cluster # 7693

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Oryza sativa
cluster # 7693 cluster # 7693 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7693#0 length = 821 sequences # 4

consensus_7693#1 length = 690 sequences # 1

consensusID : consensus_7693#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 821
fasta sequence

                              [TCATGCATCTTTATAGTTTCGATTAAACTCATTTCGACTAACAAAATTTGTACGTTCCAAACAAGATTTACATTTAC-AAAAAAAGATTTCCTACTTGCACTG-TCCATTGTAGCTTGAACATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAAGAAAAGAAAAGAAAATGCAGTACAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGTGGTCTTCATCATATAAGATTATACTGTGCAGCTCCCAGCATCAAGATGGAATTTACAGCAGCAGTGCATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAGAAGACGAGGTTGGTGAATGCTGACTTGCCAAACCGCACCTTCTTCCATCTAGTCTTGAAGAGGAAAGGATGAAGACCCAATATATGCTCAGGCATGAAGTCGTGCCTTGTCAGTATGCCTACAACAGGCGCTCTCTTAGACGATTTTGGTAGAACCAAAAGATGCCTCAATCCAACTTCGCGGAAAAGCACATGGGCCTTAGCCAAAGACATAGTCTCGACCACAGTGTAAGGAGACGTGTTTGTGAACGGATGCAAATCTACGAACATTTCCAGTTCTTCTGCACTGAATTCTATTTCCTCTATTCTGTCATGCTTTCCTGAGCCAGGTTTAGCAAAATCATGAGGCAAGAATTGCTTGGAAGCATCCAGTGCTGAAGCTGAGCAGTTAGGAATGAAATCTTTCTTTCTCAGCAGAACAAGCAAGT-GGGCTCTAAGAACTAGACCAAATAAGACAGGAGAATCTGAAAATGGTGGCTCATCAA]

[+] EMBL CB629203             [TCATGCATCTTTATAGTTTCGATTAAACTCATTTCGACTAACAAAATTTGTACGTTCCAAACAAGATTTACATTTACAAAAAAAAGATTTCCTACTTGCACTGTTCCATTGTAGCTTGAACATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAAGAAAAGAAAAGAAAATGCAGTAGAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGTGGTCTTCATCATATAAGATTATACTGTGCAGCTCCCAGCATCAAGATGGAATTTACAGCAGCAGTGCATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAGAAGACGAGGTTGGTGAATGCTGACTTGCCAAACCGCACCTTCTTCCATCTAGTCTTGAAGAGGAAAGGATGAAGACCCAATATATGCTCAGGCATGAAGTCGTGCCTTGTCAGTATGCCTACAACAGGCGCTCTCTTAGACGATTTCGGTAGAACCAAAAGATGCCTCAATCCAACTTCGCGGAAAAGCACATGGGCCTTAGCCAAAGACATAGTCTCGACCACAGTGTAAGGAGACGTGTTTGTGAACGGATGCAAATCTACGAACATTTCCAGTTCTTCTGCACTGAATTGTATTTCCTCTATTCTGTCATGCTTTCCTGAGCCAGGTTTAGCAAAATCATGAGGCAAGAATTGCTTGGAAGCATCCAGTGCTGAAGCTGAGCAGTTAGGAATGAAATCTTTCTTTCTCAGCAGAACAAGCAAGT GGGCTCTAAGAACTAGACCAAATAAGACAGGAGAATCTGAAAATGGTGGCTCATCAA]
[+] EMBL CB673647             [             TAGTTTCGATTAAACTCATCTCGACTAACAAAATTTGTACGTTCCAAACAAGATTTACATTTAC AAAAAAAGATTTCCTACTTGCACTG TCCATTGTAGCTTGAACATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAAGAAAAGAAAAGAAAATGCAGTACAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGTGGTCTTCATCATATAAGATTATACTGTGCAGCTCCCAGCATCAAGATGGAATTTACAGCAGCAGTGCATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAGAAGACGAGGTTGGTGAATGCTGACTTGCCAAACCGCACCTTCTTCCATCTAGTCTTGAAGAGGAAAGGATGAAGACCCAATATATGCTCAGGCATGAAGTCGTGCCTTGTCAGTATGCCTACAACAGGCGCTCTCTTAGACGATTTTGGTAGAACCAAAAGATGCCTCAATCCAACTTCGCGGAAAAGCACATGGGCCTTAGCCAAAGACATAGTCTCGACCACAGTGTAAGGAGACGTGTTTGTGAACGGATGCAAATCTACGAACATTTCCAGTTCTTCTGCACTGAATTCTATTTCCTCTATTCTGTCATGCTTTCCTGAGCCAGGTTTAGCAAAATCATGAGGCAAGAATTGCTTGGAAGCATCCAGTGCTGAAACTGAGCAGTTAGGAATGAA                                                                                       ]
[+] EMBL CB670274             [                                 nCGACTAACAAAATTTGTACCCTTTAAAGAAGATTTACATTTAC AAAAAAAGATTTCCTACTTGCACTG TCCATTGTAGCTTGAACATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAAGAAAAGAAAAGAAAATGCAGTACAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGTGGTCTTCATCATATAAGATTATACTGTGCAGCTCCCAGCATCAAGATGGAATTTACAGCAGCAGTGCATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAAAAGACGAGGTTGGTGAATGCTGACTTGCCAAACCGCACCTTCTTCCATCTAGTCTTGAAGAGGAAAGGATGAAGACCCAATATATGCTCAGGCATGAAGTCGTGCCTTGTCAGTATGCCTACAACAGGCGCTCTCTTAGACGATTTTGGTAGAACCAAAAGATGCCTCAATCCAACTTCGCGGAAAAGCACATGGGCCTTAGCCAAAGACATAGTCTCGACCACAGTGTAAGGAGACGTGTTTGTGAACGGATGCAAATCTACGAACATTTCCAGTTCTTCTGCACTGAATTCTATTTCCTCTATTCTGTCATGCTTTCCTGAGCCAGGTTTAGCAAAATCATGAGGCAAGAATTGCTTGGAAGCATCCAGTGCTGAAGCTGAGCAGTTAGGAATGAAATCTTTCTTTCTCAGCAGAACAAGCAAGTGGGGCTCTAAGAACTAGACC                                      ]
[+] EMBL CB677854             [                                                                        TTTAC AAAAAAAGACCCCTTAATTGCACTG TCCATTGTAGCTTGAACATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAACAAAAGAAAAGAAAATGCAGTACAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGTGGTCTTCATCATATAAGATTATACTGTGCAGCTCCCAGCATCAAGATGGAATTTACAGCAGCAGTGCATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAGAAGACGAGGTTGGTGAATGCTGACTTGCCAAACCGCACCTTCTTCCATCTACTCTTGAAGAGGAAAGGATGAACACCCAATATATGCTCAGGCATGAAGTCGTGCCTTGTCAGTATGCCCACAACAGGCGCTCTCTTATACGATTTTGGTAGAACCAAAAGATGCCTCAATCCAtc                                                                                                                                                                                                                                                                                                                     ]




>consensus_7693#0
TCATGCATCTTTATAGTTTCGATTAAACTCATTTCGACTAACAAAATTTGTACGTTCCAA
ACAAGATTTACATTTACAAAAAAAGATTTCCTACTTGCACTGTCCATTGTAGCTTGAACA
TTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAAGAAAAGAAAAGAAAATGCA
GTACAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGTGGTCTTCA
TCATATAAGATTATACTGTGCAGCTCCCAGCATCAAGATGGAATTTACAGCAGCAGTGCA
TCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAGAAGACGAGGTTGGTGAATGCTGA
CTTGCCAAACCGCACCTTCTTCCATCTAGTCTTGAAGAGGAAAGGATGAAGACCCAATAT
ATGCTCAGGCATGAAGTCGTGCCTTGTCAGTATGCCTACAACAGGCGCTCTCTTAGACGA
TTTTGGTAGAACCAAAAGATGCCTCAATCCAACTTCGCGGAAAAGCACATGGGCCTTAGC
CAAAGACATAGTCTCGACCACAGTGTAAGGAGACGTGTTTGTGAACGGATGCAAATCTAC
GAACATTTCCAGTTCTTCTGCACTGAATTCTATTTCCTCTATTCTGTCATGCTTTCCTGA
GCCAGGTTTAGCAAAATCATGAGGCAAGAATTGCTTGGAAGCATCCAGTGCTGAAGCTGA
GCAGTTAGGAATGAAATCTTTCTTTCTCAGCAGAACAAGCAAGTGGGCTCTAAGAACTAG
ACCAAATAAGACAGGAGAATCTGAAAATGGTGGCTCATCAA

consensusID : consensus_7693#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence

                              [TTTTTTTTTTTTTTTTACAAAAAAAGATTTCCTACTTGCACTGTTCCATTGTAGCTTGAACATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAAGAAAAGAAAAGAAAATGCAGTAGAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGGGGTCTTCATCATATAAGATTATACTGGGCAGCTCCCAGCATCAAGATGGAATTTGCAGCAGCAGTGCATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAAAAGACGAGGTTGGTGAATGCTGACTTGCCAAACCGCACCTTCTTCCATCTAGTCTTGAAGAGGAAAGGATGAAGACCCAATACATGCTCAGGCATGAGGTCGTGCCTTGTCAGTATGCCTACAACAGGCGCTCTCTTAGACGATTTCGGTAGAACCAAAAGATGCCTCAATCCAACTTCGCGGAAAAGCACATGGGCCTTAGCCAAAGACATAGTCTCGACCACAGTGTAAGGAGACGTGTTTGTGAACGGATGCAAATCTACGAACATTTCCAGTTCTTCTGCACTGAATTGAATTTCCTCTATTCTGGCATGCTTTCCTGAGCCAGGTTTAGCAAAATCATGAGGCAAGAATTGCTTGGAAACATCCANGGCTGAAACTGAACAGCTAGGAAATGAAATTTTTTTTTTC]

[+] EMBL CA762406             [TTTTTTTTTTTTTTTTACAAAAAAAGATTTCCTACTTGCACTGTTCCATTGTAGCTTGAACATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAAGAAAAGAAAAGAAAATGCAGTAGAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGGGGTCTTCATCATATAAGATTATACTGGGCAGCTCCCAGCATCAAGATGGAATTTGCAGCAGCAGTGCATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAAAAGACGAGGTTGGTGAATGCTGACTTGCCAAACCGCACCTTCTTCCATCTAGTCTTGAAGAGGAAAGGATGAAGACCCAATACATGCTCAGGCATGAGGTCGTGCCTTGTCAGTATGCCTACAACAGGCGCTCTCTTAGACGATTTCGGTAGAACCAAAAGATGCCTCAATCCAACTTCGCGGAAAAGCACATGGGCCTTAGCCAAAGACATAGTCTCGACCACAGTGTAAGGAGACGTGTTTGTGAACGGATGCAAATCTACGAACATTTCCAGTTCTTCTGCACTGAATTGAATTTCCTCTATTCTGGCATGCTTTCCTGAGCCAGGTTTAGCAAAATCATGAGGCAAGAATTGCTTGGAAACATCCANGGCTGAAACTGAACAGCTAGGAAATGAAATTTTTTTTTTC]




>consensus_7693#1
TTTTTTTTTTTTTTTTACAAAAAAAGATTTCCTACTTGCACTGTTCCATTGTAGCTTGAA
CATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAAGAAAAGAAAAGAAAATG
CAGTAGAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGGGGTCTT
CATCATATAAGATTATACTGGGCAGCTCCCAGCATCAAGATGGAATTTGCAGCAGCAGTG
CATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAAAAGACGAGGTTGGTGAATGCT
GACTTGCCAAACCGCACCTTCTTCCATCTAGTCTTGAAGAGGAAAGGATGAAGACCCAAT
ACATGCTCAGGCATGAGGTCGTGCCTTGTCAGTATGCCTACAACAGGCGCTCTCTTAGAC
GATTTCGGTAGAACCAAAAGATGCCTCAATCCAACTTCGCGGAAAAGCACATGGGCCTTA
GCCAAAGACATAGTCTCGACCACAGTGTAAGGAGACGTGTTTGTGAACGGATGCAAATCT
ACGAACATTTCCAGTTCTTCTGCACTGAATTGAATTTCCTCTATTCTGGCATGCTTTCCT
GAGCCAGGTTTAGCAAAATCATGAGGCAAGAATTGCTTGGAAACATCCANGGCTGAAACT
GAACAGCTAGGAAATGAAATTTTTTTTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7693#0      TCATGCATCTTTATAGTTTCGATTAAACTCATTTCGACTAACAAAATTTGTACGTTCCAA 60
consensus_7693#1      -----------------------------------------------------------T 1
                                                                                  

consensus_7693#0      ACAAGATTTACATTTACAAAAAAAGATTTCCTACTTGCACTGT-CCATTGTAGCTTGAAC 119
consensus_7693#1      TTTTTTTTTTTTTTTACAAAAAAAGATTTCCTACTTGCACTGTTCCATTGTAGCTTGAAC 61
                            ***   ******************************* ****************

consensus_7693#0      ATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAAGAAAAGAAAAGAAAATGC 179
consensus_7693#1      ATTCTGAATATGGTACCACTCGGTACAATCGTAACAAAAAAAGAAAAGAAAAGAAAATGC 121
                      ************************************************************

consensus_7693#0      AGTACAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGTGGTCTTC 239
consensus_7693#1      AGTAGAATTAGCTGCTAGATTCCCAGGCTGGAGAATCTACTACATTTTTTTGGGGTCTTC 181
                      **** *********************************************** *******

consensus_7693#0      ATCATATAAGATTATACTGTGCAGCTCCCAGCATCAAGATGGAATTTACAGCAGCAGTGC 299
consensus_7693#1      ATCATATAAGATTATACTGGGCAGCTCCCAGCATCAAGATGGAATTTGCAGCAGCAGTGC 241
                      ******************* *************************** ************

consensus_7693#0      ATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAGAAGACGAGGTTGGTGAATGCTG 359
consensus_7693#1      ATCCTTGAGCAAACTCATCAGTTACTAGCGAGCGTCAAAAGACGAGGTTGGTGAATGCTG 301
                      ************************************* **********************

consensus_7693#0      ACTTGCCAAACCGCACCTTCTTCCATCTAGTCTTGAAGAGGAAAGGATGAAGACCCAATA 419
consensus_7693#1      ACTTGCCAAACCGCACCTTCTTCCATCTAGTCTTGAAGAGGAAAGGATGAAGACCCAATA 361
                      ************************************************************

consensus_7693#0      TATGCTCAGGCATGAAGTCGTGCCTTGTCAGTATGCCTACAACAGGCGCTCTCTTAGACG 479
consensus_7693#1      CATGCTCAGGCATGAGGTCGTGCCTTGTCAGTATGCCTACAACAGGCGCTCTCTTAGACG 421
                       ************** ********************************************

consensus_7693#0      ATTTTGGTAGAACCAAAAGATGCCTCAATCCAACTTCGCGGAAAAGCACATGGGCCTTAG 539
consensus_7693#1      ATTTCGGTAGAACCAAAAGATGCCTCAATCCAACTTCGCGGAAAAGCACATGGGCCTTAG 481
                      **** *******************************************************

consensus_7693#0      CCAAAGACATAGTCTCGACCACAGTGTAAGGAGACGTGTTTGTGAACGGATGCAAATCTA 599
consensus_7693#1      CCAAAGACATAGTCTCGACCACAGTGTAAGGAGACGTGTTTGTGAACGGATGCAAATCTA 541
                      ************************************************************

consensus_7693#0      CGAACATTTCCAGTTCTTCTGCACTGAATTCTATTTCCTCTATTCTGTCATGCTTTCCTG 659
consensus_7693#1      CGAACATTTCCAGTTCTTCTGCACTGAATTGAATTTCCTCTATTCTGGCATGCTTTCCTG 601
                      ******************************  *************** ************

consensus_7693#0      AGCCAGGTTTAGCAAAATCATGAGGCAAGAATTGCTTGGAAGCATCCAGTGCTGAAGCTG 719
consensus_7693#1      AGCCAGGTTTAGCAAAATCATGAGGCAAGAATTGCTTGGAAACATCCANGGCTGAAACTG 661
                      ***************************************** ******  ****** ***

consensus_7693#0      AGCAGTTAGGAA-TGAAATCTTTCTTTCTCAGCAGAACAAGCAAGTGGGCTCTAAGAACT 778
consensus_7693#1      AACAGCTAGGAAATGAAATTTTTTTTTTC------------------------------- 690
                      * *** ****** ****** *** ***                                 

consensus_7693#0      AGACCAAATAAGACAGGAGAATCTGAAAATGGTGGCTCATCAA 821
consensus_7693#1      -------------------------------------------