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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7721#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1706 fasta sequence
[TTTTCCAAACCATCAACGTGCCCTTCTATTTCCTTCTTCCCTTCCTCCGAGGGCTTCTGATCCGGAGAGACAGAGATGATTGGGAGCAGAGGCGGCGGCGGTGGCGCGGCGCCGAGGCCGAGGCGGCGGAGCGACCCGGGCGACAGCCGCGACCTCTCCGTGGCCACCACCACGGAGTCGTACAACTCCGAGAGGTCCGTGGGGAGCGGCGGCGGCCGCGGGACCGCCTTCCTCGACGCCTTCCGGTCATGCTTCGTCTCCGGGGAGGCGCAGGCGCGCTCCCCGGAGACCTCGTCGTTGTCCGACGACTTCCATCCCTCACAACAGCTATCACAGTCGATAAGCTCACAAGGTTCTAGCAGTGGAAGCAATTTTGAGATGCGGAGATCAATGAAAGGACTGTATAATCCAATGCATAGAAATTCTTCAGGAAAGGAGATCCCTGGAAGCACACAGTTCTCCTTACCACAGATCCAGAAAGCAACCAAAAATTTCTCGCCAAACCTGAAGATTGGGCAGGGCGGTTCCGGGACAGTATACAAAGGTCAGCTTAATGACGGCACTCTTATCGCCGTCAAACGGGCCAAGAAGAATGTGTACGACAAGCATATGGGTCGTGAGTTCCGGAACGAGATTGAGACGTTGCAATGTATCGAGCACCTTAATTTGGTAAGGTTTCATGGGTACCTGGAGTTTGGTGGTGAGCAGTTAATCATTGTTGAGTATGTTCCCAATGGAAATCTTCGTGAACACCTTGATTGTGTCAATGGAAAAATTCTTGAATTTTCTCTAAGATTGGATATTTCAATCGATGTGGCTCACGCTGTTACATATCTTCACACCTACTCAGATCACCCAGTCATCCACAGGGACATCAAATCGTCAAACATTCTTCTCACAAACAACTGTAGGGCAAAGGTTGCTGACTTTGGATTTGCCAAACTAGCTCCAACTGATGCTAGCCATGTCTCAACCCAAGTAAAAGGAACAGCAGGCTATCTTGATCCTGAATATCTCAGAACATACCAGCTCAATGAGAAGAGTGATGTCTACTCCTTTGGAGTTCTTCTGGTGGAGTTGATAACAGGGAGGCGCCCGATAGAACCAAGGAGAGCTATCGTCGAGCGTGTTACTGCAAAATGGGCAATGGAAAAATTTGTTGAGGGAAATGCAATACAAACGCTGGATCCAAATCTAG-AAGCAACTGATGCGATCAACCTGGCCGTCGAGAAAACGTACGAGCTGGCTCTGCAGTGCTTAGCTACAACTAAGAGGAACAGACCAAGCATGAGGCGATGCGCTGAGATCCTATGGAGCATACGCAAAGATTTCAGGGAGTTGGATATACCAACCGCATCCCTGAACTGAACTGAGACAGTTCACTTGGAGCAATCAAGAAAAGCTGCACTCCAGTTTGCCTCTCTTCAAAGCGTGGTGGTATGAATCACCCGATTGCTGGATGATGAATTTATTCCTTCAGGATGTGGTCTAAGTAGTTGTGATTGTGAACGGGACTGGTGATCTTCCTAGGAATTGTGTGTTCACCAGCTAGCAACTAGGAAC-AATTGCATAGCATATTCTGTACATGATAAATTGTTGCTGTGAGCAAGAC-AGACACAGATACTATATAATGGTATATTGGTTGAGGATGCAATTTTGTTGTGATTATTTAAAACTTCCAAAAGAACACACAAAGTTATATACAA]
[+] EMBL AK065978 [TTTTCCAAACCATCAACGTGCCCTTCTATTTCCTTCTTCCCTTCCTCCGAGGGCTTCTGATCCGGAGAGACAGAGATGATTGGGAGCAGAGGCGGCGGCGGTGGCGCGGCGCCGAGGCCGAGGCGGCGGAGCGACCCGGGCGACAGCCGCGACCTCTCCGTGGCCACCACCACGGAGTCGTACAACTCCGAGAGGTCCGTGGGGAGCGGCGGCGGCCGCGGGACCGCCTTCCTCGACGCCTTCCGGTCATGCTTCGTCTCCGGGGAGGCGCAGGCGCGCTCCCCGGAGACCTCGTCGTTGTCCGACGACTTCCATCCCTCACAACAGCTATCACAGTCGATAAGCTCACAAGGTTCTAGCAGTGGAAGCAATTTTGAGATGCGGAGATCAATGAAAGGACTGTATAATCCAATGCATAGAAATTCTTCAGGAAAGGAGATCCCTGGAAGCACACAGTTCTCCTTACCACAGATCCAGAAAGCAACCAAAAATTTCTCGCCAAACCTGAAGATTGGGCAGGGCGGTTCCGGGACAGTATACAAAGGTCAGCTTAATGACGGCACTCTTATCGCCGTCAAACGGGCCAAGAAGAATGTGTACGACAAGCATATGGGTCGTGAGTTCCGGAACGAGATTGAGACGTTGCAATGTATCGAGCACCTTAATTTGGTAAGGTTTCATGGGTACCTGGAGTTTGGTGGTGAGCAGTTAATCATTGTTGAGTATGTTCCCAATGGAAATCTTCGTGAACACCTTGATTGTGTCAATGGAAAAATTCTTGAATTTTCTCTAAGATTGGATATTTCAATCGATGTGGCTCACGCTGTTACATATCTTCACACCTACTCAGATCACCCAGTCATCCACAGGGACATCAAATCGTCAAACATTCTTCTCACAAACAACTGTAGGGCAAAGGTTGCTGACTTTGGATTTGCCAAACTAGCTCCAACTGATGCTAGCCATGTCTCAACCCAAGTAAAAGGAACAGCAGGCTATCTTGATCCTGAATATCTCAGAACATACCAGCTCAATGAGAAGAGTGATGTCTACTCCTTTGGAGTTCTTCTGGTGGAGTTGATAACAGGGAGGCGCCCGATAGAACCAAGGAGAGCTATCGTCGAGCGTGTTACTGCAAAATGGGCAATGGAAAAATTTGTTGAGGGAAATGCAATACAAACGCTGGATCCAAATCTAG AAGCAACTGATGCGATCAACCTGGCCGTCGAGAAAACGTACGAGCTGGCTCTGCAGTGCTTAGCTACAACTAAGAGGAACAGACCAAGCATGAGGCGATGCGCTGAGATCCTATGGAGCATACGCAAAGATTTCAGGGAGTTGGATATACCAACCGCATCCCTGAACTGAACTGAGACAGTTCACTTGGAGCAATCAAGAAAAGCTGCACTCCAGTTTGCCTCTCTTCAAAGCGTGGTGGTATGAATCACCCGATTGCTGGATGATGAATTTATTCCTTCAGGATGTGGTCTAAGTAGTTGTGATTGTGAACGGGACTGGTGATCTTCCTAGGAATTGTGTGTTCACCAGCTAGCAACTAGGAAC AATTGCATAGCATATTCTGTACATGATAAATTGTTGCTGTGAGCAAGAC AGACACAGATACTATATAATGGTATATTGGTTGAGGATGCAATTTTGTTGTGATTATTTAAAACTTCCAAAAGAACACACAAAGTTATATACAA]
[+] EMBL AK105035 [ TAGGGCAAAGGTTGCTGACTTTGGATTTGCCAAACTAGCTCCAACTGATGCTAGCCATGTCTCAACCCAAGTAAAAGGAACAGCAGGCTATCTTGATCCTGAATATCTCAGAACATACCAGCTCAATGAGAAGAGTGATGTCTACTCCTTTGGAGTTCTTCTGGTGGAGTTGATAACAGGGAGGCGCCCGATAGAACCAAGGAGAGCTATCGTCGAGCGTGTTACTGCAAAATGGGCAATGGAAAAATTTGTTGAGGGAAATGCAATACAAACGCTGGATCCAAATCTAG AAGCAACTGATGCGATCAACCTGGCCGTCGAGAAAACGTACGAGCTGGCTCTGCAGTGCTTAGCTACAACTAAGAGGAACAGACCAAGCATGAGGCGATGCGCTGAGATCCTATGGAGCATACGCAAAGATTTCAGGGAGTTGGATATACCAACCGCATCCCTGAACTGAACTGAGACAGTTCACTTGGAGCAATCAAGAAAAGCTGCACTCCAGTTTGCCTCTCTTCAAAGCGTGGTGGTATGAATCACCCGATTGCTGGATGATGAATTTATTCCTTCAGGATGTGGTCTAAGTAGTTGTGATTGTGAACGGGACTGGTGATCTTCCTAGGAATTGTGTGTTCACCAGCTAGCAACTAGGAAC AATTGCATAGCATATTCTGTACATGATAAATTGTTGCTGTGAGCAAGAC AGACACAGATACTATATAATGGTATATTGG ]
[+] EMBL BM418567 [ ATGCAATACAAACGCTGGATCCAAATCTAGAAAGCAACTGATGCGATCAACCT GCCTTCGAGAAAACGTACGAGCTGGCTCTCCAGTGCTTAGCTACAACTAAGAGGAACAGNCCAAGCATGAGGCGATGC CTGAGATCCTATGGAGCATAC CAAAGATTTCAGGGAGTTGGATATACCAACCGCATCCCTGAACTGAACTGAGACAGTTCACTTGGA CAATCAAGAAAAGCTGCACTCCAGTTTGCCTCTCTTCAAAGCGTGGTGGTATGAATCACCCGATTGCTGGATGATGAATTTATTCCTTCAGGATGTGGTCTAAGTAGTTGTGATTGTGAACGGGACTGGTGATCTTCCTAGGAATTGTGTGTTCACCAGCTAGCAACTAGGAACAAATTGCATAGCATATTCTGTACATGATAAATTGTTGCTGTGAGCAAGACAAGACACAGATACTATATAATGGTATATTGGTTGAGGATGCAAaaa ]
consensusID : consensus_7721#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 757 fasta sequence
[TAGGGCAAAGGTTGCTGACTTTGGATTTGCCAAACTAGCTCCAACTGATGCTAGCCATGTCTCAACCCAAGTAAAAGGAACAGCAGGCTATCTTGATCCTGAATATCTCAGAACATACCAGCTCAATGAGAAGAGTGATGTCTACTCCTTTGGAGTTCTTCTGGTGGAGTTGATAACAGGGAGGCGCCCGATAGAACCAAGGAGAGCTATCGTCGAGCGTGTTACTGCAAAATGGGCAATGGAAAAATTTGTTGAGGGAAATGCAATACAAACGCTGGATCCAAATCTAGAAGCAACTGATGCGATCAACCTGGCCGTCGAGAAAACGTACGAGCTGGCTCTGCAGTGCTTAGCTACAACTAAGAGGAACAGGCCAAGCATGAGGCGATGCGCTGAGATCCTATGGAGCATACGCAAAGATTTCAGGGAGTTGGATATACCAACCGCATCCCTGAACTGAACTGAGACAGTTCACTTGGAGCAATCAAGAAAAGCTGCACTCCAGTTTGCCTCTCTTCAAAGCGTGGTGGTATGAATCACCCGATTGCTGGATGATGAATTTATTCCTTCAGGATGTGGTCTAAGTAGTTGTGATTGTGAACGGGACTGGTGATCTTCCTAGGAATTGTGTGTTCACCAGCTAGCAACTAGGAACAATTGCATAGCATATTCTGTACATGATAAATTGTTGCTGTGAGCAAGACAGACACAAAGGCTATATAATGGTATATTGGTTGAGGATGCAAACTTAAAAAGA]
[-] EMBL CB625710 [TAGGGCAAAGGTTGCTGACTTTGGATTTGCCAAACTAGCTCCAACTGATGCTAGCCATGTCTCAACCCAAGTAAAAGGAACAGCAGGCTATCTTGATCCTGAATATCTCAGAACATACCAGCTCAATGAGAAGAGTGATGTCTACTCCTTTGGAGTTCTTCTGGTGGAGTTGATAACAGGGAGGCGCCCGATAGAACCAAGGAGAGCTATCGTCGAGCGTGTTACTGCAAAATGGGCAATGGAAAAATTTGTTGAGGGAAATGCAATACAAACGCTGGATCCAAATCTAGAAGCAACTGATGCGATCAACCTGGCCGTCGAGAAAACGTACGAGCTGGCTCTGCAGTGCTTAGCTACAACTAAGAGGAACAGGCCAAGCATGAGGCGATGCGCTGAGATCCTATGGAGCATACGCAAAGATTTCAGGGAGTTGGATATACCAACCGCATCCCTGAACTGAACTGAGACAGTTCACTTGGAGCAATCAAGAAAAGCTGCACTCCAGTTTGCCTCTCTTCAAAGCGTGGTGGTATGAATCACCCGATTGCTGGATGATGAATTTATTCCTTCAGGATGTGGTCTAAGTAGTTGTGATTGTGAACGGGACTGGTGATCTTCCTAGGAATTGTGTGTTCACCAGCTAGCAACTAGGAACAATTGCATAGCATATTCTGTACATGATAAATTGTTGCTGTGAGCAAGACAGACACAAAGGCTATATAATGGTATATTGGTTGAGGATGCAAACTTAAAAAGA]
consensusID : consensus_7721#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 144 fasta sequence
[GGATTCGGCAGAGGCTGATCCGGAGAGACAGAGATGATTGGGAGCAGAGGCGGCGGCGGTGGCGCGGCGCCGAGGCCGAGGCGGCGGAGCGACCCGGGCGACAGCCGCGACCTCTCCGTGGCCACCACCACGGAGTAGTACAAC]
[-] EMBL CF325903 [GGATTCGGCAGAGGCTGATCCGGAGAGACAGAGATGATTGGGAGCAGAGGCGGCGGCGGTGGCGCGGCGCCGAGGCCGAGGCGGCGGAGCGACCCGGGCGACAGCCGCGACCTCTCCGTGGCCACCACCACGGAGTAGTACAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7721#0 TTTTCCAAACCATCAACGTGCCCTTCTATTTCCTTCTTCCCTTCCTCCGAGGGCTTCTGA 60
consensus_7721#1 ------------------------------------------------------------
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 TCCGGAGAGACAGAGATGATTGGGAGCAGAGGCGGCGGCGGTGGCGCGGCGCCGAGGCCG 120
consensus_7721#1 ------------------------------------------------------------
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 AGGCGGCGGAGCGACCCGGGCGACAGCCGCGACCTCTCCGTGGCCACCACCACGGAGTCG 180
consensus_7721#1 ------------------------------------------------------------
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 TACAACTCCGAGAGGTCCGTGGGGAGCGGCGGCGGCCGCGGGACCGCCTTCCTCGACGCC 240
consensus_7721#1 ------------------------------------------------------------
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 TTCCGGTCATGCTTCGTCTCCGGGGAGGCGCAGGCGCGCTCCCCGGAGACCTCGTCGTTG 300
consensus_7721#1 ------------------------------------------------------------
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 TCCGACGACTTCCATCCCTCACAACAGCTATCACAGTCGATAAGCTCACAAGGTTCTAGC 360
consensus_7721#1 ------------------------------------------------------------
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 AGTGGAAGCAATTTTGAGATGCGGAGATCAATGAAAGGACTGTATAATCCAATGCATAGA 420
consensus_7721#1 ------------------------------------------------------------
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 AATTCTTCAGGAAAGGAGATCCCTGGAAGCACACAGTTCTCCTTACCACAGATCCAGAAA 480
consensus_7721#1 ------------------------------------------------------------
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 GCAACCAAAAATTTCTCGCCAAACCTGAAGATTGGGCAGGGCGGTTCCGGGACAGTATAC 540
consensus_7721#1 ------------------------------------------------------------
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 AAAGGTCAGCTTAATGACGGCACTCTTATCGCCGTCAAACGGGCCAAGAAGAATGTGTAC 600
consensus_7721#1 ------------------------------------------------------------
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 GACAAGCATATGGGTCGTGAGTTCCGGAACGAGATTGAGACGTTGCAATGTATCGAGCAC 660
consensus_7721#1 ------------------------------------------------------------
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 CTTAATTTGGTAAGGTTTCATGGGTACCTGGAGTTTGGTGGTGAGCAGTTAATCATTGTT 720
consensus_7721#1 ------------------------------------------------------------
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 GAGTATGTTCCCAATGGAAATCTTCGTGAACACCTTGATTGTGTCAATGGAAAAATTCTT 780
consensus_7721#1 ------------------------------------------------------------
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 GAATTTTCTCTAAGATTGGATATTTCAATCGATGTGGCTCACGCTGTTACATATCTTCAC 840
consensus_7721#1 ------------------------------------------------------------
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 ACCTACTCAGATCACCCAGTCATCCACAGGGACATCAAATCGTCAAACATTCTTCTCACA 900
consensus_7721#1 ------------------------------------------------------------
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 AACAACTGTAGGGCAAAGGTTGCTGACTTTGGATTTGCCAAACTAGCTCCAACTGATGCT 960
consensus_7721#1 --------TAGGGCAAAGGTTGCTGACTTTGGATTTGCCAAACTAGCTCCAACTGATGCT 52
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 AGCCATGTCTCAACCCAAGTAAAAGGAACAGCAGGCTATCTTGATCCTGAATATCTCAGA 1020
consensus_7721#1 AGCCATGTCTCAACCCAAGTAAAAGGAACAGCAGGCTATCTTGATCCTGAATATCTCAGA 112
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 ACATACCAGCTCAATGAGAAGAGTGATGTCTACTCCTTTGGAGTTCTTCTGGTGGAGTTG 1080
consensus_7721#1 ACATACCAGCTCAATGAGAAGAGTGATGTCTACTCCTTTGGAGTTCTTCTGGTGGAGTTG 172
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 ATAACAGGGAGGCGCCCGATAGAACCAAGGAGAGCTATCGTCGAGCGTGTTACTGCAAAA 1140
consensus_7721#1 ATAACAGGGAGGCGCCCGATAGAACCAAGGAGAGCTATCGTCGAGCGTGTTACTGCAAAA 232
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 TGGGCAATGGAAAAATTTGTTGAGGGAAATGCAATACAAACGCTGGATCCAAATCTAGAA 1200
consensus_7721#1 TGGGCAATGGAAAAATTTGTTGAGGGAAATGCAATACAAACGCTGGATCCAAATCTAGAA 292
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 GCAACTGATGCGATCAACCTGGCCGTCGAGAAAACGTACGAGCTGGCTCTGCAGTGCTTA 1260
consensus_7721#1 GCAACTGATGCGATCAACCTGGCCGTCGAGAAAACGTACGAGCTGGCTCTGCAGTGCTTA 352
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 GCTACAACTAAGAGGAACAGACCAAGCATGAGGCGATGCGCTGAGATCCTATGGAGCATA 1320
consensus_7721#1 GCTACAACTAAGAGGAACAGGCCAAGCATGAGGCGATGCGCTGAGATCCTATGGAGCATA 412
consensus_7721#2 ---------------------------------GGATTCGGCAGAGGCTGATCCGG-AGA 26
*** ** * ** * * *
consensus_7721#0 CGCAAAGATTTCAGGGAGTTGGATATACCAACCGCATCCCTGAACTGAA-CTGAGACAGT 1379
consensus_7721#1 CGCAAAGATTTCAGGGAGTTGGATATACCAACCGCATCCCTGAACTGAA-CTGAGACAGT 471
consensus_7721#2 GACAGAGATGATTGGGAGC-AGAGGCGGCGGCGGTGGCGCGGCGCCGAGGCCGAGGCGGC 85
** **** ***** ** * * * * * * * ** * *** * *
consensus_7721#0 TCACTTGGAGCAATCAAGA--AAAGCTGC-ACTCCAGTTTGCCTCTCTTCAAAGCGTGGT 1436
consensus_7721#1 TCACTTGGAGCAATCAAGA--AAAGCTGC-ACTCCAGTTTGCCTCTCTTCAAAGCGTGGT 528
consensus_7721#2 ------GGAGCGACCCGGGCGACAGCCGCGACCTCTCCGTGGCCACCACCACGGAGTAGT 139
***** * * * * *** ** ** * ** * * ** * ** **
consensus_7721#0 GGTATGAATCACCCGATTGCTGGATGATGAATTTATTCCTTCAGGATGTGGTCTAAGTAG 1496
consensus_7721#1 GGTATGAATCACCCGATTGCTGGATGATGAATTTATTCCTTCAGGATGTGGTCTAAGTAG 588
consensus_7721#2 ACAAC------------------------------------------------------- 144
*
consensus_7721#0 TTGTGATTGTGAACGGGACTGGTGATCTTCCTAGGAATTGTGTGTTCACCAGCTAGCAAC 1556
consensus_7721#1 TTGTGATTGTGAACGGGACTGGTGATCTTCCTAGGAATTGTGTGTTCACCAGCTAGCAAC 648
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 TAGGAACAATTGCATAGCATATTCTGTACATGATAAATTGTTGCTGTGAGCAAGACAGAC 1616
consensus_7721#1 TAGGAACAATTGCATAGCATATTCTGTACATGATAAATTGTTGCTGTGAGCAAGACAGAC 708
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 ACAGATACTATATAATGGTATATTGGTTGAGGATGCAATTTTGTTGTGATTATTTAAAAC 1676
consensus_7721#1 ACAAAGGCTATATAATGGTATATTGGTTGAGGATGCAAACTTAAAAAGA----------- 757
consensus_7721#2 ------------------------------------------------------------
consensus_7721#0 TTCCAAAAGAACACACAAAGTTATATACAA 1706
consensus_7721#1 ------------------------------
consensus_7721#2 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||