cluster # 7725

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Oryza sativa
cluster # 7725 cluster # 7725 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7725#0 length = 452 sequences # 2

consensus_7725#1 length = 423 sequences # 3

consensusID : consensus_7725#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 452
fasta sequence

                              [TCTAAAAACTCATACCCAAGTCGACCTTTCAATCAGATACTGAGTTGAGCCATACTGAAATCCAGCAACCGGATTGCCGGTGTTTTCGCCAATTGCCAGGAGGCATTGCAATTTGCACTCTAGATCCCCATCACCCGATGCTTGTCGGGGTCATGGCCTCCCTGCCGCACCCCCGGGGACCACCTGAATCCTCGACCTCCCAGAGAAGGGACCCACAAGTCGACGGCATCTCGCTCTTGCCGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAACTTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAGAGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGAGGCCAAGATGGACAAGAGCGTCCTGATGATGT]

[+] EMBL CB620063             [TCTAAAAACTCATACCCAAGTCGACCTTTCAATCAGATACTGAGTTGAGCCATACTGAAATCCAGCAACCGGATTGCCGGTGTTTTCGCCAATTGCCAGGAGGCATTGCAATTTGCACTCTAGATCCCCATCACCCGATGCTTGTCGGGGTCATGGCCTCCCTGCCGCACCCCCGGGGACCACCTGAATCCTCGACCTCCCAGAGAAGGGACCCACAAGTCGACGGCATCTCGCTCTTGCCGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAACTTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAGAGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGAGGCCAAGATGGACAAGAGCGTCCTGATGATGT]
[+] EMBL CB619949             [TCTAAAAACTCATACCCAAGTCGACCTTTCAATCAGATACTGAGTTGAGCCATACTGAAATCCAGCAACCGGATTGCCGGTGTTTTCGCCAATTGCCAGGAGGCATTGCAATTTGCACTCTAGATCCCCATCACCCGATGCTTGTCGGGGTCATGGCCTCCCTGCCGCACCCCCGGGGACCACCTGAATCCTCGACCTCCCAGAGAAGGGACCCACAAGTCGACGGCATCTCGCTCTTGCCGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAACTTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAGAGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGAGGCCAAGATGGACAAGAGCGTCCTGATGna  ]




>consensus_7725#0
TCTAAAAACTCATACCCAAGTCGACCTTTCAATCAGATACTGAGTTGAGCCATACTGAAA
TCCAGCAACCGGATTGCCGGTGTTTTCGCCAATTGCCAGGAGGCATTGCAATTTGCACTC
TAGATCCCCATCACCCGATGCTTGTCGGGGTCATGGCCTCCCTGCCGCACCCCCGGGGAC
CACCTGAATCCTCGACCTCCCAGAGAAGGGACCCACAAGTCGACGGCATCTCGCTCTTGC
CGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAAC
TTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAG
AGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGA
GGCCAAGATGGACAAGAGCGTCCTGATGATGT

consensusID : consensus_7725#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 423
fasta sequence

                              [TTTTTACTAAGATGTATCATATTTAATACGAGTATATACCGGTAACAGGTAGCAACAAAACAGACGGTCACACTTTTTCACAGAGGTAAACATACCATCTCGCTCTTGCCGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAACTTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAGAGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGAGGCCAAGATGGACAAGAGCGTCCTGATGATGTTGANGGNGGCGGCGGCGGTGATCCTCCTGTGGCTCCCATTGGTGTTGCCGNCGCTANCGCCGCCGCCGCCATTCTTGCTCTTCATCCCCGTCGTGATGATGC]

[-] EMBL AU075970             [TTTTTACTAAGATGTATCATATTTAATACGAGTATATACCGGTAACAGGTAGCAACAAAACAGACGGTCACACTTTTTCACAGAGGTAAACATACCATCTCGCTCTTGCCGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAACTTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAGAGTGGAGCAACCGGTGAGCCTCCGGCCGGA GAGGCAGTCCAGTCAACAGCTGCAGGGGAGGCCAAGATGGACAAGAGCGTCCTGATGATGTTGANGGNGGCGGCGGCGGTGATCCTCCTGTGGCTCCCATTGGTGTTGCCGNCGCTANCGCCGCCGCCGCCATTCTTGCTCTTCATCCCCGTCGTGATGATGC]
[+] EMBL CB634636             [              TATCATATTTAATACGAGTATATACCGGTAACAGGTAGCAACAAAACAGACGGTCACACTTTTTCACAGAGGTAAACATACCATCTCGCTCTTGCCGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGGGTTAACTTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAGAGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGAGGCCAAGATGGACAAGAGCGTCC                                                                                                               ]
[+] EMBL CB647625             [                                                                            TTCACAGAGGTAAACATACCATCTCGCTCTTGCCGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAACTTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAGAGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGAGGCCAAGATGGACAAGAGCGTCCTG                                                                                                             ]




>consensus_7725#1
TTTTTACTAAGATGTATCATATTTAATACGAGTATATACCGGTAACAGGTAGCAACAAAA
CAGACGGTCACACTTTTTCACAGAGGTAAACATACCATCTCGCTCTTGCCGCTAGATTCA
AAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAACTTCTCACTGGA
AACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAGAGTGGAGCAAC
CGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGAGGCCAAGATGG
ACAAGAGCGTCCTGATGATGTTGANGGNGGCGGCGGCGGTGATCCTCCTGTGGCTCCCAT
TGGTGTTGCCGNCGCTANCGCCGCCGCCGCCATTCTTGCTCTTCATCCCCGTCGTGATGA
TGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7725#0      TCTAAAAACTCATACCCAAGTCGACCTTTCAATCAGATACTGAGTTGAGCCATACTGAAA 60
consensus_7725#1      ------------------------------------------------------------
                                                                                  

consensus_7725#0      TCCAGCAACCGGATTGCCGGTGTTTTCGCCAATTGCCAGGAGGCATTGCAATTTGCACTC 120
consensus_7725#1      ---------------------------------------------------TTTTTACTA 9
                                                                         ***  *** 

consensus_7725#0      TAGATCCCCATCACCCGATGCTTGTCGGGGTCATGGCCTCCCTGCCGCACCCCCGGGGAC 180
consensus_7725#1      -AGATGTATCATATTTAATACGAGTATATACCGGTAACAGGTAGCAACAAAACAGACGGT 68
                       ****       *    ** *  **      *     *     **  **   * *  *  

consensus_7725#0      CACCTGAATCCTCGACCTCCCAGAGAAGGGACCCACAAGTCGACGGCATCTCGCTCTTGC 240
consensus_7725#1      CACAC----------TTTTTCACAGAGGTAAAC---------ATACCATCTCGCTCTTGC 109
                      ***              *  ** *** *  * *         *   **************

consensus_7725#0      CGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAAC 300
consensus_7725#1      CGCTAGATTCAAAGTGTACAGGCTGCTGGCCATATATATAGTAGCTTGGCCTGTGTTAAC 169
                      ************************************************************

consensus_7725#0      TTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAG 360
consensus_7725#1      TTCTCACTGGAAACATCCATACAACACTTCCTCATCACAAAACACACATGAACACCGGAG 229
                      ************************************************************

consensus_7725#0      AGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGA 420
consensus_7725#1      AGTGGAGCAACCGGTGAGCCTCCGGCCGGAGGAGGCAGTCCAGTCAACAGCTGCAGGGGA 289
                      ************************************************************

consensus_7725#0      GGCCAAGATGGACAAGAGCGTCCTGATGATGT---------------------------- 452
consensus_7725#1      GGCCAAGATGGACAAGAGCGTCCTGATGATGTTGANGGNGGCGGCGGCGGTGATCCTCCT 349
                      ********************************                            

consensus_7725#0      ------------------------------------------------------------
consensus_7725#1      GTGGCTCCCATTGGTGTTGCCGNCGCTANCGCCGCCGCCGCCATTCTTGCTCTTCATCCC 409
                                                                                  

consensus_7725#0      --------------
consensus_7725#1      CGTCGTGATGATGC 423