These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1371 fasta sequence [ACCACTATCTCTGCCAAAACCAAACCAGAAACACACACCAAACACACAAGACAAGGTAGCAACAACAATGGCGAGACATGGCCCTCAAAGCCATGACCAACCACTCCAAGAAGAGGACTACATAGACATGGACCTGAGCTCACCTGCAGCGGCAGAGGCGGTGACTGCCAGTGCCAGAGCAAGCTTGCTCTGCTACAGCACAGCCATGGCAGCCTCCCCACAAAACTCAAGGGAGTTCGAGTTCCACATGTCGGCTCCGGTTGACAAGTGGGAGCCCGCGGCATCACCAGCCGATGAGCTCTTCTACAAGGGCAAGCTACTGCCGCTCCACCTTCCACCACGCATCCAGATGGTCGAGAAGCTCCTCGAGAGTGCAGCTGAGAAGGGCCTCCTCTCCGCGAGCACTGCCCCAGCAACGCCATACCAGTCGTGCAATGCATCACCGGCAAATTCATGTTATGTCAGTGGAGAGCTCAATGCTGAGCATTACTTCCACGAGTGCACATCAGCTGGTATTGGTGCTGCTGAGGAGGCCGCCGCCTGCGAAAAGAAGCCATGGTCCAAGAAGCTCAAGTTCATCAGGCATCTCAACCTTGGCCTCAAGCTCAAGGCATCAAAAGCTTATATCAAGACAATATTTGCCACTAAAGCAGGCAATCCAGATGGCAAGACTGGTACACCTAGTGCAAATGAGCTCTCCAATGCGCAGTTCAAGTCTTGGAGGAAGAACCCATTTGGCCAGATCAGAAGCAACAGGTACATAGCCTCGCCTATCAGCAACAGTGTCACACTTGGAGGGAGGCTTAAAGAAGATGAGTGCGGCCACAGGAGGTCCTTCTCCAGCGTCATTATTCGATACTCATCATCAAACAAGACATCCTCAGCGTCATCATCGTCATGCTCTTCATCAAATTCATCCTCCTCCATACTAAGCTCCACTGACTCTGGTGTGGGGCCAGTGCTCAGGAGGAGCAGCAGTGCAAGCTCAGAGATGGACAATCCAATCCAGGGAGCAATAGCATACTGCAAAAGGTCACAGCAACTGGCCTCGGTGAGAAAGAGTGCAAGCGATGCAGGTTTCCGTTTCATGTCATCATCAGCGTCAAGGATAGCTGCAGAGTCTGAAGATCCAGATGATATAATTGAGATTTGTGGACGATGAAGTGTTTATGTACAAATTTAAACACTTTTGCTAATTCTGTACACTTTTGATCTTCAGATACCTGCAGACATGATCTTATAATGTCCTTCAGAAAAATTCAAGTAGCTTGTGTAATTTGTGTAAGAACAAATAGTTTCAAATTTCTAATTCTAATCTTTAACACCAAATAGTGTAAGCACTTGGAATGACTGTCTAATACCAGAGTGCAG] [+] EMBL AK064231 [ACCACTATCTCTGCCAAAACCAAACCAGAAACACACACCAAACACACAAGACAAGGTAGCAACAACAATGGCGAGACATGGCCCTCAAAGCCATGACCAACCACTCCAAGAAGAGGACTACATAGACATGGACCTGAGCTCACCTGCAGCGGCAGAGGCGGTGACTGCCAGTGCCAGAGCAAGCTTGCTCTGCTACAGCACAGCCATGGCAGCCTCCCCACAAAACTCAAGGGAGTTCGAGTTCCACATGTCGGCTCCGGTTGACAAGTGGGAGCCCGCGGCATCACCAGCCGATGAGCTCTTCTACAAGGGCAAGCTACTGCCGCTCCACCTTCCACCACGCATCCAGATGGTCGAGAAGCTCCTCGAGAGTGCAGCTGAGAAGGGCCTCCTCTCCGCGAGCACTGCCCCAGCAACGCCATACCAGTCGTGCAATGCATCACCGGCAAATTCATGTTATGTCAGTGGAGAGCTCAATGCTGAGCATTACTTCCACGAGTGCACATCAGCTGGTATTGGTGCTGCTGAGGAGGCCGCCGCCTGCGAAAAGAAGCCATGGTCCAAGAAGCTCAAGTTCATCAGGCATCTCAACCTTGGCCTCAAGCTCAAGGCATCAAAAGCTTATATCAAGACAATATTTGCCACTAAAGCAGGCAATCCAGATGGCAAGACTGGTACACCTAGTGCAAATGAGCTCTCCAATGCGCAGTTCAAGTCTTGGAGGAAGAACCCATTTGGCCAGATCAGAAGCAACAGGTACATAGCCTCGCCTATCAGCAACAGTGTCACACTTGGAGGGAGGCTTAAAGAAGATGAGTGCGGCCACAGGAGGTCCTTCTCCAGCGTCATTATTCGATACTCATCATCAAACAAGACATCCTCAGCGTCATCATCGTCATGCTCTTCATCAAATTCATCCTCCTCCATACTAAGCTCCACTGACTCTGGTGTGGGGCCAGTGCTCAGGAGGAGCAGCAGTGCAAGCTCAGAGATGGACAATCCAATCCAGGGAGCAATAGCATACTGCAAAAGGTCACAGCAACTGGCCTCGGTGAGAAAGAGTGCAAGCGATGCAGGTTTCCGTTTCATGTCATCATCAGCGTCAAGGATAGCTGCAGAGTCTGAAGATCCAGATGATATAATTGAGATTTGTGGACGATGAAGTGTTTATGTACAAATTTAAACACTTTTGCTAATTCTGTACACTTTTGATCTTCAGATACCTGCAGACATGATCTTATAATGTCCTTCAGAAAAATTCAAGTAGCTTGTGTAATTTGTGTAAGAACAAATAGTTTCAAATTTCTAATTCTAATCTTTAACACCAAATAGTGTAAGCACTTGGAATGACTGTCTAATACCAGAGTGCAG] [+] EMBL AU222936 [ ACAAGACAAGGTAGCAACAACAATGGCGAGACATGGCCCTCAAAGCCATGACCAACCACTCCAAGAAGAGGACTACATAGACATGGACCTGAGCTCACCTGCAGCGGCAGAGGCGGTGACTGCCAGTGCCAGAGCAAGCTTGCTCTGCTACAGCACAGCCATGGCAGCCTCCCCACAAAACTCAAGGGAGTTCGAGTTCCACATGTCGGCTCCGGTTGACAAGTGGGAGCCCGCGGCATCACCAGCCGATGAGCTCTTCTACAAGGGCAAGCTACTGCCGCTCCACCTTCCACCACGCATCCAGATGGTCGAGAAGCTCCTCGAGAGTGCAGCTGAGAAGGGCCTCCTCTCCGCGAGCACTGCCCCAGCAACGCCATACCAGTCGTGCAATGCATCACCGGCAAATTCATGTTATGTCAGTGGAGAGCTCAATGCTGAGCATTACTTC ] [+] EMBL AU222937 [ CAGGAGGTCCTTCTCCAGCGTCATTATTCGATACTCATCATCAAACAAGACATCCTCAGCGTCATCATCGTCATGCTCTTCATCAAATTCATCCTCCTCCATACTAAGCTCCNCTGACTCTGGTGTGGGGCCAGTGCTCAGGAGGAGCAGCAGTGCAAGCTCAGAGATGGACAATCCAATCCAGGGAGCAATAGCATACTGCAAAAGGTCACAGCAACTGGCCTCGGTGAGAAAGAGTGCAAGCGATGCAGGTTTCCGTTTCATGTCATCATCAGCGTCAAGGATAGCTGCAGAGTCTGAAGATCCAGATGATATAATTGAGATTTGCGGACGATGAAGTGTTTATGTACAAATTTAAACACTTTTGCTAATTCTGTACACTTTTGATCTTCAGATACCTGCAGACATGATCTTATAATGTCCTTCAGAAAAAaa ] consensusID : consensus_7700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [ACAAGACAAGGTAGCAACAACAATGGCGAGACATGGCCCTCAAAGCCATGACCAACCACTCCAAGAAGAGGACTACATAGACATGGACCTGAGCTCACCTGCAGCGGCAGAGGCGGTGACTGCCAGTGCCAGAGCAAGCTTGCTCTGCTACAGCACAGCCATGGCAGCCTCCCCACAAAACTCAAGGGAGTTCGAGTTCCACATGTCGGCTCCGGTTGACAAGTGGGAGCCCGCGGCATCACCAGCCGATGAGCTCTTCTACAAGGGCAAGCTACTGCCGCTCCACCTTCCACCACGNATCCAGATGGTCGAGAAGCTTCTCGAGAGTTCAGTTGAGAAGGGNCTTCTCTTCGCGAGCACTTGCCCAGCAACGGCATACCAGTCGTGCAATGATNACCGGCAATTCATGTTATGTCAGTGGGGGCTNAATGTTGACATTATTTTCACGGGTNCAATAAGTTGGATTGGNGCTGTTAAGAGGCCGCGCTTCNAAAGAAGCATGGTCCAGAGGTAAGTTATTAGGATTTAACTTGGCTAAGTAAGGATNAAGTTTT] [+] EMBL OSS1765A [ACAAGACAAGGTAGCAACAACAATGGCGAGACATGGCCCTCAAAGCCATGACCAACCACTCCAAGAAGAGGACTACATAGACATGGACCTGAGCTCACCTGCAGCGGCAGAGGCGGTGACTGCCAGTGCCAGAGCAAGCTTGCTCTGCTACAGCACAGCCATGGCAGCCTCCCCACAAAACTCAAGGGAGTTCGAGTTCCACATGTCGGCTCCGGTTGACAAGTGGGAGCCCGCGGCATCACCAGCCGATGAGCTCTTCTACAAGGGCAAGCTACTGCCGCTCCACCTTCCACCACGNATCCAGATGGTCGAGAAGCTTCTCGAGAGTTCAGTTGAGAAGGGNCTTCTCTTCGCGAGCACTTGCCCAGCAACGGCATACCAGTCGTGCAATGATNACCGGCAATTCATGTTATGTCAGTGGGGGCTNAATGTTGACATTATTTTCACGGGTNCAATAAGTTGGATTGGNGCTGTTAAGAGGCCGCGCTTCNAAAGAAGCATGGTCCAGAGGTAAGTTATTAGGATTTAACTTGGCTAAGTAAGGATNAAGTTTT] consensusID : consensus_7700#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence [NGGCCTTCGGNTTGGAGGAACAGGAGGTGCAAAGGCGGATTGGCCAGGGTTACCCGGTTTTCAATGTTCATTCATCAGCGTCAAGGATAGCTGCAGAGTCTGAAGATCCAGATGATATAATTGAGATTTGCGGACGATGAAGTCGTTTATGTACAAATTTAAACACTTTTGCTAATTCTGTACACTTTTGATCTTCAGATACCTGCAGACATGATCTTATAATGTCCTTCAGAAAAAAA] [+] EMBL AU161624 [NGGCCTTCGGNTTGGAGGAACAGGAGGTGCAAAGGCGGATTGGCCAGGGTTACCCGGTTTTCAATGTTCATTCATCAGCGTCAAGGATAGCTGCAGAGTCTGAAGATCCAGATGATATAATTGAGATTTGCGGACGATGAAGTCGTTTATGTACAAATTTAAACACTTTTGCTAATTCTGTACACTTTTGATCTTCAGATACCTGCAGACATGATCTTATAATGTCCTTCAGAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7700#0 ACCACTATCTCTGCCAAAACCAAACCAGAAACACACACCAAACACACAAGACAAGGTAGC 60 consensus_7700#1 ---------------------------------------------ACAAGACAAGGTAGC 15 consensus_7700#2 ------------------------------------------------------------ consensus_7700#0 AACAACAATGGCGAGACATGGCCCTCAAAGCCATGACCAACCACTCCAAGAAGAGGACTA 120 consensus_7700#1 AACAACAATGGCGAGACATGGCCCTCAAAGCCATGACCAACCACTCCAAGAAGAGGACTA 75 consensus_7700#2 ------------------------------------------------------------ consensus_7700#0 CATAGACATGGACCTGAGCTCACCTGCAGCGGCAGAGGCGGTGACTGCCAGTGCCAGAGC 180 consensus_7700#1 CATAGACATGGACCTGAGCTCACCTGCAGCGGCAGAGGCGGTGACTGCCAGTGCCAGAGC 135 consensus_7700#2 --------NGGCCTTCGGNTTGGAGG-AACAGGAGGTGCAAAGGCGGATTG-GCCAGGGT 50 ** * * * * * * * * ** ** * * * * ***** * consensus_7700#0 AAGCTTGCTCTGCTACAGCACAGCCATGGCAGCCTCCCCACAAAACTCAAGGGAGTTCGA 240 consensus_7700#1 AAGCTTGCTCTGCTACAGCACAGCCATGGCAGCCTCCCCACAAAACTCAAGGGAGTTCGA 195 consensus_7700#2 TACCCGGTTTT--CAATGTTCATTCAT--CAGCGTC--AAGGATAGCTGCAGAGTCTGAA 104 * * * * * * * ** *** **** ** * * * * * * consensus_7700#0 GTTCCACATGTCGGCTCCGGTTGACAAGTGGGAGCCCGCGGCATCACCAGCCGATGAGCT 300 consensus_7700#1 GTTCCACATGTCGGCTCCGGTTGACAAGTGGGAGCCCGCGGCATCACCAGCCGATGAGCT 255 consensus_7700#2 GATCCAGATGA----TATAATTGA-GATTTGCGGACGATGAAGTC----GTTTATGTACA 155 * **** *** * **** * * * * * * ** * *** * consensus_7700#0 CTTCTACAAGGGCAAGCTACTGCCGCTCCACCTTCCACCACGCATCCAGATGGTCGAGAA 360 consensus_7700#1 CTTCTACAAGGGCAAGCTACTGCCGCTCCACCTTCCACCACGNATCCAGATGGTCGAGAA 315 consensus_7700#2 AATTTAAACACTTTTGCTAATTCTGTACACTTTTGATCTTCAGATACCTGCAGACATGA- 214 * ** * **** * * * * ** * * ** * * * ** consensus_7700#0 GCTCCTCGAGAGTGCAGCTGAGAAGGGCCTCCTCTCCGCGAGCACTGCCCCAGCAACGCC 420 consensus_7700#1 GCTTCTCGAGAGTTCAGTTGAGAAGGGNCTTCTCTTCGCGAGCACTTGCCCAGCAACGGC 375 consensus_7700#2 ---TCTTATAATGTCCTTCAGAAAAAAA-------------------------------- 239 ** * * ** consensus_7700#0 ATACCAGTCGTGCAATGCATCACCGGCAAATTCATGTTATGTCAGTGGAGAGCTCAATGC 480 consensus_7700#1 ATACCAGTCGTGCAATG-ATNACCGGCAA-TTCATGTTATGTCAGTGGGG-GCTNAATGT 432 consensus_7700#2 ------------------------------------------------------------ consensus_7700#0 TGAGCATTACTTCCACGAGTGCACATCAGCTGGTATTGGTGCTGCTGAGGAGGCCGCCGC 540 consensus_7700#1 TGA-CATTATTTTCACGGGTNCA-ATAAGTTGG-ATTGGNGCTGTTAAG-AGGCCGC-GC 487 consensus_7700#2 ------------------------------------------------------------ consensus_7700#0 CTGCGAAAAGAAGCCATGGTCCAAGAAGCTCAAGTTCATCAGGCATCTCAACCTTGGCCT 600 consensus_7700#1 TTC--NAAAGAAGC-ATGGTCCAGAGG---TAAGTT-ATTAGG-ATTTAA--CTTGGCT- 536 consensus_7700#2 ------------------------------------------------------------ consensus_7700#0 CAAGCTCAAGGCATCAAAAGCTTATATCAAGACAATATTTGCCACTAAAGCAGGCAATCC 660 consensus_7700#1 -AAGT---AAGGATNAAGTTTT-------------------------------------- 554 consensus_7700#2 ------------------------------------------------------------ consensus_7700#0 AGATGGCAAGACTGGTACACCTAGTGCAAATGAGCTCTCCAATGCGCAGTTCAAGTCTTG 720 consensus_7700#1 ------------------------------------------------------------ consensus_7700#2 ------------------------------------------------------------ consensus_7700#0 GAGGAAGAACCCATTTGGCCAGATCAGAAGCAACAGGTACATAGCCTCGCCTATCAGCAA 780 consensus_7700#1 ------------------------------------------------------------ consensus_7700#2 ------------------------------------------------------------ consensus_7700#0 CAGTGTCACACTTGGAGGGAGGCTTAAAGAAGATGAGTGCGGCCACAGGAGGTCCTTCTC 840 consensus_7700#1 ------------------------------------------------------------ consensus_7700#2 ------------------------------------------------------------ consensus_7700#0 CAGCGTCATTATTCGATACTCATCATCAAACAAGACATCCTCAGCGTCATCATCGTCATG 900 consensus_7700#1 ------------------------------------------------------------ consensus_7700#2 ------------------------------------------------------------ consensus_7700#0 CTCTTCATCAAATTCATCCTCCTCCATACTAAGCTCCACTGACTCTGGTGTGGGGCCAGT 960 consensus_7700#1 ------------------------------------------------------------ consensus_7700#2 ------------------------------------------------------------ consensus_7700#0 GCTCAGGAGGAGCAGCAGTGCAAGCTCAGAGATGGACAATCCAATCCAGGGAGCAATAGC 1020 consensus_7700#1 ------------------------------------------------------------ consensus_7700#2 ------------------------------------------------------------ consensus_7700#0 ATACTGCAAAAGGTCACAGCAACTGGCCTCGGTGAGAAAGAGTGCAAGCGATGCAGGTTT 1080 consensus_7700#1 ------------------------------------------------------------ consensus_7700#2 ------------------------------------------------------------ consensus_7700#0 CCGTTTCATGTCATCATCAGCGTCAAGGATAGCTGCAGAGTCTGAAGATCCAGATGATAT 1140 consensus_7700#1 ------------------------------------------------------------ consensus_7700#2 ------------------------------------------------------------ consensus_7700#0 AATTGAGATTTGTGGACGATGAAGTGTTTATGTACAAATTTAAACACTTTTGCTAATTCT 1200 consensus_7700#1 ------------------------------------------------------------ consensus_7700#2 ------------------------------------------------------------ consensus_7700#0 GTACACTTTTGATCTTCAGATACCTGCAGACATGATCTTATAATGTCCTTCAGAAAAATT 1260 consensus_7700#1 ------------------------------------------------------------ consensus_7700#2 ------------------------------------------------------------ consensus_7700#0 CAAGTAGCTTGTGTAATTTGTGTAAGAACAAATAGTTTCAAATTTCTAATTCTAATCTTT 1320 consensus_7700#1 ------------------------------------------------------------ consensus_7700#2 ------------------------------------------------------------ consensus_7700#0 AACACCAAATAGTGTAAGCACTTGGAATGACTGTCTAATACCAGAGTGCAG 1371 consensus_7700#1 --------------------------------------------------- consensus_7700#2 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||