cluster # 7703

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Oryza sativa
cluster # 7703 cluster # 7703 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7703#0 length = 826 sequences # 4

consensus_7703#1 length = 366 sequences # 1

consensusID : consensus_7703#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 826
fasta sequence

                              [AATAAGATCTCAGCGGAGGAGGAGACGAGGGGGAGGGAGACCCAGCGAGGGAGGAGAGGAGGATTCCGAGCGCTGCAGCCAGCCATGGCGAAGCAAGGGGTGAAGAAGACGAGGGACGCGAACAAGAAGCGGATGGACCTCATCCTGCGCCTAATCCTCGCGGCCAACGTTATTTACATAGTAGTGAGAATGGCTGTAATGCATTCGTCTTTCACCTGGAAGCATTGGATTGGTCTTGCTGTGACATCTGCTGCATATTTTCTGCCGTACAAGCAACTTGCCAATATGTCAGAGCCAGAATACTCTGAGAATGGAGAGTTAATTAATGCTGGTTATGACTTGNACGCTGGTGGAATGTCCGAATATTTACAAGATGTGATATATTATCACTCTCTTTGTGCAGCTGATGTCTATTTTTTCTGATAAATTTTGGTGGACATATTTGGTGATTCCAGCTTATGGTGGATACAAGATTTCCGGTCTGTTGAGAGGAGCATTTTTCGGTGGTAGTTCAGAGGGCGAAGAAGAGGATGAGAAGACCCGAAAGAAAAGGGAGAAGATGGAGAAGAAGGCATCTAGGGGGAAGATTATCAAAACCAGGACTCGTTGATGGCACATGTAGTGTATCGGGGCTCGTTGATGGCTCATGTGTATTATTGTTTGAAGGGTAGGTTTGCTTTACATGGCTGTCCAACTGAAATGTAAGCTGTCGGGCAGAATTGTTTCATGAATTATTCGATCATTTGCCCCAGCAGCTTAGTAGTAGCACAAATTTGAACTAATCCTCTTAACTTATCGATACCAGCATTATCAATGAGCAGCTCTC]

[+] EMBL C73629               [AATAAGATCTCAGCGGAGGAGGAGACGAGGGGGAGGGAGACCCAGCGAGGGAGGAGAGGAGGATTCCGAGCGCTGCAGCCAGCCATGGCGAA CAAGGGGTGAAGAAGACGAGGGACGCGAACAAGAAGCGGATGGACCTCATCCTGCGCCTAATCCTCGCGGCCAACGTTATTTACATAGTAGTGAGAATGGCTGTAATGCATTCGTCTTTCACCTGGAAGCATTGGATTGGTCTTGCTGTGACATCTGCTGCATATTTTCTGCCGTACAAGCAACTTGCCAATATGTCAGAGCCAGAATACTCTGAGAATGGAGAGTTAATTAATGCTGGTTATGACTTGNACGCTGGTGGAATGTCCGAATATTTACAAGATGTGATATATTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK101444             [                                          CAGCGAGGGAGGAGAGGAGGATTCCGAGCGCTGCAGCCAGCCATGGCGAAGCAAGGGGTGAAGAAGACGAGGGACGCGAACAAGAAGCGGATGGACCTCATCCTGCGCCTAATCCTCGCGGCCAACGTTATTTACATAGTAGTGAGAATGGCTGTAATGCATTCGTCTTTCACCTGGAAGCATTGGATTGGTCTTGCTGTGACATCTGCTGCATATTTTCTGCCGTACAAGCAACTTGCCAATATGTCAGAGCCAGAATACTCTGAGAATGGAGAGTTAATTAATGCTGGTTATGACTTGAACGCTGGTGGAATGTCCGAATATTTACAAGATGTGATATA TATCACTCTCTTTGTGCAGCTGATGTCTATTTTTTCTGATAAATTTTGGTGGACATATTTGGTGATTCCAGCTTATGGTGGATACAAGATTTCCGGTCTGTTGAGAGGAGCATTTTTCGGTGGTAGTTCAGAGGGCGAAGAAGAGGATGAGAAGACCCGAAAGAAAAGGGAGAAGATGGAGAAGAAGGCATCTAGGGGGAAGATTATCAAAACCAGGACTCGTTGATGGCACATGTAGTGTATCGGGGCTCGTTGATGGCTCATGTGTATTATTGTTTGAAGGGTAGGTTTGCTTTACATGGCTGTCCAACTGAAATGTAAGCTGTCGGGCAGAATTGTTTCATGAATTATTCGATCATTTGCCCCAGCAGCTTAGTAGTAGCACAAATTTGAACTAATCCTCTTAACTTATCGATACCAGCATTATCAATGAGCAGCTCT ]
[+] EMBL CB000089             [                                                                         TGCAGCCAGCCATGGCGAAGCAAGGGGTGAAGAAGACGAGGGACGCGAACAAGAAGCGGATGGACCTCATCCTGCGCCTAATCCTCGCGGCCAACGTGAGGGGCATAGTAGTGAGAATGGCTGTAATGCATTCGTCTTTCACCTGGAAGCATTGGATTGGTCTTGCTGTGACAGCTGCTGCATATTTTCTGCCGTACAAGCAAGTTGCCAATATGGCAGAGCCAGAATACgcg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB966475             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CCGTAAGAAAAGGGAGAAGATGGAGAAGAAGGCATCTAGGGGGAAGATTATCCAAACCAGGACTCGTTGATGGCACATGTAGTGTATCGGGGCTCGTTGATGGCTCATGTGTATTATTGTTTGAAGGGTAGGTTTGCTTTACATGGCTGTCCCACTGAAATGTAAGCTGTCGGGCAGAATTGTTTCATGAATTATTCGATCATTTGCCCCCCCCGCTTAGTAGTAGCACCAATTTGAACTAATCCTCTTAACTTATCGATACCCGCCTTATCCATGAGCAGCTCTC]




>consensus_7703#0
AATAAGATCTCAGCGGAGGAGGAGACGAGGGGGAGGGAGACCCAGCGAGGGAGGAGAGGA
GGATTCCGAGCGCTGCAGCCAGCCATGGCGAAGCAAGGGGTGAAGAAGACGAGGGACGCG
AACAAGAAGCGGATGGACCTCATCCTGCGCCTAATCCTCGCGGCCAACGTTATTTACATA
GTAGTGAGAATGGCTGTAATGCATTCGTCTTTCACCTGGAAGCATTGGATTGGTCTTGCT
GTGACATCTGCTGCATATTTTCTGCCGTACAAGCAACTTGCCAATATGTCAGAGCCAGAA
TACTCTGAGAATGGAGAGTTAATTAATGCTGGTTATGACTTGNACGCTGGTGGAATGTCC
GAATATTTACAAGATGTGATATATTATCACTCTCTTTGTGCAGCTGATGTCTATTTTTTC
TGATAAATTTTGGTGGACATATTTGGTGATTCCAGCTTATGGTGGATACAAGATTTCCGG
TCTGTTGAGAGGAGCATTTTTCGGTGGTAGTTCAGAGGGCGAAGAAGAGGATGAGAAGAC
CCGAAAGAAAAGGGAGAAGATGGAGAAGAAGGCATCTAGGGGGAAGATTATCAAAACCAG
GACTCGTTGATGGCACATGTAGTGTATCGGGGCTCGTTGATGGCTCATGTGTATTATTGT
TTGAAGGGTAGGTTTGCTTTACATGGCTGTCCAACTGAAATGTAAGCTGTCGGGCAGAAT
TGTTTCATGAATTATTCGATCATTTGCCCCAGCAGCTTAGTAGTAGCACAAATTTGAACT
AATCCTCTTAACTTATCGATACCAGCATTATCAATGAGCAGCTCTC

consensusID : consensus_7703#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [GAGCGCTGCAGCCAGCCATGNNNANAANNGGGTGAAGAAGACGAGGGACGCGAACAAGAAGCGGATGGACCTCATCCTGCGCCTAATCCTCGCGGCCAACGTTATTTACATAGTAGTGAGAATGGCTGTAATGCATTCGTCTTTCACCTGGAAGCATTGGATTGGTCTTGCTGTGACATCTGCTGCATATTTTCTGCCGTACAAGCAACTTGCCAATATGTCAGAGCCAGAATACTCTGAGAATGGAGAGTTAATTAATGCTGGTTATGACTTGAACGCTGGTGGAATGTCCGAGTAAGGAAAACACAATTGTTTTTAATTATTCTACTTGAAAATGAATTATTGGATATTTTCCATGGGAAAATT]

[+] EMBL OSS14391A            [GAGCGCTGCAGCCAGCCATGNNNANAANNGGGTGAAGAAGACGAGGGACGCGAACAAGAAGCGGATGGACCTCATCCTGCGCCTAATCCTCGCGGCCAACGTTATTTACATAGTAGTGAGAATGGCTGTAATGCATTCGTCTTTCACCTGGAAGCATTGGATTGGTCTTGCTGTGACATCTGCTGCATATTTTCTGCCGTACAAGCAACTTGCCAATATGTCAGAGCCAGAATACTCTGAGAATGGAGAGTTAATTAATGCTGGTTATGACTTGAACGCTGGTGGAATGTCCGAGTAAGGAAAACACAATTGTTTTTAATTATTCTACTTGAAAATGAATTATTGGATATTTTCCATGGGAAAATT]




>consensus_7703#1
GAGCGCTGCAGCCAGCCATGNNNANAANNGGGTGAAGAAGACGAGGGACGCGAACAAGAA
GCGGATGGACCTCATCCTGCGCCTAATCCTCGCGGCCAACGTTATTTACATAGTAGTGAG
AATGGCTGTAATGCATTCGTCTTTCACCTGGAAGCATTGGATTGGTCTTGCTGTGACATC
TGCTGCATATTTTCTGCCGTACAAGCAACTTGCCAATATGTCAGAGCCAGAATACTCTGA
GAATGGAGAGTTAATTAATGCTGGTTATGACTTGAACGCTGGTGGAATGTCCGAGTAAGG
AAAACACAATTGTTTTTAATTATTCTACTTGAAAATGAATTATTGGATATTTTCCATGGG
AAAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7703#0      AATAAGATCTCAGCGGAGGAGGAGACGAGGGGGAGGGAGACCCAGCGAGGGAGGAGAGGA 60
consensus_7703#1      ------------------------------------------------------------
                                                                                  

consensus_7703#0      GGATTCCGAGCGCTGCAGCCAGCCATGGCGAAGCAAGGGGTGAAGAAGACGAGGGACGCG 120
consensus_7703#1      -------GAGCGCTGCAGCCAGCCATGNNNANA-ANNGGGTGAAGAAGACGAGGGACGCG 52
                             ********************   *   *  ***********************

consensus_7703#0      AACAAGAAGCGGATGGACCTCATCCTGCGCCTAATCCTCGCGGCCAACGTTATTTACATA 180
consensus_7703#1      AACAAGAAGCGGATGGACCTCATCCTGCGCCTAATCCTCGCGGCCAACGTTATTTACATA 112
                      ************************************************************

consensus_7703#0      GTAGTGAGAATGGCTGTAATGCATTCGTCTTTCACCTGGAAGCATTGGATTGGTCTTGCT 240
consensus_7703#1      GTAGTGAGAATGGCTGTAATGCATTCGTCTTTCACCTGGAAGCATTGGATTGGTCTTGCT 172
                      ************************************************************

consensus_7703#0      GTGACATCTGCTGCATATTTTCTGCCGTACAAGCAACTTGCCAATATGTCAGAGCCAGAA 300
consensus_7703#1      GTGACATCTGCTGCATATTTTCTGCCGTACAAGCAACTTGCCAATATGTCAGAGCCAGAA 232
                      ************************************************************

consensus_7703#0      TACTCTGAGAATGGAGAGTTAATTAATGCTGGTTATGACTTGNACGCTGGTGGAATGTCC 360
consensus_7703#1      TACTCTGAGAATGGAGAGTTAATTAATGCTGGTTATGACTTGAACGCTGGTGGAATGTCC 292
                      ****************************************** *****************

consensus_7703#0      GAATATTTACAAGATG-TGATATATTATCACTCTCTTTGTGCA---GCTGATGTCTATTT 416
consensus_7703#1      GAGTAAGGAAAACACAATTGTTTTTAATTATTCTACTTGAAAATGAATTATTGGATATTT 352
                      ** **   * ** *   *  * * * ** * ***  ***   *     *  **  *****

consensus_7703#0      TTTCTGATAAATTTTGGTGGACATATTTGGTGATTCCAGCTTATGGTGGATACAAGATTT 476
consensus_7703#1      TCCATGGGAAAATT---------------------------------------------- 366
                      *   **  *** **                                              

consensus_7703#0      CCGGTCTGTTGAGAGGAGCATTTTTCGGTGGTAGTTCAGAGGGCGAAGAAGAGGATGAGA 536
consensus_7703#1      ------------------------------------------------------------
                                                                                  

consensus_7703#0      AGACCCGAAAGAAAAGGGAGAAGATGGAGAAGAAGGCATCTAGGGGGAAGATTATCAAAA 596
consensus_7703#1      ------------------------------------------------------------
                                                                                  

consensus_7703#0      CCAGGACTCGTTGATGGCACATGTAGTGTATCGGGGCTCGTTGATGGCTCATGTGTATTA 656
consensus_7703#1      ------------------------------------------------------------
                                                                                  

consensus_7703#0      TTGTTTGAAGGGTAGGTTTGCTTTACATGGCTGTCCAACTGAAATGTAAGCTGTCGGGCA 716
consensus_7703#1      ------------------------------------------------------------
                                                                                  

consensus_7703#0      GAATTGTTTCATGAATTATTCGATCATTTGCCCCAGCAGCTTAGTAGTAGCACAAATTTG 776
consensus_7703#1      ------------------------------------------------------------
                                                                                  

consensus_7703#0      AACTAATCCTCTTAACTTATCGATACCAGCATTATCAATGAGCAGCTCTC 826
consensus_7703#1      --------------------------------------------------