cluster # 7684

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Oryza sativa
cluster # 7684 cluster # 7684 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7684#0 length = 942 sequences # 4

consensus_7684#1 length = 365 sequences # 1

consensusID : consensus_7684#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 942
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATTGAAAACATTA-TCAGCCCAGGATCAAATGTAATAGTTTTTAGTGACAACGGTGATGCGACAACTATCTAAGTGCTGGCATGAACACAGACGGTCATGCCTTAACTAGAATAACAGGGAACAAAAAACTTGTAAATATAACCAACAGCACTGGTGGACTAAGCGGTAGTATCAAGACAAATCCAAAAGGCAGCAAATGACAGCACTTCCAACAAACTGTCAATCATAACTTGCATTCAGAAACTTCAACAATTCATTGCGCTTGCTCTCTGCCTGCTTGTCTTCCTTGGATTTCTCAAGCTTCATCATTATCTTTTTACCAGAGATTGCACTCCTTTGAACACCTTCATCCTTGTCACGT-CAAGGAACTTGGAGAGCTGCACGGGGCCACTAGTACGTTCACTATTTTCTTCTGTGTAGAGCTCCCGCATTGAAGAGAACAAAACCAACCAATCAACCAACAAGCCAACCAGCAAGCCAATCCACCATGTTGTCACTCGTTCACGAATCCCAGCTCCAATGTCAAAGAGCCAA-CCCAGAAACAGGCAGCAAGATATATAAGGACCTCTTGTATTTAAATGTAAA-CCACATATATTTTAAGTCTACATATCTACTTCATAAGACATGACCCTGTAGATTTCTATTAATAGATATAGCATGGCACTGTAACAGCAATCAAACGCAAGTATGCAACCAACACTTGCTGATTTCTAGAGAGTGATTATTACATGCAACACAGATTCAATTCACTGAAAAGTTAAACCAAGAAAAAGGTATTTTCTGAATAAATAGGATTTTTACCTCTTTATGTTTGCTCTTGTCTCGTTTAGAATGCCTATCCTTGCTTCGCTCCCTCTCCCTAGACTTCCTTGATGATCTGCTCTTCTTGTGCTTGCGTGATTTGC]

[+] EMBL CF326991             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATTGAAAACATTATTCAGCCCAGGATCAAATGTAATAGTTTTTAATGACAACGGGGATGCGACAACTATTTAAGTGCTGGCATGAACACAAACGGGCATGCCTTAACTAAAATAACAGGGAACAAAAAACTTGTAAATATAACCAACAGCACTGGGGGACTAAGCGGGAGTATCAAAACAAATCCAAAAGGGAGCAAATGACAGCACTTCCAACAAACTGGCAATCATAACTTGCATTCAAAAACTTCAACAATTCATTGGGCTTGCTCTTTGCCTGCTTGGCTTCCTTGGATTTCTCAAGCTTCATCATTATCTTTTTACCAAAAATTGCACTCCTTTGAACACCTTTATCCTTGTCACGT TAAGGAACTTGGAAAACTGCACGGGGCCACTAATACGTTCACTATTTTTTTTTGTGTAAAACTCCCGCATTGAAAAAAACAAAACCAACCAATCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CF326990             [                       TTTTTTTTTTGAAAATTGAAAACATTA TCAGCCCAGGATCAAATGTAATAGTTTTTAGTGACAACGGTGATGCGACAACTATCTAAGTGCTGGCATGAACACAGACGGTCATGCCTTAACTAGAATAACAGGGAACAAAAAACTTGTAAATATAACCAACAGCACTGGTGGACTAAGCGGTAGTATCAAGACAAATCCAAAAGGCAGCAAATGACAGCACTTCCAACAAACTGTCAATCATAACTTGCATTCAGAAACTTCAACAATTCATTGCGCTTGCTCTCTGCCTGCTTGTCTTCCTTGGATTTCTCAAGCTTCATCATTATCTTTTTACCAGAGATTGCACTCCTTTGAACACCTTCATCCTTGTCACGT CAAGGAACTTGGAGAGCTGCACGGGGCCACTAGTACGTTCACTATTTTCTTCTGTGTAGAGCTCCCGCATTGAAGAGAACAAAACCAACCAATCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB672269             [                                                   TCAGCCCAGGCCTAAAAGGAATAGTTTTTAGTGACAACGGTGATGCGACAACTATCTAAGTGCTGGCATGAACACAGACGGTCCTGCCATAACTAGAATAACAGGGAACAAAAAACTTGTAAATATAACCAACAGCACTGGTGGACTAAGCGGTAGTATCAAGACAAATCCAAAAGGCAGCAAATGACAGCACTTCCAACAAACTGTCAATCATAACTTGCATTCAGAAACTTCAACAATTCATTGCGCTTGCTCTCTGCCTGCTTGTCTTCCTTGGATTTCTCAAGCTTCATCATTATCTTTTTACCAGAGATTGCACTCCTTTGAACACCTTCATCCTTGTCACGTCCAAGAAACTTGGAGAGCTGCACGGGGCCACTAGTACGTTCACTATTTTCTTCTGTGTAGAGCTCCCGCATTGAAGAGAACAAAACCAACCAATCAACCAACAAGCCAACCAGCAAGCCAATCCACCATGTTGTCACTCGTTCACGAATCCCAGCTCCAATGTCAAAGAGCCAA CCCAGAAACAGGCAGCAAGATATATAAGGACCTCTTGTATTTAAATGTAAA CCACATATATTTTAAGTCTACATATCTACTTCATAAGACATGACCCTGTAGATTTCTATTAATAGATATAGCATGGCACTGTAACAGCAATCAAACGCAAGTATGCAACCAACACTTGCTGATTTCTAGAGAGTGATTATTACATGCAACACAGATTCA                                                                                                                                                                 ]
[-] EMBL CF330364             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GAATCCCAGCTCCAATGTCAAAGAGCCAACCCCAGAAACAGGCGGCAAGATATATAAGGACCTCTTGTATTTAAATGTAAACCCACATATATTTTAAGTCTACATATCTACTTCATAAGACATGACCCTGTAGATTTCTATTAATAGATATAGCATGGCACTGTAACAGCAATCAAACGCAAGTATGCAACCAACACTTGCTGATTTCTAGAGAGTGATTATTACATGCAACACAGATTCGATTCACTGAAAAGTTAAACCAAGAAAAAGGTATTTTCTGAATAAATAGGATTTTTACCTCTTTATGTTTGCTCTTGTCTCGTTTAGAATGCCTATCCTTGCTTCGCTCCCTCTCCCTAGACTTCCTTGATGATCTGCTCTTCTTGTGCTTGCGTGATTTGC]




>consensus_7684#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAATTGAAAACATTATCAGCCCAGG
ATCAAATGTAATAGTTTTTAGTGACAACGGTGATGCGACAACTATCTAAGTGCTGGCATG
AACACAGACGGTCATGCCTTAACTAGAATAACAGGGAACAAAAAACTTGTAAATATAACC
AACAGCACTGGTGGACTAAGCGGTAGTATCAAGACAAATCCAAAAGGCAGCAAATGACAG
CACTTCCAACAAACTGTCAATCATAACTTGCATTCAGAAACTTCAACAATTCATTGCGCT
TGCTCTCTGCCTGCTTGTCTTCCTTGGATTTCTCAAGCTTCATCATTATCTTTTTACCAG
AGATTGCACTCCTTTGAACACCTTCATCCTTGTCACGTCAAGGAACTTGGAGAGCTGCAC
GGGGCCACTAGTACGTTCACTATTTTCTTCTGTGTAGAGCTCCCGCATTGAAGAGAACAA
AACCAACCAATCAACCAACAAGCCAACCAGCAAGCCAATCCACCATGTTGTCACTCGTTC
ACGAATCCCAGCTCCAATGTCAAAGAGCCAACCCAGAAACAGGCAGCAAGATATATAAGG
ACCTCTTGTATTTAAATGTAAACCACATATATTTTAAGTCTACATATCTACTTCATAAGA
CATGACCCTGTAGATTTCTATTAATAGATATAGCATGGCACTGTAACAGCAATCAAACGC
AAGTATGCAACCAACACTTGCTGATTTCTAGAGAGTGATTATTACATGCAACACAGATTC
AATTCACTGAAAAGTTAAACCAAGAAAAAGGTATTTTCTGAATAAATAGGATTTTTACCT
CTTTATGTTTGCTCTTGTCTCGTTTAGAATGCCTATCCTTGCTTCGCTCCCTCTCCCTAG
ACTTCCTTGATGATCTGCTCTTCTTGTGCTTGCGTGATTTGC

consensusID : consensus_7684#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence

                              [TTTTTTTTTTATCGGGAAACACAAAAATCCATATGCTACTAATAATATGAAAATCTGAAAACATTATCATCCCACGATCAAATGTAATACTTTTAAGTGACAACGGAGATGCCACAACTATCTAAGTGCTGGCTTGAACACAGACGGTCATGCGCTTTTTTTTTAATAACAAGGAACAAAGAACTTGTAAATATAACCAACTTTTTTTTTGGACTAAGCGGTACTATCAAGACAAATCCAAAAGGCAGCCAAATGACAGCACTTCCAACAAACTGTCAATCATAACTTGCATTCAAAAACTTCAACAATTCATTGCGCTAGCTCTCTGCCTGCTTGACTTCCTTGGATTTCTCAAGCTTCATCAT]

[+] EMBL CF330365             [TTTTTTTTTTATCGGGAAACACAAAAATCCATATGCTACTAATAATATGAAAATCTGAAAACATTATCATCCCACGATCAAATGTAATACTTTTAAGTGACAACGGAGATGCCACAACTATCTAAGTGCTGGCTTGAACACAGACGGTCATGCGCTTTTTTTTTAATAACAAGGAACAAAGAACTTGTAAATATAACCAACTTTTTTTTTGGACTAAGCGGTACTATCAAGACAAATCCAAAAGGCAGCCAAATGACAGCACTTCCAACAAACTGTCAATCATAACTTGCATTCAAAAACTTCAACAATTCATTGCGCTAGCTCTCTGCCTGCTTGACTTCCTTGGATTTCTCAAGCTTCATCAT]




>consensus_7684#1
TTTTTTTTTTATCGGGAAACACAAAAATCCATATGCTACTAATAATATGAAAATCTGAAA
ACATTATCATCCCACGATCAAATGTAATACTTTTAAGTGACAACGGAGATGCCACAACTA
TCTAAGTGCTGGCTTGAACACAGACGGTCATGCGCTTTTTTTTTAATAACAAGGAACAAA
GAACTTGTAAATATAACCAACTTTTTTTTTGGACTAAGCGGTACTATCAAGACAAATCCA
AAAGGCAGCCAAATGACAGCACTTCCAACAAACTGTCAATCATAACTTGCATTCAAAAAC
TTCAACAATTCATTGCGCTAGCTCTCTGCCTGCTTGACTTCCTTGGATTTCTCAAGCTTC
ATCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7684#0      TTTTTTTTTTTT---------------TTTTTTTTTTTTTTTTTTTTTGAAAAT-TGAAA 44
consensus_7684#1      TTTTTTTTTTATCGGGAAACACAAAAATCCATATGCTACTAATAATATGAAAATCTGAAA 60
                      ********** *               *   * *  *  *  *  * ******* *****

consensus_7684#0      ACATTATCAGCCCAGGATCAAATGTAATAGTTTTTAGTGACAACGGTGATGCGACAACTA 104
consensus_7684#1      ACATTATCATCCCACGATCAAATGTAATACTTTTAAGTGACAACGGAGATGCCACAACTA 120
                      ********* **** ************** **** *********** ***** *******

consensus_7684#0      TCTAAGTGCTGGCATGAACACAGACGGTCATGC--CTTAACTAGAATAACAGGGAACAAA 162
consensus_7684#1      TCTAAGTGCTGGCTTGAACACAGACGGTCATGCGCTTTTTTTTTAATAACAAGGAACAAA 180
                      ************* *******************   **   *  ******* ********

consensus_7684#0      AAACTTGTAAATATAACCAACAGCACTGGTGGACTAAGCGGTAGTATCAAGACAAATCCA 222
consensus_7684#1      GAACTTGTAAATATAACCAACTTTTTTTTTGGACTAAGCGGTACTATCAAGACAAATCCA 240
                       ********************     *  ************** ****************

consensus_7684#0      AAAGGCAGC-AAATGACAGCACTTCCAACAAACTGTCAATCATAACTTGCATTCAGAAAC 281
consensus_7684#1      AAAGGCAGCCAAATGACAGCACTTCCAACAAACTGTCAATCATAACTTGCATTCAAAAAC 300
                      ********* ********************************************* ****

consensus_7684#0      TTCAACAATTCATTGCGCTTGCTCTCTGCCTGCTTGTCTTCCTTGGATTTCTCAAGCTTC 341
consensus_7684#1      TTCAACAATTCATTGCGCTAGCTCTCTGCCTGCTTGACTTCCTTGGATTTCTCAAGCTTC 360
                      ******************* **************** ***********************

consensus_7684#0      ATCATTATCTTTTTACCAGAGATTGCACTCCTTTGAACACCTTCATCCTTGTCACGTCAA 401
consensus_7684#1      ATCAT------------------------------------------------------- 365
                      *****                                                       

consensus_7684#0      GGAACTTGGAGAGCTGCACGGGGCCACTAGTACGTTCACTATTTTCTTCTGTGTAGAGCT 461
consensus_7684#1      ------------------------------------------------------------
                                                                                  

consensus_7684#0      CCCGCATTGAAGAGAACAAAACCAACCAATCAACCAACAAGCCAACCAGCAAGCCAATCC 521
consensus_7684#1      ------------------------------------------------------------
                                                                                  

consensus_7684#0      ACCATGTTGTCACTCGTTCACGAATCCCAGCTCCAATGTCAAAGAGCCAACCCAGAAACA 581
consensus_7684#1      ------------------------------------------------------------
                                                                                  

consensus_7684#0      GGCAGCAAGATATATAAGGACCTCTTGTATTTAAATGTAAACCACATATATTTTAAGTCT 641
consensus_7684#1      ------------------------------------------------------------
                                                                                  

consensus_7684#0      ACATATCTACTTCATAAGACATGACCCTGTAGATTTCTATTAATAGATATAGCATGGCAC 701
consensus_7684#1      ------------------------------------------------------------
                                                                                  

consensus_7684#0      TGTAACAGCAATCAAACGCAAGTATGCAACCAACACTTGCTGATTTCTAGAGAGTGATTA 761
consensus_7684#1      ------------------------------------------------------------
                                                                                  

consensus_7684#0      TTACATGCAACACAGATTCAATTCACTGAAAAGTTAAACCAAGAAAAAGGTATTTTCTGA 821
consensus_7684#1      ------------------------------------------------------------
                                                                                  

consensus_7684#0      ATAAATAGGATTTTTACCTCTTTATGTTTGCTCTTGTCTCGTTTAGAATGCCTATCCTTG 881
consensus_7684#1      ------------------------------------------------------------
                                                                                  

consensus_7684#0      CTTCGCTCCCTCTCCCTAGACTTCCTTGATGATCTGCTCTTCTTGTGCTTGCGTGATTTG 941
consensus_7684#1      ------------------------------------------------------------
                                                                                  

consensus_7684#0      C 942
consensus_7684#1      -