cluster # 7694

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Oryza sativa
cluster # 7694 cluster # 7694 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7694#0 length = 943 sequences # 2

consensus_7694#1 length = 785 sequences # 3

consensusID : consensus_7694#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 943
fasta sequence

                              [CCAAAGCGAAGAAAGAGCGCGTCCGCGTCGTCGTCGTCGTCCGCCTGCCTGCCTGCCTACCCACGTCGCGCTCGCGTGCGCGCTGCCGCTTAGTCGCGCCAAAAAGGCGGGGGGAGGGGAGGCGCGTGCCTGCCCCCGATCGCATATCGCATTCTCCACTCGCTTGCGTTTGCCGTTGCGTTTGCGTTTTGCGTAGCAAGGGAAGGGAGAGAGCTCGTGCTTTTGGATTGGCCGCGATGAGCTGCGGGGGCGCCGGGCAAGCCGCCGAGGGCCGACAAGGTCTCCATCCTGAGCGACGCCGCCCGTCTCCTGAGCCAGCTGCGCGCCGAGGCCCAGAAGCTCAAGAGCTCGAACGAGTCGCTCCAGGACTCCATCAAGAGCCTCAAGGCCGAGAAGTCGGAGCTGCGTGACGAGAAGACGAGGCTCAAGGCCGAGAGGGAGAGGCTGGAGCAAATGCTCAAGGGCGTCGGCGCCGCCACACCGGCGGCTCCAGCGCCGTTCGTCCCGCACCACGCCGCGGCGGTGGCGGCCGCACCGGCGTACCATCCGGCGGCGTTCGCGCAGGCCGGCGGCAAGTACGTGCCGTACGCCACCAGCTACGCGCCGCCGGCCGCGTTCTGGCAGTGGATACCGCCGACGTCCCTCGACACGTCCAAGGACCCCGTGATGTGGCCGCCGGTTGCATGATCAGCTGCTGCTGTCACCGAAAATGCCGTAGAAATTGACCAAAGAGCACCTGATGAAAGCCTCGGGTGCAGTTATGTGATTGTGTTGTGGATAAATGATCAAGGATCAAGGGATCACCAGAAGAAATTTCCTGGTGATCATTGCTCGCCGGAGCAGTCTATGTAACAACCCAATTGCTAAAGTAATTAAGGCAATTATTATTACATCAAGATGGTGTTTATGTAAAACGTAAAAAAAAACCTCGTCCGAATTCGGC]

[+] EMBL AK063498             [CCAAAGCGAAGAAAGAGCGCGTCCGCGTCGTCGTCGTCGTCCGCCTGCCTGCCTGCCTACCCACGTCGCGCTCGCGTGCGCGCTGCCGCTTAGTCGCGCCAAAAAGGCGGGGGGAGGGGAGGCGCGTGCCTGCCCCCGATCGCATATCGCATTCTCCACTCGCTTGCGTTTGCCGTTGCGTTTGCGTTTTGCGTAGCAAGGGAAGGGAGAGAGCTCGTGCTTTTGGATTGGCCGCGATGAGCTGCGGGGGCGCCGGGCAAGCCGCCGAGGGCCGACAAGGTCTCCATCCTGAGCGACGCCGCCCGTCTCCTGAGCCAGCTGCGCGCCGAGGCCCAGAAGCTCAAGAGCTCGAACGAGTCGCTCCAGGACTCCATCAAGAGCCTCAAGGCCGAGAAGTCGGAGCTGCGTGACGAGAAGACGAGGCTCAAGGCCGAGAGGGAGAGGCTGGAGCAAATGCTCAAGGGCGTCGGCGCCGCCACACCGGCGGCTCCAGCGCCGTTCGTCCCGCACCACGCCGCGGCGGTGGCGGCCGCACCGGCGTACCATCCGGCGGCGTTCGCGCAGGCCGGCGGCAAGTACGTGCCGTACGCCACCAGCTACGCGCCGCCGGCCGCGTTCTGGCAGTGGATACCGCCGACGTCCCTCGACACGTCCAAGGACCCCGTGATGTGGCCGCCGGTTGCATGATCAGCTGCTGCTGTCACCGAAAATGCCGTAGAAATTGACCAAAGAGCACCTGATGAAAGCCTCGGGTGCAGTTATGTGATTGTGTTGTGGATAAATGATCAAGGATCAAGGGATCACCAGAAGAAATTTCCTGGTGATCATTGCTCGCCGGAGCAGTCTATGTAACAACCCAATTGCTAAAGTAATTAAGGCAATTA                                                           ]
[+] EMBL CF326700             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGGCGTACCATCCGGCGGCGTTCGCGCATTTCGGCGGCAAGTACGTGCCGTACGCCACCAGCTACGCGCCGCCGGCCGCGTTCTGGCAGTGGATACCGCCGACGTCCCTCGACACGTCCAAGGACCCCGTGATGTGGCCGCCGGTTGCATGATCAGCTGCTGCTGTCACCGAAAATGCCGTTTAAATTGACCAAAGAGCACCTGATGAAAGCCTCGGGTGCAGTTATGTGATTGTGTTGTGGATAAATGATCAAGGATCAAGGGATCACCAGAAGAAATTTCCTGGTGATCATTGCTCGCCGGAGCAGTCTATGTAACAACCCAATTGCTAAAGTAATTAAGGCAATTATTATTACATCAAGATGGTGTTTATGTAAAACGTAAAAAAAAACCTCGTCCGAATTCGGC]




>consensus_7694#0
CCAAAGCGAAGAAAGAGCGCGTCCGCGTCGTCGTCGTCGTCCGCCTGCCTGCCTGCCTAC
CCACGTCGCGCTCGCGTGCGCGCTGCCGCTTAGTCGCGCCAAAAAGGCGGGGGGAGGGGA
GGCGCGTGCCTGCCCCCGATCGCATATCGCATTCTCCACTCGCTTGCGTTTGCCGTTGCG
TTTGCGTTTTGCGTAGCAAGGGAAGGGAGAGAGCTCGTGCTTTTGGATTGGCCGCGATGA
GCTGCGGGGGCGCCGGGCAAGCCGCCGAGGGCCGACAAGGTCTCCATCCTGAGCGACGCC
GCCCGTCTCCTGAGCCAGCTGCGCGCCGAGGCCCAGAAGCTCAAGAGCTCGAACGAGTCG
CTCCAGGACTCCATCAAGAGCCTCAAGGCCGAGAAGTCGGAGCTGCGTGACGAGAAGACG
AGGCTCAAGGCCGAGAGGGAGAGGCTGGAGCAAATGCTCAAGGGCGTCGGCGCCGCCACA
CCGGCGGCTCCAGCGCCGTTCGTCCCGCACCACGCCGCGGCGGTGGCGGCCGCACCGGCG
TACCATCCGGCGGCGTTCGCGCAGGCCGGCGGCAAGTACGTGCCGTACGCCACCAGCTAC
GCGCCGCCGGCCGCGTTCTGGCAGTGGATACCGCCGACGTCCCTCGACACGTCCAAGGAC
CCCGTGATGTGGCCGCCGGTTGCATGATCAGCTGCTGCTGTCACCGAAAATGCCGTAGAA
ATTGACCAAAGAGCACCTGATGAAAGCCTCGGGTGCAGTTATGTGATTGTGTTGTGGATA
AATGATCAAGGATCAAGGGATCACCAGAAGAAATTTCCTGGTGATCATTGCTCGCCGGAG
CAGTCTATGTAACAACCCAATTGCTAAAGTAATTAAGGCAATTATTATTACATCAAGATG
GTGTTTATGTAAAACGTAAAAAAAAACCTCGTCCGAATTCGGC

consensusID : consensus_7694#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 785
fasta sequence

                              [AAGAGCGCGTCCGCGTCGTCGTCGTCGTCCGCCTGCCTGCCTGCCTACCCACGTCGCGCTCGCGTGCGCGCTGCCGCTTAGTCGCGCCAAAAAGGCGGGGGGAGGGGAGGCGCGTGCCTGCCCCCGATCGCATATCGCATTCTCCACTCGCTTGCGTTTGCCGTTGCGTTTGCGTTTTGCGTAGNAAGNG-GAAGGGAGAGAGCTCGTGCTTTTGGATTGGCCGCGATGAGCTGCGGGGGCGCCGGGCAGAGCGGGTGGCTGCTCGAGTACGGGCTGGTGGAGGAGGAGATCCAGGGCTCCGAC-TTCATCTACATGGTCGACGACCCCGCGGCCGTCTCCAGCGTGCTACTGGGCTTCGACGTTCCCAGGAAGGAGGACGGCAGCGGCGGCCAGGACAACTCTGCCTCCAAGAAAAGATCTCGTCCAGAATCGAGCGCACCGCCGGGCACCAAGGCTTGCCGCGAAAAGCTCCGGCGAGACAGGCTCAATGAAAGGTTCAACGAGCTCAGCGCGATCTTGGAGCCCGGCAAGCCGCCGAGGGCCGACAAGGTCTCCATCCTGAGCGACGCCGCCCGTCTCCTGAGCCAGCTGCGCGCCGAGGCCCAGAAGCTCAAGAGCTCGAACGAGTCGCTCCAGGACTCCATCAAGAGCCTCAAGGCCGAGAAGTCGGAGCTGCGTGACGAGAAGACGAGGCTCAAGGCCGAGAGGGAGAGGCTGGAGCAAATGCTCAAGGGCGTCGGCGCCGCCACACCGGCGGCTCCAGCGCCGTTCGTCCCGCACCACGC]

[+] EMBL OSS11183A            [AAGAGCGCGTCCGCGTCGTCGTCGTCGTCCGCCTGCCTGCCTGCCTACCCACGTCGCGCTCGCGTGCGCGCTGCCGCTTAGTCGCGCCAAAAAGGCGGGGGGAGGGGAGGCGCGTGCCTGCCCCCGATCGCATATCGCATTCTCCACTCGCTTGCGTTTGCCGTTGCGTTTGCGTTTTGCGTA NAAGNG GAAGGGAGAGAGCTCGTGCTTTTGGATTGGCCGCGATGAGCTNCGGGGGCGCCGGGCAGAGCGGGTGGCTGCTCGAGTACGGGCTGGTGGAGGAGGAGATCCAGGGCTCCGAC TTCATCTACATGGTCGACGACCCCGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU093287             [                                                                                                                                                                                   CGTAGCAAG G GAA GGAGAGAGCTCGTGCTTTTGGATTGCCCGCGATGAGCTGCGGGGGCGCCGGGCAGAGCGGGTGGCTGCTCGAGTACGGGCTGGTGAAGAAGGAGATCCAGGGCTCCGACTTTCATCTACATGGTCGACGACCCCGCGGCCGTCTCCAGCGTGCTACTGGGCTTCGACGTTCCCAGGAAGGAGGACGGCAGCGGCGGCCAGGACAACTCTGCCTCCAAGAAAAGATCTCGTCCAGAATCGAGCGCACCGCCGGGCACCAAGGCTTGCCGCGAAAAGCTCCGGCGAGACAGGCTCAATGAAAGGTTCAACGAGCTCAGCGCGATCTTGGAGCCCGGCAAGCCGCCGAGGGCCGACAAGGTCTCCATCCTGAGCGACGCCGCCCGTCTCCTGAGCCAGCTGCGCGCCGAGGCCCAGAAGCTCAAGAGCTCGAACGAGTCGCTCCAGGACTCCATCAAGAGCCTCAAGGCCGAGAAGTCGGAGCTGCGTGACGAGAAGACGAGGCTCAAGGCCGAGAGGGAGAGGCTGGAGCAAATGCTCAAGGGCGTCGGCGCCGCCACACCGGCGGCTCCAGCGCCGTTCGTCCCGCACCACGC]
[+] EMBL AU063157             [                                                                                                                                                                                     cntagAGNGNGAAGGGAGAGAGCTCGTGCTTTTGGATTNGCCGCGATNAGCTGCGGGGGCGCCGGGCAGAGCGGGTNGCTGCTCGAGTACGGGCTGGTGGAGGAGGAGATCCAGGGCTCCGAC TTCATCTACATNGTCGACNACCCCNCGGCCGTCTCCAGCGTGCTACTNGGCTTCGACGTTCCCAGGAAGGAGGACGGCAGCGGCNGCCAGGACAACTCTNCCTCCAAGAAAAGATCTCGTNCAGAATCGAGCGCACCGCNGGc                                                                                                                                                                                                                                                                                                                                                   ]




>consensus_7694#1
AAGAGCGCGTCCGCGTCGTCGTCGTCGTCCGCCTGCCTGCCTGCCTACCCACGTCGCGCT
CGCGTGCGCGCTGCCGCTTAGTCGCGCCAAAAAGGCGGGGGGAGGGGAGGCGCGTGCCTG
CCCCCGATCGCATATCGCATTCTCCACTCGCTTGCGTTTGCCGTTGCGTTTGCGTTTTGC
GTAGNAAGNGGAAGGGAGAGAGCTCGTGCTTTTGGATTGGCCGCGATGAGCTGCGGGGGC
GCCGGGCAGAGCGGGTGGCTGCTCGAGTACGGGCTGGTGGAGGAGGAGATCCAGGGCTCC
GACTTCATCTACATGGTCGACGACCCCGCGGCCGTCTCCAGCGTGCTACTGGGCTTCGAC
GTTCCCAGGAAGGAGGACGGCAGCGGCGGCCAGGACAACTCTGCCTCCAAGAAAAGATCT
CGTCCAGAATCGAGCGCACCGCCGGGCACCAAGGCTTGCCGCGAAAAGCTCCGGCGAGAC
AGGCTCAATGAAAGGTTCAACGAGCTCAGCGCGATCTTGGAGCCCGGCAAGCCGCCGAGG
GCCGACAAGGTCTCCATCCTGAGCGACGCCGCCCGTCTCCTGAGCCAGCTGCGCGCCGAG
GCCCAGAAGCTCAAGAGCTCGAACGAGTCGCTCCAGGACTCCATCAAGAGCCTCAAGGCC
GAGAAGTCGGAGCTGCGTGACGAGAAGACGAGGCTCAAGGCCGAGAGGGAGAGGCTGGAG
CAAATGCTCAAGGGCGTCGGCGCCGCCACACCGGCGGCTCCAGCGCCGTTCGTCCCGCAC
CACGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7694#0      CCAAAGCGAAGAAAGAGCGCGTCCGCGTCGTCGTCGTCGTCCGCCTGCCTGCCTGCCTAC 60
consensus_7694#1      ------------AAGAGCGCGTCCGCGTCGTCGTCGTCGTCCGCCTGCCTGCCTGCCTAC 48
                                  ************************************************

consensus_7694#0      CCACGTCGCGCTCGCGTGCGCGCTGCCGCTTAGTCGCGCCAAAAAGGCGGGGGGAGGGGA 120
consensus_7694#1      CCACGTCGCGCTCGCGTGCGCGCTGCCGCTTAGTCGCGCCAAAAAGGCGGGGGGAGGGGA 108
                      ************************************************************

consensus_7694#0      GGCGCGTGCCTGCCCCCGATCGCATATCGCATTCTCCACTCGCTTGCGTTTGCCGTTGCG 180
consensus_7694#1      GGCGCGTGCCTGCCCCCGATCGCATATCGCATTCTCCACTCGCTTGCGTTTGCCGTTGCG 168
                      ************************************************************

consensus_7694#0      TTTGCGTTTTGCGTAGCAAGGG-AAGGGAGAGAGCTCGTGCTTTTGGATTGGCCGCGATG 239
consensus_7694#1      TTTGCGTTTTGCGTAGNAAGNGGAAGGGAGAGAGCTCGTGCTTTTGGATTGGCCGCGATG 228
                      **************** *** * *************************************

consensus_7694#0      AGCTGCGGGGGCGCCGGGCAAGCCGCCGAGGGCCGACAAGGTCTCCATCCTGAGCGACGC 299
consensus_7694#1      AGCTGCGGGGGCGCCGGGCAGAGCG--GGTGGCTGCTCGAGTA--CGGGCTG-GTGGAGG 283
                      ********************   **  *  *** *     **   *   *** * *  * 

consensus_7694#0      CGCCCGTCTCCTGAGCCAGCTGCGCGC-CGAGGCCCAGAAGCTCAAGAGCTCGAACGAGT 358
consensus_7694#1      AGGAGATCCAGGGCTCCGACTTCATCTACATGGTCGACGACCCCGCGGCCGTCTCCAGCG 343
                       *    **    *  **  ** *     *  ** * *  * * *  *  *     *    

consensus_7694#0      CGCTCCAGGACTCCATCAAGAGCCTCAAGGCCGAGAAGTCGGAGCTGCGTGACGAGAAGA 418
consensus_7694#1      TGCTACTGGGCTTCGAC----GTTCCCAGGAAGGAGGACGGCAGCGGCG----GCCAGGA 395
                       *** * ** ** *  *    *   * ***  *       * *** ***    *  * **

consensus_7694#0      CGAGGCTCAAGGCCGAGAGGGAGAGGCTGGAGCAAATGCTCAAGGGCGTCGGCGCCGCCA 478
consensus_7694#1      CAACTCT---GCCTCCAAGAAAAGATCTCGTCCAGA--ATCGAGCGCACCGCCGG-GCAC 449
                      * *  **   * *    **  *    ** *  ** *   ** ** **  ** **  **  

consensus_7694#0      CACCGGCGGCTCCAGCGCCGTTCGTCCCGCACCACGCCGCGGCGGTGGCGGCCGCACCGG 538
consensus_7694#1      CAAGGCTTGCCGCGAAAAGCTCCGGCGAGACAGGCTCAATGAAAGGTTCAACGAGCTCAG 509
                      **  *   **  *       * ** *  *     * *   *   *   *  *     * *

consensus_7694#0      CGTACCATCCGGCGGCGTTCGCGCAGGCCGGCGGCAAGTACGTGCCGTACGCCACCAGCT 598
consensus_7694#1      CGCG--ATCT--TGGAGCCCG-GCAAGCCGCCG--AGGGCCGACAAGGTCTCCATC--CT 560
                      **    ***    ** *  ** *** **** **  * *  **    *  * *** *  **

consensus_7694#0      ACGCGCCGCCGGCCGCGTTCTGGCAGTGGATAC-CGCCGACGTCCCTCGACACGTCCAAG 657
consensus_7694#1      GAGCGACGCCGCCCGTCTCCTGA-GCCAGCTGCGCGCCGAGGCCC----AGAAGCTCAAG 615
                        *** ***** ***  * ***      * * * ****** * **    * * *  ****

consensus_7694#0      GACCCCGTGATGTGGCCGCCGGTTGCATGATCAGCTGCTGCTGTCACCGAAAATGCCGTA 717
consensus_7694#1      AGCTCGAACGAGTCGCTCCAGG--ACTCCATCAAGAGCC-TCAAGGCCGAGAA----GTC 668
                        * *      ** **  * **   *   ****   **        **** **    ** 

consensus_7694#0      GAAATTGACCAAAGAGCACCTGATGAAAGCCTCGGGTGCAGTTATGTGATTGTGTTGTGG 777
consensus_7694#1      GGAGCTGCGTGACGAGAA---GACGAGGCTCAAGGCCGAGAGGGAGAGGCTG------GA 719
                      * *  **    * *** *   ** **    *  **  *       * *  **      * 

consensus_7694#0      ATAAATGATCAAGGATCAAGGGATCACCAGAAGAAATTTCCTGGTGATCATTGCTCGCCG 837
consensus_7694#1      GCAAATGCTCAAGGGCGTCGGCGCCGCCACACCGGCGGCTCCAGCG-CCGTTCGTC-CCG 777
                        ***** ******     **   * *** *         *  * *  * **  ** ***

consensus_7694#0      GAGCAGTCTATGTAACAACCCAATTGCTAAAGTAATTAAGGCAATTATTATTACATCAAG 897
consensus_7694#1      CACCACGC---------------------------------------------------- 785
                       * **  *                                                    

consensus_7694#0      ATGGTGTTTATGTAAAACGTAAAAAAAAACCTCGTCCGAATTCGGC 943
consensus_7694#1      ----------------------------------------------