These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7696#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1161 fasta sequence [AAGTGCCCGTACTGCCACAGCGGCTTCGTCGAGGAGATCGAGTCCGCGCGCGGCGTCGCCACCGGCGGCGGCGGCGCGATCTCCTCCGTCTGGGCCCCCATCATCGACGGCATGGTTGGCGGCGGCGGCGGCGACGCGTCCGCCGCCACCGCCGCAGCCGTCGCCTCGCGGACGCCGCCGGCGCGGACGACGGCTACTACCGCGACCTGGCCCTCCTCGACTTCTCCGAGAGCCGGCGGCGCACCGCCGCGCTGCTGCTGCTCATGCAGGAGTTTCGGGAGCGCCAGCTCCAGCGCCTCGAGTCCGCCACCGCCACGATCTCCGCCGCCGCGGCCGAGGCCGGCGCCGTCGTCGGGACCTCGAGAGACGCGGAGGGCGTGGCGCTGGCCGACTACTTCCTCGGCCCCGGCCTGGACGCCCTGATGCAGCGGGTGGGCGACGGCGACGCGGAGCGGCAGGGCACGCTCCCGGCCAAGAAGGAGGCCGTGGAGTCCATGCCGACGGTGGAGGTGGCCGCCGGGGGCGACTGCGACTCCGCCTGCGCCGTCTGCCTCGAGGACTACGCCGCCGGCGAGCGCGCCACGGAAATGCCGTGCCGGCACAGGTTCCACGCCAAGTGCATCGTGCCGTGGCTCAAGATGCACAGCTCCTGCCCCGTCTGCCGCTTCCAGCTCCCCACCGACGACGACGACGACTCCTCCAAGTCCGCACGCGGCGGCGCCGCCCACTCCGGCGGCGGCCGGCGGTTGTCCCAGCCGGCGCCGCGGGTCGACGGGGG-AGGCCTGGGCAGGTTGCCGGCCGTGATGCAGGAGCTCAGGAGCATCCTCTCCCAGCCGTCGCCGGCG-TCGAC-TTCCGGCAGCAGCTCGCACGCGCAGCAGCAC-AGCGACGAGTGA-TGACGAC-TCAGGA-TGGT-CGCCGGTCACCGGCGGTGC-TGC-TGCTCC-GGCGACCGGCGGAGGAGCTCATGGTTTTGCAACTTTGACAATGTACATAATCCGGGGTTCGTCGTCGCTGTGGTGACTGGCTTTGGTGCCAATGGAACTTCATTTTTCCTCGTCTCCCCTTTCTTTAGCAATCATCTTGTGATATATCCCATGATTTTAATATACAATTTGCGTTCGGCGGAAAATGGNGTAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAA] [+] EMBL AK071739 [AAGTGCCCGTACTGCCACAGCGGCTTCGTCGAGGAGATCGAGTCCGCGCGCGGCGTCGCCACCGGCGGCGGCGGCGCGATCTCCTCCGTCTGGGCCCCCATCATCGACGGCATGGTTGGCGGCGGCGGCGGCGACGCGTCCGCCGCCACCGCCGCAGCCGTCGCCTCGCGGACGCCGCCGGCGCGGACGACGGCTACTACCGCGACCTGGCCCTCCTCGACTTCTCCGAGAGCCGGCGGCGCACCGCCGCGCTGCTGCTGCTCATGCAGGAGTTTCGGGAGCGCCAGCTCCAGCGCCTCGAGTCCGCCACCGCCACGATCTCCGCCGCCGCGGCCGAGGCCGGCGCCGTCGTCGGGACCTCGAGAGACGCGGAGGGCGTGGCGCTGGCCGACTACTTCCTCGGCCCCGGCCTGGACGCCCTGATGCAGCGGGTGGGCGACGGCGACGCGGAGCGGCAGGGCACGCTCCCGGCCAAGAAGGAGGCCGTGGAGTCCATGCCGACGGTGGAGGTGGCCGCCGGGGGCGACTGCGACTCCGCCTGCGCCGTCTGCCTCGAGGACTACGCCGCCGGCGAGCGCGCCACGGAAATGCCGTGCCGGCACAGGTTCCACGCCAAGTGCATCGTGCCGTGGCTCAAGATGCACAGCTCCTGCCCCGTCTGCCGCTTCCAGCTCCCCACCGACGACGACGACGACTCCTCCAAGTCCGCACGCGGCGGCGCCGCCCACTCCGGCGGCGGCCGGCGGTTGTCCCAGCCGGCGCCGCGGGTCGACGGGGG AGGCCTGGGCAGGTTGCCGGCCGTGATGCAGGAGCTCAGGAGCATCCTCTCCCAGCCGTCGCCGGCG TCGAC TTCCGGCAGCAGCTCGCACGCGCAGCAGCAC AGCGACGAGTGA TGACGAC TCAGGA TGGT CGCCGGTCACCGGCGGTGC TGC TGCTCC GGCGACCGGCGGAGGAGCTCATGGTTTTGCAACTTTGACAATGTACATAATCCGGGGTTCGTCGTCGCTGTGGTGACTGGCTTTGGTGCCAATGGAACTTCATTTTTCCTCGTCTCCCCTTTCTTTAGCAATCATCTTGTGATATATCCCATGATTTTAATATACAATTTG ] [+] EMBL C72938 [ CTCAAGATGCACAGCTCCTGCCCCGTCTGCCGCTTCCAGCTCCCCACCGACGACGACGACGACTCCTCCAAGTCCGCACGCGGCGGCGCCGCNCACTCCGGNGGCGGCCGGCGGTTGTCCCAGCCGGCGCCGCGGGTCGACGGGGG AGGCCTGGGCAGGTTGCCGGCCGTGATGCAGGAGCTCAGGAGCATCCTCTCCCAGCCGTCGCCGGCGTTCGACTTTCCGGCAGCAGCTCGCACGCGCANAGGCACAAGCGACGAGTGATTGACGACTTCAGGATTGGTCCGCGGTTCACCGG GGTTCTTGCTTGCTCCGGGCGA ] [+] EMBL AU081286 [ cnCGGGTCGACGGGGGAAGGCCTGGGCAGGTTNCCGGCCGTGATGCAGGAGCTCAGGAGCATCCTCTCCCAGCCGTCGCCGGNG TCGAC TTCCGGCAGCAGCTCGCACGCGCAGCAGCAC AGCGACGAGTGA TGACGAC TCAGGN TGGT CGCCGGTCACCGGCGGTGC TGC TGCTCC GGCGACCGGCNGAGGAGCTCATGGTTTTGCAACTTTGACAATGTACATAATCCGGGGTTCGTCGTCGCTGTGGTGACTGGCTTTGGTGCCAATGGAACTTCATTTTTCCTCGTCTCCCCTTTCTTTAGCAATCATCTTGTGATATATCCCATGATTTTAATATACAATTTGCGTTCGGCGGAAAATGGNGTAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAA] consensusID : consensus_7696#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 947 fasta sequence [AGGTGGAGATCAAGTGCCCGTACTGCCACAGCGGCTTCGTCGAGGAGATCGAGTCCGCGCGCGGCGTCGCCACCGGCGGCGGCGGCGCGATCTCCTCCGTCTGGGCCCCCATCATCGACGGCATGGTTGGCGGCGGCGGCGGCGACGCCGTCCGCCGCCACCGCCGCAGCCGTCGCCTCGCGGACGCCGCCGGCGCGGACGACGGCTACTACCGCGACCTGGCCCTCCTCGACTTCTCCGAGAGCCGGCGGCGCACCGCCGCGCTGCTGCTGCTCATGCAGGAGTTTCGGGAGCGCCAGCTCCAGCGCCTCGAGTCCGCCACCGCCACGATCTCCGCCGCCGCGGCCGAGGCCGGCGCCGTCGTCGGGACCTCGAGAGACGCGGAGGGCGTGGCGCTGGCCGACTACTTGCTCGGTCCCGGCCTGTACGCCCTGATGCAGCGGGTGGGCGACGGCGACGCGGTGCGGTAGGGCACGCTCGCCGACAATAAGGAGGTCGAGGGTTTCTGCCAACAGTTCTGGTTGTCTTCGTGGGCTGCTGTGACGTCCTCTTCTCATATATCTATGATACTGTGCTCACCAGAATACTTCCTTACTTGCTGTGCTCCTCAGAATCACGGGGTCACTGATACCCGGGTGTCTTCCCCAGTCTATCTCTACGCGTCTAACTTTTAACCCCTTGTAACTTTTACTACCTATCCACTGTAAGGACATATTTTCTGAAATGTTTTTTTATTATTAACAAACTGCTGTATAATTTGTTACATCGTGATCTGTGTATATTAATGGTTGTTTCCTAGTTACTTATGTTTCATAAACGTTATATTTGTAGTGGTTTTTATCATGCTGAAATTCTACAACACTTCTACTTGAACCGAGTCTCTAATTTTACTTTGTATTTGACGGCAGTTTCCTTCGCGCAATATATATGAATAGATTGTTGTATCC] [+] EMBL BE040717 [AGGTGGAGATCAAGTGCCCGTACTGCCACAGCGGCTTCGTCGAGGAGATCGAGTCCGCGCGCGGCGTCGCCACCGGCGGCGGCGGCGCGATCTCCTCCGTCTGGGCCCCCATCATCGACGGCATGGTTGGCGGCGGCGGCGGCGACGCCGTCCGCCGCCACCGCCGCAGCCGTCGCCTCGCGGACGCCGCCGGCGCGGACGACGGCTACTACCGCGACCTGGCCCTCCTCGACTTCTCCGAGAGCCGGCGGCGCACCGCCGCGCTGCTGCTGCTCATGCAGGAGTTTCGGGAGCGCCAGCTCCAGCGCCTCGAGTCCGCCACCGCCACGATCTCCGCCGCCGCGGCCGAGGCCGGCGCCGTCGTCGGGACCTCGAGAGACGCGGAGGGCGTGGCGCTGGCCGACTACTTGCTCGGTCCCGGCCTGTACGCCCTGATGCAGCGGGTGGGCGACGGCGACGCGGTGCGGTAGGGCACGCTCGCCGACAATAAGGAGGTCGAGGGTTTCTGCCAACAGTTCTGGTTGTCTTCGTGGGCTGCTGTGACGTCCTCTTCTCATATATCTATGATACTGTGCTCACCAGAATACTTCCTTACTTGCTGTGCTCCTCAGAATCACGGGGTCACTGATACCCGGGTGTCTTCCCCAGTCTATCTCTACGCGTCTAACTTTTAACCCCTTGTAACTTTTACTACCTATCCACTGTAAGGACATATTTTCTGAAATGTTTTTTTATTATTAACAAACTGCTGTATAATTTGTTACATCGTGATCTGTGTATATTAATGGTTGTTTCCTAGTTACTTATGTTTCATAAACGTTATATTTGTAGTGGTTTTTATCATGCTGAAATTCTACAACACTTCTACTTGAACCGAGTCTCTAATTTTACTTTGTATTTGACGGCAGTTTCCTTCGCGCAATATATATGAATAGATTGTTGTATCC] consensusID : consensus_7696#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [AAGTGCCCGTACTGCCACAGCGGCTTCGTCGAGGAGATCGAGTCCGCGCGCGGCGTCGCCACCGGGGCGGCGGCGCGATCTCCTCCGTCTGGGCCCCCATCATCGACGGCATGGTTTNCCAGCGGCGGCGGCGAGCTTCACGCGCAACNCGCCGNAAGCCGTCGCTTCGCGGACGCCGCCGGGCGGACGACGCTAATAACGCAATTGGCCTCCTTGAATTTTCG] [+] EMBL AU081287 [AAGTGCCCGTACTGCCACAGCGGCTTCGTCGAGGAGATCGAGTCCGCGCGCGGCGTCGCCACCGGGGCGGCGGCGCGATCTCCTCCGTCTGGGCCCCCATCATCGACGGCATGGTTTNCCAGCGGCGGCGGCGAGCTTCACGCGCAACNCGCCGNAAGCCGTCGCTTCGCGGACGCCGCCGGGCGGACGACGCTAATAACGCAATTGGCCTCCTTGAATTTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7696#0 -----------AAGTGCCCGTACTGCCACAGCGGCTTCGTCGAGGAGATCGAGTCCGCGC 49 consensus_7696#2 -----------AAGTGCCCGTACTGCCACAGCGGCTTCGTCGAGGAGATCGAGTCCGCGC 49 consensus_7696#1 AGGTGGAGATCAAGTGCCCGTACTGCCACAGCGGCTTCGTCGAGGAGATCGAGTCCGCGC 60 ************************************************* consensus_7696#0 GCGGCGTCGCCACCGGCGGCGGCGGCGCGATCTCCTCCGTCTGGGCCCCCATCATCGACG 109 consensus_7696#2 GCGGCGTCGCCACCGG-GGCGGCGGCGCGATCTCCTCCGTCTGGGCCCCCATCATCGACG 108 consensus_7696#1 GCGGCGTCGCCACCGGCGGCGGCGGCGCGATCTCCTCCGTCTGGGCCCCCATCATCGACG 120 **************** ******************************************* consensus_7696#0 GCATGGTTGGC-GGCGGCGGCGGCGACGC-GTCCGCCGCCACC-GCCGCA-GCCGTCGCC 165 consensus_7696#2 GCATGGTTTNCCAGCGGCGGCGGCGA-GC-TTCACGCGCAACNCGCCGNAAGCCGTCGCT 166 consensus_7696#1 GCATGGTTGGC-GGCGGCGGCGGCGACGCCGTCCGCCGCCACC-GCCGCA-GCCGTCGCC 177 ******** * ************* ** ** *** ** **** * ******** consensus_7696#0 TCGCGGACGCCGCCGGCGCGGACGACGGCTACTACCGCGACCTGGCCCTCCTCGACTTCT 225 consensus_7696#2 TCGCGGACGCCGCCGG-GCGGACGACG-CTAATAACGCAA--TTGGCCTCCTTGAATTTT 222 consensus_7696#1 TCGCGGACGCCGCCGGCGCGGACGACGGCTACTACCGCGACCTGGCCCTCCTCGACTTCT 237 **************** ********** *** ** *** * * * ****** ** ** * consensus_7696#0 CCGAGAGCCGGCGGCGCACCGCCGCGCTGCTGCTGCTCATGCAGGAGTTTCGGGAGCGCC 285 consensus_7696#2 CG---------------------------------------------------------- 224 consensus_7696#1 CCGAGAGCCGGCGGCGCACCGCCGCGCTGCTGCTGCTCATGCAGGAGTTTCGGGAGCGCC 297 * consensus_7696#0 AGCTCCAGCGCCTCGAGTCCGCCACCGCCACGATCTCCGCCGCCGCGGCCGAGGCCGGCG 345 consensus_7696#2 ------------------------------------------------------------ consensus_7696#1 AGCTCCAGCGCCTCGAGTCCGCCACCGCCACGATCTCCGCCGCCGCGGCCGAGGCCGGCG 357 consensus_7696#0 CCGTCGTCGGGACCTCGAGAGACGCGGAGGGCGTGGCGCTGGCCGACTACTTCCTCGGCC 405 consensus_7696#2 ------------------------------------------------------------ consensus_7696#1 CCGTCGTCGGGACCTCGAGAGACGCGGAGGGCGTGGCGCTGGCCGACTACTTGCTCGGTC 417 consensus_7696#0 CCGGCCTGGACGCCCTGATGCAGCGGGTGGGCGACGGCGACGCGGAGCGGCAGGGCACGC 465 consensus_7696#2 ------------------------------------------------------------ consensus_7696#1 CCGGCCTGTACGCCCTGATGCAGCGGGTGGGCGACGGCGACGCGGTGCGGTAGGGCACGC 477 consensus_7696#0 TCCCGGCCAAGAAGGAGGCCGTGGAGTCCATGCCGACGGTGGAGGTGGCCGCCGGGGGCG 525 consensus_7696#2 ------------------------------------------------------------ consensus_7696#1 TCGCCGACAATAAGGAGGTCGAGG-GTTTCTGCCAACAGTTCTGGTTGTCTTCGTGGGCT 536 consensus_7696#0 ACTGCGACTCCGCCTGCGCCGTCTGCCTCGAGGACTACGCCGCCGGCGAGCGCGCCACGG 585 consensus_7696#2 ------------------------------------------------------------ consensus_7696#1 GCTGTGACGTCCTCTTC-TCATATATCTATGATACTGTGCT-----------CACCAGAA 584 consensus_7696#0 AAATGCCGTGCCGGCACAGGTTCCACGCCAAGTGCATCGTGCCGTGGCTCAAGATGCACA 645 consensus_7696#2 ------------------------------------------------------------ consensus_7696#1 TACTTCCTTACTTGC-TGTGCTCCTCA------GAATCACGGGGTCACT-GATACCCGGG 636 consensus_7696#0 GCTCCTGCCCCGTCTGCCGCTTCCAGCTCCCCACCGACGACGACG-ACGACTCCTCCAAG 704 consensus_7696#2 ------------------------------------------------------------ consensus_7696#1 TGTCTTCCCCAGTCTATCTCTAC--GCGTCTAACTTTTAACCCCTTGTAACTTTTACTA- 693 consensus_7696#0 TCCGCACGCGGCGGCGCCGCCCACTCCGGCGGCGGCCGGCGGTTGTCC-CAGCCGGCGCC 763 consensus_7696#2 ------------------------------------------------------------ consensus_7696#1 CCTATCCACTGTAAGGACATATTTTCTGA-AATGTTTTTTTATTATTAACAAACTGCTGT 752 consensus_7696#0 GCGGGTCGACGGGG-GAGGCCTGGGCAGGTTGCCGGCCGTGATGCAGGAGCTCAGGAGCA 822 consensus_7696#2 ------------------------------------------------------------ consensus_7696#1 ATAATTTGTTACATCGTGATCTGTGTATATTAATGGTTGTTTCCTAGTTACTTATG---- 808 consensus_7696#0 TCCTCTCCCAGCCGTCGCCGGCGTCGACTTCCGGCAGCAGCTCGCACGCGCAGCAGCACA 882 consensus_7696#2 ------------------------------------------------------------ consensus_7696#1 ---TTTCATAAACGTTATATTTGTAGTGGTTTT-TATCATGCTG-AAATTCTACAACACT 863 consensus_7696#0 GCGACGAGTGATGACGACTCAGGATGGTCGCCGGTCACCGGCGGTGCTGCTGCTCCGGCG 942 consensus_7696#2 ------------------------------------------------------------ consensus_7696#1 TCTACTTGAACCGA-GTCTCTA-ATTTTACTTTGTATTTGACGGCAGTTTCCTTCGCGCA 921 consensus_7696#0 ACCGGCG-GAGGAGCTCATGGTTTTGCAACTTTGACAATGTACATAATCCGGGGTTCGTC 1001 consensus_7696#2 ------------------------------------------------------------ consensus_7696#1 ATATATATGAATAGATTGTTGTATCC---------------------------------- 947 consensus_7696#0 GTCGCTGTGGTGACTGGCTTTGGTGCCAATGGAACTTCATTTTTCCTCGTCTCCCCTTTC 1061 consensus_7696#2 ------------------------------------------------------------ consensus_7696#1 ------------------------------------------------------------ consensus_7696#0 TTTAGCAATCATCTTGTGATATATCCCATGATTTTAATATACAATTTGCGTTCGGCGGAA 1121 consensus_7696#2 ------------------------------------------------------------ consensus_7696#1 ------------------------------------------------------------ consensus_7696#0 AATGGNGTAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAA 1161 consensus_7696#2 ---------------------------------------- consensus_7696#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||