cluster # 7719

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Oryza sativa
cluster # 7719 cluster # 7719 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7719#0 length = 658 sequences # 2

consensus_7719#1 length = 559 sequences # 3

consensusID : consensus_7719#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 658
fasta sequence

                              [GCCCACAATTTGTGGGAACCCGTTCTAGGATAGGTTCCAATGGCACCTCAAGGATAACAGTAATGCTTGGTGCTGATTTCTATGAGACTGATCTGGAAAGAGGAGAACTGCTGGCTGAAGGAAAGGTTCCTATTGGAATCGGGGAGAATACAAAGATTCAGAACTGCATAATAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAGGGTGTACAGGAAGCAGATAGGACCTCTGAAGGCTTCTACATCCGATCAGGCATCACCATCGTATTAAAGAACTCGATAATTGCAGATGGATTAGTCATCTGAGGTGGAATAAAGCCCTCCCTAATCC-ACCAGAAAAAGCCAGCCATGACCATTTGCGGCAGGAATAGAATAAAATCATCAGAGCTCTTTGTTCTTAGTTGTGTACTTAGCATTCAAGAGCTTCTGCATGTCTGTAC-AAATCATTGTCTCGTGAATCTACCGTGTGTGTTTTAACACTAAACACATGGTCATGAAGCTTGAAAAAAAAAAC-AAATTTTATGAAAAAGGGTATTGGTTGTTCCATGTAATCTGCAGGCGAAGAAAACCTTACCTATCTACAGGTGTACTCTCTCCGTCAAAAAAAAAAAAACTTAATCTAGATGGGAATTTGACACAAC]

[+] EMBL BI800216             [GCCCACAATTTGTGGGAACCCGTTCTAGGATAGGTTCCAATGGCACCTCAAGGATAACAGTAATGCTTGGTGCTGATTTCTATGAGACTGATCTGGAAAGAGGAGAACTGCTGGCTGAAGGAAAGGTTCCTATTGGAATCGGGGAGAATACAAAGATTCAGAACTGCATAATAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAGGGTGTACAGGAAGCAGATAGGACCTCTGAAGGCTTCTACATCCGATCAGGCATCACCATCGTATTAAAGAACTCGATAATTGCAGATGGATTAGTCATCTGAGGTGGAATAAAGCCCTCCCTAATCC ACCAGAAAAAGCCAGCCATGACCATTTGCGGCAGGAATAGAATAAAATCATCAGAGCTCTTTGTTCTTAGTTGTGTACTTAGCATTCAAGAGCTTCTGCATGTCTGTAC AAATCATTGTCTCGTGAATCTACCGTGTGTGTTTTAACACTAAACACATGGTCATGAAGCTTGAAAAAAAAAAC AAATTTTATGAAAAA                                                                                                                ]
[+] EMBL AK105092             [                                                        ACAGTAATGCTTGGTGCTGATTTCTATGAGACTGATCTGGAAAGAGGAGAACTGCTGGCTGAAGGAAAGGTTCCTATTGGAATCGGGGAGAATACAAAGATTCAGAACTGCATAATAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAGGGTGTACAGGAAGCAGATAGGACCTCTGAAGGCTTCTACATCCGATCAGGCATCACCATCGTATTAAAGAACTCGATAATTGCAGATGGATTAGTCATCTGAGGTGGAATAAAGCCCTCCCTTATCCAACCAGAAAAAGCCAGCCATGACCATTTGCGGCAGGAATAGAATAAAATCATCAGAGCTCTTTGTTCTTAGTTGTGTACTTAGCATTCAAGAGCTTCTGCATGTCTGTACAAAATCATTGTCTCGTGAATCTACCGTGTGTGTTTTCACACTAAACACATGGTCATGAAGCTCGAAAAAAAAAACAAAATTTTATGATCTGGGGTATTGGTTGTTCCATGTAATCTGCAGGCGAAGAAAACCTTACCTATCTACAGGTGTACTCTCTCCGTCAAAAAAAAAAAAACTTAATCTAGATGGGAATTTGACACAAC]




>consensus_7719#0
GCCCACAATTTGTGGGAACCCGTTCTAGGATAGGTTCCAATGGCACCTCAAGGATAACAG
TAATGCTTGGTGCTGATTTCTATGAGACTGATCTGGAAAGAGGAGAACTGCTGGCTGAAG
GAAAGGTTCCTATTGGAATCGGGGAGAATACAAAGATTCAGAACTGCATAATAGACAAGA
ATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAGGGTGTACAGGAAGCAGATA
GGACCTCTGAAGGCTTCTACATCCGATCAGGCATCACCATCGTATTAAAGAACTCGATAA
TTGCAGATGGATTAGTCATCTGAGGTGGAATAAAGCCCTCCCTAATCCACCAGAAAAAGC
CAGCCATGACCATTTGCGGCAGGAATAGAATAAAATCATCAGAGCTCTTTGTTCTTAGTT
GTGTACTTAGCATTCAAGAGCTTCTGCATGTCTGTACAAATCATTGTCTCGTGAATCTAC
CGTGTGTGTTTTAACACTAAACACATGGTCATGAAGCTTGAAAAAAAAAACAAATTTTAT
GAAAAAGGGTATTGGTTGTTCCATGTAATCTGCAGGCGAAGAAAACCTTACCTATCTACA
GGTGTACTCTCTCCGTCAAAAAAAAAAAAACTTAATCTAGATGGGAATTTGACACAAC

consensusID : consensus_7719#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 559
fasta sequence

                              [GAATCCGTTCTAGGATAGGTTCCAATGTGCACCTCAAGGAT-A-CAGTAATGCTTGGTGCTGATTTCTATGAGACTGATCTGGAAAGAGGAGAACTGCTGG-CTGAAGGAAAGGTTCCTATTGGAATCGGGGAGAATACAAAGATTCAGAACTGCATAATAGACA-AGAATGCGAGGATAGGGAAGAA-TGTAACAATTTCCAACTCTGAGGGTGTACAGGAA-GCAGATAGGAC--CTCTGAAGGCTTTTACATCCGA-TCAGGCATCACCATCGTATTAAAGAACTCGATAATTGCA-GATGGATTAGTCATCTGAGGTGGAATAAAGCCCTCCCTTATCCAACCAGAAAAAGCCAGCCATGACCATTTGCGGCAGGAATAGAATAAAATCATCAGAGCTCTTTGTTCTTAGTTGTGTACTTAGCATTCAAGAGCTTCTGCATGTCTGTACAAAATCATTGTCTCGTGAATCTACCGTGTGTGTTTTCACACTAAACACATGGTCATGAAGCTCGAAAAAAAAAACAAAATTTTATGAAAAAAAAAAAAAAAAAAAACTCGAGACTA]

[-] EMBL CF326161             [GAATCCGTTCTAGGATAGGTTCCAATGTGCACCTCAAGGAT A CAGTAATGCTTGGTGCTGATTTCTATGAGACTGATCTGGAAAGAGGAGAACTGCTGG CTGAAGGAAAGGTTCCTATTGGAATCGGGGAGAATACAAAGATTCAGAACTGCATAATAGACA AGAATGCGAGGATAGGGAAGAA TGTAACAATTTCCAACTCTGAGGGTGTACAGGAA GCAGATAGGAC  CTCTGAAGGCTTTTACATCCGA TCAGGCATCACCATCGTATTAAAGAACTCGATAATTGCA GATGGATTAGTCATCTGAGGTGGAATAAAGCCCTCCCTTATCCAACCAGAAAAAGCCAGCCATGACCATTTGCGGCAGGAATAGAATAAAATCATCAGAGCTCTTTGTTCTTAGTTGTGTACTTAGCATTCAAGAGCTTCTGCATGTCTGTACAAAATCATTGTCTCGTGAATCTACCGTGTGTGTTTTCACACTAAACACATGGTCATGAAGCTCGAAAAAAAAAACAAAATTTTATGAAAAAAAAAAAAAAAAAAAACTCGAGACTA]
[+] EMBL BI799956             [                     CCAATGTCCCCCTCAAGGATCACCAGTAATGCTTGGT CTGATTTCTATGAGACTGATCTGGAAAGAGGAGAACTGCTGGCCTGAAGGAAAGGTTCCTATTGGAATCGGGGAGAATCCCAAGATTCAGAACTGCATAATAGACACAGAATGCGAGGATAGGGAAGAACTGTAACAATTTCCAACTCTGAGGGTGTACAGGAACGCAGATAGGACCTCTCTGAAGGCTTCTACATCCGACTCAGGCATCACCATCGTATTAAAGAACTCGATAATTGCACGATGGATTAGTCATCTGAGGTGGAATAAAGCCCTCCCTAATCCAACCAGAAAAAGCCAGCCATGACCATTTGCGGCAGGAATAGAATAAAATCATCAGAGCTCTTTGTTCTTAGTTGTGTACTTAGCATTCAAGAGCTTCTGCATGTCTGTACAAAATCCTTGTCTCGTGAATCTACCGTGTGTGTTTTAACACTAAACACATGGTCATGAAGCTTGAAAAAAAAAACCAAATTTTATGATCCAAAAAAAAAA                ]
[+] EMBL CF299955             [                                                                                                                                                                                                                                                                                                                                                                                                                       TTCTTAGTTGTGTACTTAGCATTCAAGAGCTTCTGCATGTCTGTACAAAATCATTGTCTCGTGAATCTACCGTGTGTGTTTTCACACTAAACACATGGTCATGAAGCTCGAAAAAAAAAACA                                        ]




>consensus_7719#1
GAATCCGTTCTAGGATAGGTTCCAATGTGCACCTCAAGGATACAGTAATGCTTGGTGCTG
ATTTCTATGAGACTGATCTGGAAAGAGGAGAACTGCTGGCTGAAGGAAAGGTTCCTATTG
GAATCGGGGAGAATACAAAGATTCAGAACTGCATAATAGACAAGAATGCGAGGATAGGGA
AGAATGTAACAATTTCCAACTCTGAGGGTGTACAGGAAGCAGATAGGACCTCTGAAGGCT
TTTACATCCGATCAGGCATCACCATCGTATTAAAGAACTCGATAATTGCAGATGGATTAG
TCATCTGAGGTGGAATAAAGCCCTCCCTTATCCAACCAGAAAAAGCCAGCCATGACCATT
TGCGGCAGGAATAGAATAAAATCATCAGAGCTCTTTGTTCTTAGTTGTGTACTTAGCATT
CAAGAGCTTCTGCATGTCTGTACAAAATCATTGTCTCGTGAATCTACCGTGTGTGTTTTC
ACACTAAACACATGGTCATGAAGCTCGAAAAAAAAAACAAAATTTTATGAAAAAAAAAAA
AAAAAAAAACTCGAGACTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7719#0      GCCCACAATTTGTGGGAACCCGTTCTAGGATAGGTTCCAATG-GCACCTCAAGGATAACA 59
consensus_7719#1      ---------------GAATCCGTTCTAGGATAGGTTCCAATGTGCACCTCAAGGATA-CA 44
                                     *** *********************** ************** **

consensus_7719#0      GTAATGCTTGGTGCTGATTTCTATGAGACTGATCTGGAAAGAGGAGAACTGCTGGCTGAA 119
consensus_7719#1      GTAATGCTTGGTGCTGATTTCTATGAGACTGATCTGGAAAGAGGAGAACTGCTGGCTGAA 104
                      ************************************************************

consensus_7719#0      GGAAAGGTTCCTATTGGAATCGGGGAGAATACAAAGATTCAGAACTGCATAATAGACAAG 179
consensus_7719#1      GGAAAGGTTCCTATTGGAATCGGGGAGAATACAAAGATTCAGAACTGCATAATAGACAAG 164
                      ************************************************************

consensus_7719#0      AATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAGGGTGTACAGGAAGCAGAT 239
consensus_7719#1      AATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAGGGTGTACAGGAAGCAGAT 224
                      ************************************************************

consensus_7719#0      AGGACCTCTGAAGGCTTCTACATCCGATCAGGCATCACCATCGTATTAAAGAACTCGATA 299
consensus_7719#1      AGGACCTCTGAAGGCTTTTACATCCGATCAGGCATCACCATCGTATTAAAGAACTCGATA 284
                      ***************** ******************************************

consensus_7719#0      ATTGCAGATGGATTAGTCATCTGAGGTGGAATAAAGCCCTCCCTAATCCA-CCAGAAAAA 358
consensus_7719#1      ATTGCAGATGGATTAGTCATCTGAGGTGGAATAAAGCCCTCCCTTATCCAACCAGAAAAA 344
                      ******************************************** ***** *********

consensus_7719#0      GCCAGCCATGACCATTTGCGGCAGGAATAGAATAAAATCATCAGAGCTCTTTGTTCTTAG 418
consensus_7719#1      GCCAGCCATGACCATTTGCGGCAGGAATAGAATAAAATCATCAGAGCTCTTTGTTCTTAG 404
                      ************************************************************

consensus_7719#0      TTGTGTACTTAGCATTCAAGAGCTTCTGCATGTCTGTACAAA-TCATTGTCTCGTGAATC 477
consensus_7719#1      TTGTGTACTTAGCATTCAAGAGCTTCTGCATGTCTGTACAAAATCATTGTCTCGTGAATC 464
                      ****************************************** *****************

consensus_7719#0      TACCGTGTGTGTTTTAACACTAAACACATGGTCATGAAGCTTGAAAAAAAAAACAAA-TT 536
consensus_7719#1      TACCGTGTGTGTTTTCACACTAAACACATGGTCATGAAGCTCGAAAAAAAAAACAAAATT 524
                      *************** ************************* *************** **

consensus_7719#0      TTATGAAAAAGGGTATTGGTTGTTCCATGTAATCTGCAGGCGAAGAAAACCTTACCTATC 596
consensus_7719#1      TTATGAAAAAAAAAAAAAAAAAAAACTCGAGACTA------------------------- 559
                      **********    *          *  *  *                            

consensus_7719#0      TACAGGTGTACTCTCTCCGTCAAAAAAAAAAAAACTTAATCTAGATGGGAATTTGACACA 656
consensus_7719#1      ------------------------------------------------------------
                                                                                  

consensus_7719#0      AC 658
consensus_7719#1      --