCAGGAGTCCTTCAAGGGCCTCGGCTCGCTGCCTGAAAGA
CTTGACATCTAGAATTTCCTTCGTTGGGCTTGCCTCCTCCTTGAATCCATTGTTGATAGC
AGTAGTAGTAGAATTTACTTCAGGGACAGTAAGAAATTTTACAACATCTGAACAGGCTGT
TTTCGAGCTGATGGTATTAGTTTCCGAAATATTGGGCTTGGGTGCAGCACAATCAGGAAG
TCTGTGAGGCACAAGATTATTTGATGGGATGCTTCTCGAATCCACCTCTTCTCTTACCAC
GTTGAGAAGCTTGCCAACATCTGAACTTTGGACTCCCATTTCAGCGTTCTCTGCAACTGC
CTGTTCACCGCAGACACGGAAGCTGCTGTGTCTTATGACATGTATGACATCCTCAATTGG
AGGGTTCAAATGGGGAGATGATGTTCTTTCCAGTGATTGAATAGGAGGGGATCCTTTTTC
TAGTGCGAAGTTTTTCGTTGAAACAAATGGGGCAATATCTGCTACTGATGAAAGCAATTC
TTGCACTGTGAACTTATCCTCATCATTCTGTACAATGGCATTGGCA

consensusID : consensus_7669#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence

                              [CCCCTGTGATTTGCCTTTTTGTAGTGGCGGTGTTGGCCCGTCTGGTCCTGGGTGTTTTTTCTCCGTGCTGTGGGTTATCGTCCGCGCCCCTTGGTGGTGGCGCCAGATCCGCCCATTTAAAGGTGGAGTTAAGCTTCAACTTCATTTAGCCACACACCAAGCGTGTAACACCGTTAATGCTGTCCGGGCTCAGTAATGTTTTGTGTTGGGAAGTGGTGGACCGGGATTATCCAATGTGCAACCACCAGGATCCAAGCTATGGACCCAGTGAGTGTACGCCCACAGCCTCTTGAATACGACTTCACCTATTAGGGAAAGCGTGGTAACACCACTGACAAGGTACCAGGTCCAGGAATTCCCGGTCAGACCCACGCGTCCGATGTTTGTAAATAGTCCAGACTCTGGAACAAGAAATAAGACATGTGCAAAGTATGAGTAAATTTATATAATAATCAAGCTAATGAAATGGACTGTTGGATCCAAAA]

[+] EMBL BI797034             [CCCCTGTGATTTGCCTTTTTGTAGTGGCGGTGTTGGCCCGTCTGGTCCTGGGTGTTTTTTCTCCGTGCTGTGGGTTATCGTCCGCGCCCCTTGGTGGTGGCGCCAGATCCGCCCATTTAAAGGTGGAGTTAAGCTTCAACTTCATTTAGCCACACACCAAGCGTGTAACACCGTTAATGCTGTCCGGGCTCAGTAATGTTTTGTGTTGGGAAGTGGTGGACCGGGATTATCCAATGTGCAACCACCAGGATCCAAGCTATGGACCCAGTGAGTGTACGCCCACAGCCTCTTGAATACGACTTCACCTATTAGGGAAAGCGTGGTAACACCACTGACAAGGTACCAGGTCCAGGAATTCCCGGTCAGACCCACGCGTCCGATGTTTGTAAATAGTCCAGACTCTGGAACAAGAAATAAGACATGTGCAAAGTATGAGTAAATTTATATAATAATCAAGCTAATGAAATGGACTGTTGGATCCAAAA]




>consensus_7669#1
CCCCTGTGATTTGCCTTTTTGTAGTGGCGGTGTTGGCCCGTCTGGTCCTGGGTGTTTTTT
CTCCGTGCTGTGGGTTATCGTCCGCGCCCCTTGGTGGTGGCGCCAGATCCGCCCATTTAA
AGGTGGAGTTAAGCTTCAACTTCATTTAGCCACACACCAAGCGTGTAACACCGTTAATGC
TGTCCGGGCTCAGTAATGTTTTGTGTTGGGAAGTGGTGGACCGGGATTATCCAATGTGCA
ACCACCAGGATCCAAGCTATGGACCCAGTGAGTGTACGCCCACAGCCTCTTGAATACGAC
TTCACCTATTAGGGAAAGCGTGGTAACACCACTGACAAGGTACCAGGTCCAGGAATTCCC
GGTCAGACCCACGCGTCCGATGTTTGTAAATAGTCCAGACTCTGGAACAAGAAATAAGAC
ATGTGCAAAGTATGAGTAAATTTATATAATAATCAAGCTAATGAAATGGACTGTTGGATC
CAAAA

consensusID : consensus_7669#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 409
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATCAAACCAGTCATTTCATTAGCTTGATTATTATATAAATTTACATCATACTTTGACATGTCTTATTTCTGTTCAAGAGTCTGGACTATTTACAAAATGTACCGTAAAGAATGAAAACTAAAGACGCAAACATGGGACCAATGGATCACACGATGTAAATAAGGGTGATGTGATCAAGCAACAATTCGAGATGCAGAGCACAAACCAAAAACAACGGAAAAAGGTTAATGTTATGGCCTTATATGGGTATTATATGTACTCACATTGAACTGCGACTCGCTTCATCACTCATCATC]

[-] EMBL CF328077             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATCAAACCAGTCATTTCATTAGCTTGATTATTATATAAATTTACATCATACTTTGACATGTCTTATTTCTGTTCAAGAGTCTGGACTATTTACAAAATGTACCGTAAAGAATGAAAACTAAAGACGCAAACATGGGACCAATGGATCACACGATGTAAATAAGGGTGATGTGATCAAGCAACAATTCGAGATGCAGAGCACAAACCAAAAACAACGGAAAAAGGTTAATGTTATGGCCTTATATGGGTATTATATGTACTCACATTGAACTGCGACTCGCTTCATCACTCATCATC]




>consensus_7669#2
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATCAAAC
CAGTCATTTCATTAGCTTGATTATTATATAAATTTACATCATACTTTGACATGTCTTATT
TCTGTTCAAGAGTCTGGACTATTTACAAAATGTACCGTAAAGAATGAAAACTAAAGACGC
AAACATGGGACCAATGGATCACACGATGTAAATAAGGGTGATGTGATCAAGCAACAATTC
GAGATGCAGAGCACAAACCAAAAACAACGGAAAAAGGTTAATGTTATGGCCTTATATGGG
TATTATATGTACTCACATTGAACTGCGACTCGCTTCATCACTCATCATC

consensusID : consensus_7669#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 156
fasta sequence

                              [ACCTCTTCTCTNCGTTGAGAGANTTGCCANNTCTGAACTTTGGACTCCCATTTCAGNGTTCTCTNAACTGCCTGTTCACCGNAGACACGGAAGCTGCTGTGTCTTATGACATGTATGACATCCTCAATTGGAGGGTTCAATGGGGAGATGATGTTC]

[-] EMBL AA751107             [ACCTCTTCTCTNCGTTGAGAGANTTGCCANNTCTGAACTTTGGACTCCCATTTCAGNGTTCTCTNAACTGCCTGTTCACCGNAGACACGGAAGCTGCTGTGTCTTATGACATGTATGACATCCTCAATTGGAGGGTTCAATGGGGAGATGATGTTC]




>consensus_7669#3
ACCTCTTCTCTNCGTTGAGAGANTTGCCANNTCTGAACTTTGGACTCCCATTTCAGNGTT
CTCTNAACTGCCTGTTCACCGNAGACACGGAAGCTGCTGTGTCTTATGACATGTATGACA
TCCTCAATTGGAGGGTTCAATGGGGAGATGATGTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7669#0      TTTTTTTAAAGAAACATTGGATCAAACCAGTCATTTCATTAGCTTGATTATTATATAAAT 60
consensus_7669#3      ------------------------------------------------------------
consensus_7669#2      ------------------------------------------------------------
consensus_7669#1      ------------------------------------------------------------
                                                                                  

consensus_7669#0      TTACATCATACTTTGACATGTCTTATTTCTGTTCAAGAGTCTGGACTATTTACAAAATGT 120
consensus_7669#3      ------------------------------------------------------------
consensus_7669#2      ------------------------------------------------------------
consensus_7669#1      ------------------------------------------------------------
                                                                                  

consensus_7669#0      ACCGTAAAGAATGAAAACTAAAGACGCAAACATGGGACCAATGGATCACACGATGTAAAT 180
consensus_7669#3      ------------------------------------------------------------
consensus_7669#2      ------------------------------------------------------------
consensus_7669#1      ------------------------------------------------------------
                                                                                  

consensus_7669#0      AAGGGTGATGTGATCAAGCAACAATTCGAGATGCAGAGCACAAACCAAAAACAACGGAAA 240
consensus_7669#3      ------------------------------------------------------------
consensus_7669#2      ------------------------------------------------------------
consensus_7669#1      ------------------------------------------------------------
                                                                                  

consensus_7669#0      AAGGTTAATGTTATGGCCTTATATGGGTATTATATGTACTCACATTGAACTGCGACTCGC 300
consensus_7669#3      ------------------------------------------------------------
consensus_7669#2      ------------------------------------------------------------
consensus_7669#1      ------------------------------------------------------------
                                                                                  

consensus_7669#0      TTCATCATTCATCATCCCTTTAAAACTTTTGGCCAACCAGATTGCTGTTTCTCGAGGAGA 360
consensus_7669#3      ------------------------------------------------------------
consensus_7669#2      ------------------------------------------------------------
consensus_7669#1      ------------------------------------------------------------
                                                                                  

consensus_7669#0      TACCTTATCCTTCCCGAAAGGCTTTAGAACAACCGCAAGCTCCTCCAGCCTATTGTGTTG 420
consensus_7669#3      ------------------------------------------------------------
consensus_7669#2      ------------------------------------------------------------
consensus_7669#1      ------------------------------------------------------------
                                                                                  

consensus_7669#0      CAGTAGATCCGCAGAAAGCTCCAGGAGTCCTTCAAGGGCCTCGGCTCGCTGCCTGAAAGA 480
consensus_7669#3      ------------------------------------------------------------
consensus_7669#2      ------------------------------------------------------------
consensus_7669#1      ------------------------------------------------------------
                                                                                  

consensus_7669#0      CTTGACATCTAGAATTTCCTTCGTTGGGCTTGCCTCCTCCTTGAATCCATTGTTGATAGC 540
consensus_7669#3      ------------------------------------------------------------
consensus_7669#2      ------------------------------------------------------------
consensus_7669#1      ------------------------------------------------------------
                                                                                  

consensus_7669#0      AGTAGTAGTAGAATTTACTTCAGGGACAGTAAGAAATTTTACAACATCTGAACAGGCTGT 600
consensus_7669#3      ------------------------------------------------------------
consensus_7669#2      ---------------------------------------------TTTTTTTTTTTTTTT 15
consensus_7669#1      --------------------CCCCTGTGATTTGCCTTTTTGTAGTGGCGGTGTTGGCCCG 40
                                                                                  

consensus_7669#0      TTTCGAGCTGATGGTATTAGTTTCCGAAATATTGGGCTTGGGTGCAGCACAATCAGGAAG 660
consensus_7669#3      ------------------------------------------------------------
consensus_7669#2      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 75
consensus_7669#1      TCTGGTCCTGGGTGTTTTTTCTCCGTGCTGTGGGTTATCGTCCGCGCCCCTTGGTGGTGG 100
                                                                                  

consensus_7669#0      TCTGTGAGGCACAAGATTATTTGATGGGATGCTTCTCGAATCCACCTCTTCTCTTACCAC 720
consensus_7669#3      -------------------------------------------ACCTCTTCTCT----NC 13
consensus_7669#2      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATCAAACCAGTCATTTCATTAG 135
consensus_7669#1      CGCCAGATCCGCCCATTTAAAGGTGGAGTTAAGCTTCAACTTCATTTAGCCACACACCAA 160
                                                                 *                

consensus_7669#0      GTTGAGAAGCTTGCCAACAT---CTGAACTTTGGACTCCCATTTCAGCGT---TCTCTGC 774
consensus_7669#3      GTTGAGAGANTTGCCANN-T---CTGAACTTTGGACTCCCATTTCAGNGT---TCTCTN- 65
consensus_7669#2      CTTGATTATTATATAAATTTACATCATACTTTGACATGTCTTATTTCTGT---TCAAGAG 192
consensus_7669#1      GCGTGTAACACCGTTAATGCTGTCCGGGCTCAGTAATGTTTTGTGTTGGGAAGTGGTGGA 220
                                     *            **  *   *    * *    *    *      

consensus_7669#0      AACTGCCTGTTCACCG--CAGACACGGA-----AGCTGCTGTGTCTTATGA---CATGTA 824
consensus_7669#3      AACTGCCTGTTCACCG--NAGACACGGA-----AGCTGCTGTGTCTTATGA---CATGTA 115
consensus_7669#2      TCTGGACTATTTACAA--AATGTACCGT-----AAAGAATGAAAACTAAAGACGCAAACA 245
consensus_7669#1      CCGGGATTATCCAATGTGCAACCACCAGGATCCAAGCTATGGACCCAGTGAGTGTACGCC 280
                          *  * *  *      *   **        *     **              *    

consensus_7669#0      TGACATCC-TCAATTGGAGGGTT--CAAATGGGGAGATGATGTTCTTTCCAGTGATTGAA 881
consensus_7669#3      TGACATCC-TCAATTGGAGGGTT--CAA-TGGGGAGATGATGTTC--------------- 156
consensus_7669#2      TGGGACCAATGGATCACACGATG--TAAATAAGGGTGATGTGATCAAGCAACAATTCGAG 303
consensus_7669#1      CACAGCCTCTTGAATACGACTTCACCTATTAGGGAAAGCGTGGTAACACCACTGACAAGG 340
                            *  *  *        *     * *  **      ** *                

consensus_7669#0      TAGGAGG----GGATCCTTTTTCTAGTGCGAAGTTTTTCGTTGAAACAAATGGGGCAATA 937
consensus_7669#3      ------------------------------------------------------------
consensus_7669#2      ATGCAGA----GCACAAACCAAAAACAACGGAAAAAGGTTAATGTTATGGCCTTATATGG 359
consensus_7669#1      TACCAGGTCCAGGAATTCCCGGTCAGACCCACGCGTCCGATGTTTGTAAATAGTCCAGAC 400
                                                                                  

consensus_7669#0      TCTGCTACT-GATGAAAGCAATTCTTGCACTGTGAACTTATCCTCATCAT--TCTGTACA 994
consensus_7669#3      ------------------------------------------------------------
consensus_7669#2      GTATTATAT-GTACTCACATTGAACTGCGACTCGCTTCATCACTCATCAT--C------- 409
consensus_7669#1      TCTGGAACAAGAAATAAGACATGTGCAAAGTATGAGTAAATTTATATAATAATCAAGCTA 460
                                                                                  

consensus_7669#0      ATGGCATTGGCA------------- 1006
consensus_7669#3      -------------------------
consensus_7669#2      -------------------------
consensus_7669#1      ATGAAATGGACTGTTGGATCCAAAA 485