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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7701#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence
[TCTTTTTAAGAATGTAGCAGCAACTTTGTTAATCAAATTAATCCTTACTACTTTCAAAATTACCCTTCAAATTATCCCCCAGTATAAAAAAATGTAAAATAATAGCAGAGCCTTTCCAGCCATCAGTGTGAACGGCACCGGTTGCGATGGCAATGTACAAATGGGTACAGAAGGAAGCGAAACTGGCACTCGTCTCCATCTTGGCGTGCGTCAGGAGCCTCCAAGCGAAGCCTGAAACAATGGCCGACGCCGCCAAGATGAGGAACCACTCGGTGAAGCTGCAGACCGAACCGCTGCTTATGGCTGGTATCGACACGGCCAGGAAGGCAGGAACCCGGTGAACGTGACCTTGGTCCGCTCAACGACGCCGGCTCTGCACCCTCTCCTCCTCCACCTCCGCCGCCGTCCGCCGCGGCGACATCGAATGCGTGCACCAGCAATATGAGGACGAGCGGAGACAGCAACGACAGCAGCGCCCGCAATTTCACGAGCGCGAACATGATCGACGACATGACCGCGGCGATGGCGAGAGCCATGGACACGTCGCATATCCCGGTGAGATTTCCCACGACGCTGGCGCGGCCGCCCGTGTCGGTCCTGCTCTCGGTGCGGGAGGCGGGATCGTCTCGACGGGCATGAAGCAGACGCCGAACAAGCAAGCGAAGAAGCATATGACCATGGGCGCGGCGCGACAACGCTGGTCGCCGTTG]
[+] EMBL CB619086 [TCTTTTTAAGAATGTAGCAGCAACTTTGTTAATCAAATTAATCCTTACTACTTTCAAAATTACCCTTCAAATTATCCCCCAGTATAAAAAAATGTAAAATAATAGCAGAGCCTTTCCAGCCATCAGTGTGAACGGCACCGGTTGCGATGGCAATGTACAAATGGGTACAGAAGGAAGCGAAACTGGCACTCGTCTCCATCTTGGCGTGCGTCAGGAGCCTCCAAGCGAAGCCTGAAACAATGGCCGACGCCGCCAAGATGAGGAACCACTCGGTGAAGCTGCAGACCGAACCGCTGCTTATGGCTGGTATCGACACGGCCAGGAAGGCAGGAACCCGGTGAACGTGACCTTGGTCCGCTCAACGACGCCGGCTCTGCACCCTCTCCTCCTCCACCTCCGCCGCCGTCCGCCGCGGCGACATCGAATGCGTGCACCAGCAATATGAGGACGAGCGGAGACAGCAACGACAGCAGCGCCCGCAATTTCACGAGCGCGAACATGATCGACGACATGACCGCGGCGATGGCGAGAGCCATGGACACGTCGCATATCCCGGTGAGATTTCCCACGACGCTGGCGCGGCCGCCCGTGTCGGTCCTGCTCTCGGTGCGGGAGGCGGGATCGTCTCGACGGGCATGAAGCAGACGCCGAACAAGCAAGCGAAGAAGCATATGACCATGGGCGCGGCGCGACAACGCTGGTCGCCGTTG]
consensusID : consensus_7701#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 675 fasta sequence
[TTTTTTTTTTTTTTTTTGGACGGAAAGGGAATTGCAAATTTTACACTAAACCGCATAGCAGGTTATAATTATATCAGCTCTG-TTTTGCTTGTCAAAGTGATGCTCCAAGTTATCCCCCTTGTACCAAAAAAATAAAAATAAAAATCAGTGCAGAGCCTTTACGGCCATATCTGTGAATGGCACCGTTGCAATGGCAATGCAGAAATGTGTGCAGAAGGAAGCGAAATTGGCCGTCGTCCCCATCT-TGGCGTGCGTCAGGAGCCTCCAAGCGAAGCCTGAAACAATGGCGGATGCCGCAAAGATGAGGAACCAATCGGTGGAGCTGCAGAGTGAGCCAGTCCTGACAGCTGGTATCGACACGGCCAGAAACCCGGTGAACGTGACCTTGGTCAGCTCCATCGACGCCGGCTTTTCATCCTCTCCACCACCGACACCGCCACCGCCACCGCCACC-GGCGCTGATAACGACATCGTATGCACGCACCAGCAAGATGAGGAAGAGCGGTAACACCAACAGGAGCGCCCGCAGCTCCACGATCGCGTGCATGACGGACCACATGACCGCCNAGACAGCGAGAGCCATGACNATNTCAAATATCACGGTAAGGTTGGACACGATNACNACNTGGACGCCTACNTCGTTGCCATGGGCTTCTTCATCTGGGAGGGGCGGGAT]
[+] EMBL CA760306 [TTTTTTTTTTTTTTTTTGGACGGAAAGGGAATTGCAAATTTTACACTAAACCGCATAGCAGGTTATAATTATATCAGCTCTGCTTTTGCCTGTCAAAGGGATGCTCCAAGTTATCCCCCTTGTACCAAAAAAATAAAAATAAAAATCAGTGCAAAGCCTTTACGGCCATATCTGTGAATGGCACCGTTGCAATGGCAATGCAAAAATGTGTGCAGAAGGAAGCGAAATTGGCCGTCGTCCCCATCT TGGCGTGCGTCAGGAGCCTCCAAGCGAAGCCTGAAACAATGGCGGATGCCGCAAAGATGAGGAACCAATCGGTGGAGCTGCAAAGTGAGCCAGTCCTGACAGCTGGTATCGACACGGCCAGAAACCCGGTGAACGTGACCTTGGTCAGCTCCATCGACGCCGGCTTTTCATCCTCTCCACCACCGACACCGCCACCGCCACCGCCACC GGCGCTGATAACGACTTCGTATGCACGCACCAGCAAGATGAGGAAGAGCGGTAACACCAACAGGAGCGCCCGCAGCTCCACGATCGCGTGCATGACGGACCACATGACCGCCNAGACAGCGAGAGCCATGACNATNTCAAATATCACGGTAAGGTTGGACACGATNACNACNTGGACGCCTACNTCGTTGCCATGGGCTTCTTCATCTGGGAGGGGCGGGAT]
[-] EMBL BI811859 [ tttttttttGAA TGCAAATTTTACACTAAACCGCATAGCAGGTTATAATTATATCAGCTCTG CTTTGCTTGTCAAAGTGATGCTCCAAGTTATCCCCCTTGTACCAAAAAAATAAAAATAAAAATCAGTGCAGAGCCTTTACGGCCATATCTGTGAATGGCACCGTTGCAATGGCAATGCAGAAATGTGTGCAGAAGGAAGCGAAATTGGCCGTCGTCCCCATCT TGGCGTGCGTCAGGAGCCTCCAAGCGAAGCCTGAAACAATGGCGGATGCCGCAAAGATGAGGAACCAATCGGTGGAGCTGCAGAGTGAGCCAGTCCTGACAGCTGGTATCGACACGG CAGAAACCCGGTGAACGTGACCTTGGTCAGCTCCATCGACGCCGGCTTTTCATCCTCTCCA CACCGA ACCG CA CGGCACCG CACCGGGCGCTGATAACGACATCGTATGCACGCACCAGCAAGATGAGGAAGAG ]
[-] EMBL BQ909016 [ tttttt TTTTGCTTGTCAAAGTGATGCTCCAAGTTATCCCCCTTGTACCAAAAAAATAAAAATAAAAATCAGTGCAGAGCCTTTACGGCCATATCTGTGAATGGCACCGTTGCAATGGCAATGCAGAAATGTGTGCAGAAGGAAGCGAAATTGGCCGTCGTCCCCATCTGTGGCGTGCGTCAGGAGCCTCCAAGCGAAGCCTGAAACAATGGCGGATGCCGCAAAGATGAGGAACCAATCGGTGGAGCTGCAGAGTGAGCCAGTCCTGACAGCTGGTATCGACACGGCCAGAAACCCGGTGAACGTGACCTTGGTCAGCTCCATCGACGCCGGCTTTTCATCCTCTCCACCACCGACACCGCCACCGCCACCGCCACC GGCGCTGATAACGACATCGTATGCACGCACCAGCAAGATGAGGAAGAGCGGTAACACCAACAGGAGCGCCCGCAGCTCCACGATCGCGTGCATGACGGACCACATGACCGCCGAGACAGCGAGAGCCATGACGATGTCCAATATCACGGAAAGGT ]
consensusID : consensus_7701#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence
[TCCTGTCACTGAAGAGAACATTTTTCTGGACCAAACATCCAAACCCAACTAAAGGGTTATTAATTTTTGCCTGTCAAAATAACCCTCCAAATTACCCTGTAGTACAAACAAATAATCAGTGCAGAGCTTGTCCGGCCATAACTGTAAATGGCACCGTTGCAAGCACGATGCACAAATGCGTGCAGAAGGAAGCTACATTGGCACTTTTCCCAACTTTGGCCTGCGTCAGGAGCCTCCAAGCGAAGCCCGAAACAATGGCCGACGCTGCAAAGATGAGGAACCACTGGGTGGACGTGCTGAGCGGGCCACGGCTGGTCGTCCTGGCAGATATCGCCACGGTCAGGAACCCGGTGAACGCGACCTTGCTCAGCTCCAGCGACGCCGGCTTCACGA]
[+] EMBL CB676952 [TCCTGTCACTGAAGAGAACATTTTTCTGGACCAAACATCCAAACCCAACTAAAGGGTTATTAATTTTTGCCTGTCAAAATAACCCTCCAAATTACCCTGTAGTACAAACAAATAATCAGTGCAGAGCTTGTCCGGCCATAACTGTAAATGGCACCGTTGCAAGCACGATGCACAAATGCGTGCAGAAGGAAGCTACATTGGCACTTTTCCCAACTTTGGCCTGCGTCAGGAGCCTCCAAGCGAAGCCCGAAACAATGGCCGACGCTGCAAAGATGAGGAACCACTGGGTGGACGTGCTGAGCGGGCCACGGCTGGTCGTCCTGGCAGATATCGCCACGGTCAGGAACCCGGTGAACGCGACCTTGCTCAGCTCCAGCGACGCCGGCTTCACGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7701#1 TTTTTTTTTTTTTTTTTGGACGGAAAGGGAATTGCAAATTTTACACTAAAC-CGCATAGC 59
consensus_7701#2 -----------TCCTGTCACTGAAGAGAACATTT----TTCTGGACCAAACATCCAAACC 45
consensus_7701#0 -------------------------------------TCTTTTTAAGAATGTAGCAGCAA 23
* * * ** **
consensus_7701#1 AGGTTATAATTATATCAGCTCTGTTTTGCTTGTCAAAGTGATGCTCCAAGTTATCCCCCT 119
consensus_7701#2 CAACTAAAGGGTTATTAATT----TTTGCCTGTCAAAATAACCCTCCAAATTACCC---- 97
consensus_7701#0 CTTTGTTAATCAAATTAATCCT-TACTACTT-TCAAAATTACCCTTCAAATTATCC---- 77
* ** * * * * ***** * * ** *** *** **
consensus_7701#1 TGTACCAAAAAAATAAAAATAAAAATCAGTGCAGAGCCTTTACGGCCATATCTGTGAATG 179
consensus_7701#2 TGTAGTACAAACA-------AATAATCAGTGCAGAGCTTGTCCGGCCATAACTGTAAATG 150
consensus_7701#0 CCCAGTATAAAAA---AATGTAAAATAATAGCAGAGCCTTTCCAGCCATCAGTGTGAACG 134
* * *** * * *** * ******* * * * ***** *** ** *
consensus_7701#1 GCACCG-TTGCAATGGCAATGCAGAAATGTGTGCAGAAGGAAGCGAAATTGGCCGTCGTC 238
consensus_7701#2 GCACCG-TTGCAAGCACGATGCACAAATGCGTGCAGAAGGAAGCTACATTGGCACTTTTC 209
consensus_7701#0 GCACCGGTTGCGATGGCAATGTACAAATGGGTACAGAAGGAAGCGAAACTGGCACTCGTC 194
****** **** * * *** * ***** ** *********** * * **** * **
consensus_7701#1 CCCATCTTGGCGTGCGTCAGGAGCCTCCAAGCGAAGCCTGAAACAATGGCGGATGCCGCA 298
consensus_7701#2 CCAACTTTGGCCTGCGTCAGGAGCCTCCAAGCGAAGCCCGAAACAATGGCCGACGCTGCA 269
consensus_7701#0 TCCATCTTGGCGTGCGTCAGGAGCCTCCAAGCGAAGCCTGAAACAATGGCCGACGCCGCC 254
* * ***** ************************** *********** ** ** **
consensus_7701#1 AAGATGAGGAACCAATCGGTGGAGCTGCAGAGTGAGCCA------GTCCTGACAGCTGGT 352
consensus_7701#2 AAGATGAGGAACCACTGGGTGGACGTGCTGAGCGGGCCACGGCTGGTCGTCCTGGCAGAT 329
consensus_7701#0 AAGATGAGGAACCACTCGGTGAAGCTGCAGACCGAACCGC------TGCTTATGGCTGGT 308
************** * **** * *** ** * ** * * ** * *
consensus_7701#1 ATCGACACGGCCAGAAA--------CCCGGTGAACGTGACCTTGGTCAGCTCCATCGACG 404
consensus_7701#2 ATCGCCACGGTCAGGAA--------CCCGGTGAACGCGACCTTGCTCAGCTCCAGCGACG 381
consensus_7701#0 ATCGACACGGCCAGGAAGGCAGGAACCCGGTGAACGTGACCTTGGTCCGCTC-AACGACG 367
**** ***** *** ** *********** ******* ** **** * *****
consensus_7701#1 CCGGCTTTTCATCCTCTCCACCACCGACACCGCCACCGCCACCGCCACCGGCGCTGATAA 464
consensus_7701#2 CCGGCTTCACGA------------------------------------------------ 393
consensus_7701#0 CCGGCTCTGCACCCTCTCCTCCTCCACCTCCGCCGCCGTC--CGCCGC----------GG 415
****** *
consensus_7701#1 CGACATCGTATGCACGCACCAGCAAGATGAGGAAGAGCGGTAACACCAAC---AGGAGCG 521
consensus_7701#2 ------------------------------------------------------------
consensus_7701#0 CGACATCGAATGCGTGCACCAGCAATATGAGGACGAGCGGAGACAGCAACGACAGCAGCG 475
consensus_7701#1 CCCGCAGCTCCACGATCGCGTGCATGACGGACCACATGACCGCCNAGACAGCGAGAGCCA 581
consensus_7701#2 ------------------------------------------------------------
consensus_7701#0 CCCGCAATTTCACGAGCGCGAACATGATCGACGACATGACCGCGGCGATGGCGAGAGCCA 535
consensus_7701#1 TGACNATNTCAAATATCACGGTAAGGTTGGACACGATNACNACNTGGACGCCTACNTCGT 641
consensus_7701#2 ------------------------------------------------------------
consensus_7701#0 TGGACACGTCGCATATCCCGGTGAGATTTCCCACGACGCTGGCGCGGCCGCCCGTGTCG- 594
consensus_7701#1 TGCCATGGGCTTCTTCATCTGGGAGGGGCGGGAT-------------------------- 675
consensus_7701#2 ------------------------------------------------------------
consensus_7701#0 -GTCCTGCTCTCGGTGCGGGAGGCGGGATCGTCTCGACGGGCATGAAGCAGACGCCGAAC 653
consensus_7701#1 ---------------------------------------------------------
consensus_7701#2 ---------------------------------------------------------
consensus_7701#0 AAGCAAGCGAAGAAGCATATGACCATGGGCGCGGCGCGACAACGCTGGTCGCCGTTG 710
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||