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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7715#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1471 fasta sequence
[CGTGCCGCCGCCGCCGCCGCCGCTTCATCCCGACGCCGAAAGCCCGAAACCTAAACACCTCCTCTTCCTCGCACGCCCATCTCCGGATTCCAACCAAATCTCCGGGATGGCCTCGACCTGCTTCCGCGCCGCCGNCCGCATGGNCTCCTCCGCCTGCCGCTCGGCGGNCTCCCGCTCAATCCCCTCCGCCGCGCGGCGCGGCGCCCCTCGAATNCTGCAGGCTGCCGGTGGAGCTCGGGTGCAGCGCGGGGTTGTCGCTGCTGCCGCTGCACAGCGCGGTGGCGGCGGCGAGGCTGACGTCGCGGCTGAGCACGGCGTCGCGGAGCTGCTGCGCGCTCTCTCAGGGTACCCTCTGTCGCACCTATCCCGGACTTTAACATCAATCAATACCATCGATGAGATGCACTTGCCTGTCTTTTCCGTTTGGGTGAGAACCGTGCCCGTGCGTATTATTGTACCAGTACTTCATTTTCTTCGCCCGCTACTGGCGCAATTACTTGTTCATCTGCTGCTGTTTGTTTCGTCAATGTAATAGTTTTGCCCTCAACCAAGCGTTTTTGTGCTCAGCTCTCTTATTTGTGTGATTGATGTGTGACATAACTCTGTGCCGTTGTGAACATATAACGATTTCTATGCATACACTAATCATTTTCTCCTTTAGTGCACTAAAATAGTGTTGCATACATGATAGTGATACATCAACATTTTTACAGTACAATCCTTTTTTTCTTTGATGATCAACACACCATCACATCAATTTCATGTTGTATATAATAAGTCAAGAGATTCGCTTGTTAAGTTTTCTTTTTTTTTTTGATGAATTGAGGTCAATTGAGTAAGACATCTGGTTTCTGCAGGCACATGACTTGCTAGTTCTTGAAAGATTTTACCAGGAGCTTGCTGTTTTGCTTCACAATCATCGAGAATGAGTGCCTTAACATGTCAAATTGTAATCAAGACTAGCGTTATGTTTTTTAAGCTAGAATCTTAGCTGCCTATGTTGAGGGGCAACATGATGGAATAAAGTAACATCATTTTACATGTTTTGCGTAATAGTTGGCTGTTTGCCCAAGTCTATTTGTCTGTGAGATATTTAATACAATCTACGTAATTTTCCTATGGCATTTGCAATTTTTTCCTAGACTTTCCTGTTTGCATGGATGCATGCTCGTTTGATTTTTTCTTTCAACAAAGAATTTTATAACATGGTTGCCATTTTAGTTTACAATATGATCATTCTTCTCTTCTCAGATGAAAGTGATGGTACGTGAAACATTTACGCAATGTCTTAAAGGTGGTGCTTGGCTGTTATGGCAATGCTGCACATGTATTACTGCGACATCCGCCTTAGTCATAGAATTTATGGTTTTGACACTCCGGATTTTGTAAAAGTTATTTTGGTAGTGTCAGGGATAAACATCAATGCTGTATGCTTCCACACTTATAAAGTTATAATGAAGCAATTGAGATA]
[+] EMBL AU223325 [CGTGCCGCCGCCGCCGCCGCCGCTTCATCCCGACGCCGAAAGCCCGAAACCTAAACACCTCCTCTTCCTCGCACGCCCATCTCCGGATTCCAACCAAATCTCCGGGATGGCCTCGACCTGCTTCCGCGCCGCCGNCCGCATGGNCTCCTCCGCCTGCCGCTCGGCGGNCTCCCGCTCAATCCCCTCCGCCGCGCGGCGCGGCGCCCCTCGAATNCTGCAGGCTGCC ]
[+] EMBL AK073923 [ GCCGAAAGCCCGAAACCTAAACACCTCCTCTTCCTCGCACGCCCATCTCCGGATTCCAACCAAATCTCCGGGATGGCCTCGACCTGCTTCCGCGCCGCCGCCCGCATGGCCTCCTCCGCCTGCCGCTCGGCGGCCTCCCGCTCAATCCCCTCCGCCGCGCGGCGCGGCGCCCCTCGCAT CTCCAGGCTGCCGGTGGAGCTCGGGTGCAGCGCGGGGTTGTCGCTGCTGCCGCTGCACAGCGCGGTGGCGGCGGCGAGGCTGACGTCGCGGCTGAGCACGGCGTCGCGGAGCTGCTGCGCGCTCTCTCAGGGTACCCTCTGTCGCACCTATCCCGGACTTTAACATCAATCAATACCATCGATGAGATGCACTTGCCTGTCTTTTCCGTTTGGGTGAGAACCGTGCCCGTGCGTATTATTGTACCAGTACTTCATTTTCTTCGCCCGCTACTGGCGCAATTACTTGTTCATCTGCTGCTGTTTGTTTCGTCAATGTAATAGTTTTGCCCTCAACCAAGCGTTTTTGTGCTCAGCTCTCTTATTTGTGTGATTGATGTGTGACATAACTCTGTGCCGTTGTGAACATATAACGATTTCTATGCATACACTAATCATTTTCTCCTTTAGTGCACTAAAATAGTGTTGCATACATGATAGTGATACATCAACATTTTTACAGTACAATCCTTTTTTTCTTTGATGATCAACACACCATCACATCAATTTCATGTTGTATATAATAAGTCAAGAGATTCGCTTGTTAAGTTTTCTTTTTTTTTTTGATGAATTGAGGTCAATTGAGTAAGACATCTGGTTTCTGCAGGCACATGACTTGCTAGTTCTTGAAAGATTTTACCAGGAGCTTGCTGTTTTGCTTCACAATCATCGAGAATGAGTGCCTTAACATGTCAAATTGTAATCAAGACTAGCGTTATGTTTTTTAAGCTAGAATCTTAGCTGCCTATGTTGAGGGGCAACATGATGGAATAAAGTAACATCATTTTACATGTTTTGCGTAATAGTTGGCTGTTTGCCCAAGTCTATTTGTCTGTGAGATATTTAATACAATCTACGTAATTTTCCTATGGCATTTGCAATTTTTTCCTAGACTTTCCTGTTTGCATGGATGCATGCTCGTTTGATTTTTTCTTTCAACAAAGAATTTTATAACATGGTTGCCATTTTAGTTTACAATATGATCATTCTTCTCTTCTCAGATGAAAGTGATGGTACGTGAAACATTTACGCAATGTCTTAAAGGTGGTGCTTGGCTGTTATGGCAATGCTGCACATGTATTACTGCGACATCCGCCTTAGTCATAGAATTTATGGTTTTGACACTCCGGATTTTGTAAAAGTTATTTTGGTAGTGTCAGGGATAAACATCAATGCTGTATGCTTCCACACTTATAAAGTTATAATGAAGCAATTGAGATA]
consensusID : consensus_7715#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence
[CTTCCGCGCCGCCGCCCGCATGGCCTCCTCCGCCTGCCGCTCGGCGGCCTCCCGCTCAATCCCCTCCGCCGCGCGGCGCGGCGCCCCTCGCATCTCCAGGCTGCCGGTGGAGCTCGGGTGCAGCGCGGGGTTGTCGCTGCTGCCGCTGCACAGCGCGGTGGCGGCGGCGAGGCTGACGTCGCGGCTGAGCACGGCGTCGCGGAGCTGCTGCGCGCTCTCTCAGGAGATGGGTCAGTCTGTCCCAAGGTGATAAATGCTGGAAGACCTGCTCATGTCGTGCTATCAGACAATTGATTTTGTAGAGTGAACTAAATTGGTTTCTGTGTTGCCTGATTTTACCCCTCCTAGAACTGTGGTTCTGTTGGACCTTTCAAAGTTTTTGAGATAATGCCCCTTGATATCATTTGTTAAAAACAATCAAGGACATAATGCAAAAGCCCAAGCTGTATTTCTTAGTTACAAAAAAAA]
[+] EMBL CA756902 [CTTCCGCGCCGCCGCCCGCATGGCCTCCTCCGCCTGCCGCTCGGCGGCCTCCCGCTCAATCCCCTCCGCCGCGCGGCGCGGCGCCCCTCGCATCTCCAGGCTGCCGGTGGAGCTCGGGTGCAGCGCGGGGTTGTCGCTGCTGCCGCTGCACAGCGCGGTGGCGGCGGCGAGGCTGACGTCGCGGCTGAGCACGGCGTCGCGGAGCTGCTGCGCGCTCTCTCAGGAGATGGGTCAGTCTGTCCCAAGGTGATAAATGCTGGAAGACCTGCTCATGTCGTGCTATCAGACAATTGATTTTGTAGAGTGAACTAAATTGGTTTCTGTGTTGCCTGATTTTACCCCTCCTAGAACTGTGGTTCTGTTGGACCTTTCAAAGTTTTTGAGATAATGCCCCTTGATATCATTTGTTAAAAACAATCAAGGACATAATGCAAAAGCCCAAGCTGTATTTCTTAGTTACAAAAAAAA]
consensusID : consensus_7715#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence
[CATGGCCTCCTCCGCCTGCCGCTCGGCGGCCTCCCGCTCAATCCCCTCCGCCGCGCGGCGCGGCGCCCCTCGCATCTCCAGGCTGCCGGTGGAGCTCGGGTGCAGCGCGGGGTTGTCGCTGCTGCCGCTGCACAGCGCGGTGGCGGCGGCGAGGCTGACGTCGCGGCTGAGCACGGCGTCGCGGAGCTGCTGCGCGCTCTCTCAGGATGAAAGTGATGGTACGTGAAACATTTACGCAATGTCTTAAAGGTGGTGCTTGGCTGTTATGGCAATGCTGCACATGTATTACTGCGACATCCGCCTTAGTCATAGAATTTATGGTTTTGACACTCCGGATTTTGTAAAAGTTATTTTGGTAGTGTCAGGGATAAACATCAATGCTGTATGCTTCCACACTTATAAAGTTATAATGAAGCAATTGAGATATTCAAAAA]
[+] EMBL AU223326 [CATGGCCTCCTCCGCCTGCCGCTCGGCGGCCTCCCGCTCAATCCCCTCCGCCGCGCGGCGCGGCGCCCCTCGCATCTCCAGGCTGCCGGTGGAGCTCGGGTGCAGCGCGGGGTTGTCGCTGCTGCCGCTGCACAGCGCGGTGGCGGCGGCGAGGCTGACGTCGCGGCTGAGCACGGCGTCGCGGAGCTGCTGCGCGCTCTCTCAGGATGAAAGTGATGGTACGTGAAACATTTACGCAATGTCTTAAAGGTGGTGCTTGGCTGTTATGGCAATGCTGCACATGTATTACTGCGACATCCGCCTTAGTCATAGAATTTATGGTTTTGACACTCCGGATTTTGTAAAAGTTATTTTGGTAGTGTCAGGGATAAACATCAATGCTGTATGCTTCCACACTTATAAAGTTATAATGAAGCAATTGAGATATTCAAAAA]
consensusID : consensus_7715#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence
[CGTGCCGCCGNCGCCGCCGCCGCTTCATCCCGACGCCGAAAGCCCGAAACCTAAACACCTCCTCTTCCTCGCACGNCCATCTCCGGATTCCAACCAAATCTCCGGGATGGCCTCGACCTGCTTCCGCGCCGNCGNCCGCATGGCCTCCTCCGNCTGCCGCTCGGCGCCTCCCGCTCAATCCCCTCCGNCGCGCGCGNGGGCCCCTCGCATNTCCAGGCTGCCGTTGGAGCTCGGGTGAAGNGCGTNGGTTGTCGTTGTTGCCGTTGNACAGGCGGTGGCGTGCGTC]
[+] EMBL AU161832 [CGTGCCGCCGNCGCCGCCGCCGCTTCATCCCGACGCCGAAAGCCCGAAACCTAAACACCTCCTCTTCCTCGCACGNCCATCTCCGGATTCCAACCAAATCTCCGGGATGGCCTCGACCTGCTTCCGCGCCGNCGNCCGCATGGCCTCCTCCGNCTGCCGCTCGGCGCCTCCCGCTCAATCCCCTCCGNCGCGCGCGNGGGCCCCTCGCATNTCCAGGCTGCCGTTGGAGCTCGGGTGAAGNGCGTNGGTTGTCGTTGTTGCCGTTGNACAGGCGGTGGCGTGCGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7715#0 CGTGCCGCCGCCGCCGCCGCCGCTTCATCCCGACGCCGAAAGCCCGAAACCTAAACACCT 60
consensus_7715#3 CGTGCCGCCGNCGCCGCCGCCGCTTCATCCCGACGCCGAAAGCCCGAAACCTAAACACCT 60
consensus_7715#1 ------------------------------------------------------------
consensus_7715#2 ------------------------------------------------------------
consensus_7715#0 CCTCTTCCTCGCACGCCCATCTCCGGATTCCAACCAAATCTCCGGGATGGCCTCGACCTG 120
consensus_7715#3 CCTCTTCCTCGCACGNCCATCTCCGGATTCCAACCAAATCTCCGGGATGGCCTCGACCTG 120
consensus_7715#1 ------------------------------------------------------------
consensus_7715#2 ------------------------------------------------------------
consensus_7715#0 CTTCCGCGCCGCCGNCCGCATGGNCTCCTCCGCCTGCCGCTCGGCGGNCTCCCGCTCAAT 180
consensus_7715#3 CTTCCGCGCCGNCGNCCGCATGGCCTCCTCCGNCTGCCGCTCGGCG-CCTCCCGCTCAAT 179
consensus_7715#1 CTTCCGCGCCGCCGCCCGCATGGCCTCCTCCGCCTGCCGCTCGGCGGCCTCCCGCTCAAT 60
consensus_7715#2 ------------------CATGGCCTCCTCCGCCTGCCGCTCGGCGGCCTCCCGCTCAAT 42
***** ******** ************* ************
consensus_7715#0 CCCCTCCGCCGCGCGGCGCGGCGCCCCTCGAATNCTGCAGGCTGCCGGTGGAGCTCGGGT 240
consensus_7715#3 CCCCTCCGNCGCGCG-CGNGG-GCCCCTCGCATN-TCCAGGCTGCCGTTGGAGCTCGGGT 236
consensus_7715#1 CCCCTCCGCCGCGCGGCGCGGCGCCCCTCGCATC-TCCAGGCTGCCGGTGGAGCTCGGGT 119
consensus_7715#2 CCCCTCCGCCGCGCGGCGCGGCGCCCCTCGCATC-TCCAGGCTGCCGGTGGAGCTCGGGT 101
******** ****** ** ** ******** ** * ********** ************
consensus_7715#0 GCAGCGCG-GGGTTGTCGCTGCTGCCGCTGCACAGCGCGGTGGCG-GCGGCGAGGCTGAC 298
consensus_7715#3 GAAGNGCGTNGGTTGTCGTTGTTGCCGTTGNACAG-GCGGTGGCGTGCGTC--------- 286
consensus_7715#1 GCAGCGCG-GGGTTGTCGCTGCTGCCGCTGCACAGCGCGGTGGCG-GCGGCGAGGCTGAC 177
consensus_7715#2 GCAGCGCG-GGGTTGTCGCTGCTGCCGCTGCACAGCGCGGTGGCG-GCGGCGAGGCTGAC 159
* ** *** ******** ** ***** ** **** ********* *** *
consensus_7715#0 GTCGCGGCTGAGCACGGCGTCGCGGAGCTGCTGCGCGCTCTCTCAGGGTACCCTCTGTCG 358
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 GTCGCGGCTGAGCACGGCGTCGCGGAGCTGCTGCGCGCTCTCTCAGGAGA---TGGGTCA 234
consensus_7715#2 GTCGCGGCTGAGCACGGCGTCGCGGAGCTGCTGCGCGCTCTCTCAGGATG---------A 210
consensus_7715#0 CACCTATCCCGGACTTTAACATCAATCAATACCATCGATGAGATGCACTTGCCTGTCTTT 418
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 GTCTGTCCCAAGGTGATAAATGCTGGAAGACCTGCTCATGTCGTGCTATCAGACAATTGA 294
consensus_7715#2 AAGTGATGGTACGTGAAACATTTACGCAATGTCTTAAAGGTGGTGCT------TGGCTGT 264
consensus_7715#0 TCCGTTTGGGTGAGAACCGTGCCCGTGCGTATTATTGTACCAGTACTTC---ATTTTCTT 475
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 TTTTGTAGAGTGAACTAAATTGGTTTCTGTGTTGCCTGATTTTACCCCT---CCTAGAAC 351
consensus_7715#2 TATGGC--AATGCTGCACATGTATTACTGCGACATCCGCCTTAGTCATAGAATTTATGGT 322
consensus_7715#0 CGCCCGCTACTGGCGCAATTACTTGTTCATCTGCTGCTGTTTGTTTCGTCAATGTAATAG 535
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 TGTGGTTCTGTTGGACCTTTCAAAGTTTTTGAGATAATGCCCCTTGATATCATTTGTTAA 411
consensus_7715#2 TTTGACACTCCGGATTTTGTAAAAGTTATTTTGGTAGTGTCAGGGATAAACATCAATGCT 382
consensus_7715#0 TTTTGCCCTCAACCAAGCGTTTTTGTGCTCAGCTCTCTTATTTGTGTGATTGATGTGTGA 595
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 AAACAATCAAGGACATAATGCAAAAGCCCAAGCTGTATTTCTTAGTTACAAAAAAAA--- 468
consensus_7715#2 GTATGCTTCCACACTTATAAAGTTATAATGAAGCAATTGAGATATTCAAAAA-------- 434
consensus_7715#0 CATAACTCTGTGCCGTTGTGAACATATAACGATTTCTATGCATACACTAATCATTTTCTC 655
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 ------------------------------------------------------------
consensus_7715#2 ------------------------------------------------------------
consensus_7715#0 CTTTAGTGCACTAAAATAGTGTTGCATACATGATAGTGATACATCAACATTTTTACAGTA 715
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 ------------------------------------------------------------
consensus_7715#2 ------------------------------------------------------------
consensus_7715#0 CAATCCTTTTTTTCTTTGATGATCAACACACCATCACATCAATTTCATGTTGTATATAAT 775
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 ------------------------------------------------------------
consensus_7715#2 ------------------------------------------------------------
consensus_7715#0 AAGTCAAGAGATTCGCTTGTTAAGTTTTCTTTTTTTTTTTGATGAATTGAGGTCAATTGA 835
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 ------------------------------------------------------------
consensus_7715#2 ------------------------------------------------------------
consensus_7715#0 GTAAGACATCTGGTTTCTGCAGGCACATGACTTGCTAGTTCTTGAAAGATTTTACCAGGA 895
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 ------------------------------------------------------------
consensus_7715#2 ------------------------------------------------------------
consensus_7715#0 GCTTGCTGTTTTGCTTCACAATCATCGAGAATGAGTGCCTTAACATGTCAAATTGTAATC 955
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 ------------------------------------------------------------
consensus_7715#2 ------------------------------------------------------------
consensus_7715#0 AAGACTAGCGTTATGTTTTTTAAGCTAGAATCTTAGCTGCCTATGTTGAGGGGCAACATG 1015
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 ------------------------------------------------------------
consensus_7715#2 ------------------------------------------------------------
consensus_7715#0 ATGGAATAAAGTAACATCATTTTACATGTTTTGCGTAATAGTTGGCTGTTTGCCCAAGTC 1075
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 ------------------------------------------------------------
consensus_7715#2 ------------------------------------------------------------
consensus_7715#0 TATTTGTCTGTGAGATATTTAATACAATCTACGTAATTTTCCTATGGCATTTGCAATTTT 1135
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 ------------------------------------------------------------
consensus_7715#2 ------------------------------------------------------------
consensus_7715#0 TTCCTAGACTTTCCTGTTTGCATGGATGCATGCTCGTTTGATTTTTTCTTTCAACAAAGA 1195
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 ------------------------------------------------------------
consensus_7715#2 ------------------------------------------------------------
consensus_7715#0 ATTTTATAACATGGTTGCCATTTTAGTTTACAATATGATCATTCTTCTCTTCTCAGATGA 1255
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 ------------------------------------------------------------
consensus_7715#2 ------------------------------------------------------------
consensus_7715#0 AAGTGATGGTACGTGAAACATTTACGCAATGTCTTAAAGGTGGTGCTTGGCTGTTATGGC 1315
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 ------------------------------------------------------------
consensus_7715#2 ------------------------------------------------------------
consensus_7715#0 AATGCTGCACATGTATTACTGCGACATCCGCCTTAGTCATAGAATTTATGGTTTTGACAC 1375
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 ------------------------------------------------------------
consensus_7715#2 ------------------------------------------------------------
consensus_7715#0 TCCGGATTTTGTAAAAGTTATTTTGGTAGTGTCAGGGATAAACATCAATGCTGTATGCTT 1435
consensus_7715#3 ------------------------------------------------------------
consensus_7715#1 ------------------------------------------------------------
consensus_7715#2 ------------------------------------------------------------
consensus_7715#0 CCACACTTATAAAGTTATAATGAAGCAATTGAGATA 1471
consensus_7715#3 ------------------------------------
consensus_7715#1 ------------------------------------
consensus_7715#2 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||