These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7729#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 844 fasta sequence [TATCAGGCTGCTGCACTAGACTAGTAGCTCAAGCCTCAGCCTCATCCCCCCATTTGATACGAGAGAGAGAAGAGGAGAAGAAAGCAAAAGCCCCCTCTGCAGAAAAGAAGCGTTTTTTTTTCTTTCTTCTCGACGCAAACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACCACGC-GGGAAACCAGCCTCAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAACTCCGCGGAGATCCGTGCGGGAGATGACCCGGGCAGTAACTCTTGATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACTTTACGGCCTGGGCCGTTACGTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAATGGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAGACTGTCACCAAGGAAACTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAGCTTGCAATGAAGTTTGAGAAGGGTCTCAATACTGCCACTTTGCTGTCCAATGAGGTTAAATGGAGACAAGTGGCTTTGTTGGAGCGTGATATCCTTCTGAAGAATCTAAAGACTGTATTAGAGTCACTGAGAGGCCGTGTGACAGGCAAAACTAAGGCTGAACTTGAGGACTCTATATCTATGGTTGATATTCTTGCTGTCCAGCTCTCCAAAAGAGAAGCTGAGCTGCTTCAGCAAAAGGCAGAAGTCACAGAATTAGCAAAATCATTAAAGCTTGCTTCTGAAGATGCCAAAAAAATCGTTGACGAAGAAAGGGCAAG] [+] EMBL CB658342 [TATCAGGCTGCTGCACTAGACTAGTAGCTCAAGCCTCAGCCTCATCCCCCCATTTGATACGAGAGAGAGAAGAGGAGAAGAAAGCAAAAGCTCCCTCTGCAGAAAAGAAGCGTTTTTTTTTCTTTCTTCTCGACGCAAACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACCACGC GGGAAACCAGCCTCAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAACTCCGCGGAGATCCGTGCGGGAGATGACCCGGGCAGTAACTCTTGATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACTTTACGGCCTGGGCCGTTACGTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAATGGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAGACTGTCACCAAGGAAACTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAGCTTGCAATGAAGTTTGAGAAGGGTCTCAATACTGCCACTTTGCTGTCCAATGAGGTTAAATGGAGACAAGTGGCTTTGTTGGAGCGTGATATCCTTCTGAAGAATCTAAAGACTGTATTAGAGTCACTGAGAGGCCGTGTGACAGGCAAAACTAAGGCTGAACTTGAGGACTCTATATCTATGGTTGATATTCTTGCTGTCCAGCTCTCCAAAAGAGAAGCTGAGCTGCTTCc ] [+] EMBL CB642326 [ AAAAGCCCTCTCTGCAGAAAAGAAGCGTTTTTTTTTCTTTCTTCTCGACGCAAACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACCACGC GGGAAACCAGCCTCAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAACTCCGCGGAGATCCGTGCGGGAGATGACCCGGGCAGTAACTCTTGATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACTTTACGGCCTGGGCCGTTACGTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAATGGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAGACTGTCACCAAGGAAACTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAGCTTGCAATGAAGTTTGAGAAGGGTCTCAATACTGCCACTTTGCTGTCCAATGAGGTTAAATGGAGACAAGTGGCTTTGTTGGAGCGTGATATCCTTCTGAAGAATCTAAAGACTGTATTAGAGTCACTGAGAGGCCGTGTGACAGGCAAAACTAAGGCTGAACTTGAGGACTCTATATCTATGGTTGATATTCTTGCTGTCCAGCTCTCCAAAAGAGAAGCTGAGCTGCTTCAGCAAAAGGCAGAAGTCACAGAATTAGCAAAATCATTAAAGCTTGCTTCTGAAGATGCCAAAAA ] [+] EMBL CB642329 [ AAAGCCCCCTCTGCAGAAAAGAAGCGTTTTTTTTTCTTTCTTCTCGACGCAAACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACCACGC GGGAAACCAGCCTCAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAACTCCGCGGAGATCCGTGCGGGAGATGACCCGGGCAGTAACTCTTGATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACTTTACGGCCTGGGCCGTTACGTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAATGGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAGACTGTCACCAAGGAAACTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAGCTTGCAATGAAGTTTGAGAAGGGTCTCAATACTGCCACTTTGCTGTCCAATGAGGTTAAATGGAGACAAGTGGCTTTGTTGGAGCGTGATATCCTTCTGAAGAATCTAAAGACTGTATTAGAGTCACTGAGAGGCCGTGTGACAGGCAAAACTAAGGCTGAACTTGAGGACTCTATATCTATGGTTGATATTCTTGCTGTCCAGCTCTCCAAAAGAGAAGCTGAGCTGCTTCAGCAAAAGGCAGAAGTCACAGAATTAGCAAAATCATTAAAGCTTGCTTCTGAAGATGCCAAAAAAATCGTTGACGAAGAAAGGGCAA ] [+] EMBL CB642245 [ AAAGGAGGCAGGGAAACCATCCTCCTGTTCGTCATCCCCATTGGCGGCTCCGAATCGGTACAAGAACTCCGCGGAGATCCGTGCGGGAGATGACCCGGGCAGTAACTCTTGATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCACGGCTCAGACTGATACTTTACGGCCTGGGCCGTTACGTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAATGGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAGACTGTCACCAAGGAAACTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAGCTTGCAATGAAGTTTGAGAAGGGTCTCAATACTGCCACTTTGCTGTCCAATGAGGTTAAATGGAGACAAGTGGCTTTGTTGGAGCGTGATATCCTTCTGAAGAATCTAAAGACTGTATTAGAGTCACTGAGAGGCCGTGTGACAGGCAAAACTAAGGCTGAACTTGAGGACTCTATATCTATGGTTGATATTCTTGCTGTCCAGCTCTCCAAAAGAGAAGCTGAGCTGCTTCAGCAAAAGGCAGAAGTCACAGAATTAGCAAAATCATTAAAGCTTGCTTCTGAAGATGCCAAAAAAATCGTTGACGAAGAAAGGGCAAG] consensusID : consensus_7729#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence [AAGAAAGCAAAAGCTCCCTCTGCAGAAAAGAAGCGTTTTTTTTTCTTTCTTCTCGACGCAAACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACCACGCGGGAAACCAGCCTCAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAACTCCGCGGAGATCCGTGCGGGAGGTTTTTCATTCTACAGATGACCCGGGCAGTAACTCTTGATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACTTTACGGCCTGGGCCGTTACGTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAATGGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAGACTGTCACCAAGGAAACTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAGCTTGCAATGAAGTTTGAGAAGGGTCT] [+] EMBL CB639530 [AAGAAAGCAAAAGCTCCCTCTGCAGAAAAGAAGCGTTTTTTTTTCTTTCTTCTCGACGCAAACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACCACGCGGGAAACCAGCCTCAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAACTCCGCGGAGATCCGTGCGGGAGGTTTTTCATTCTACAGATGACCCGGGCAGTAACTCTTGATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACTTTACGGCCTGGGCCGTTACGTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAATGGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAGACTGTCACCAAGGAAACTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAGCTTGCAATGAAGTTTGAGAAGGGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7729#0 TATCAGGCTGCTGCACTAGACTAGTAGCTCAAGCCTCAGCCTCATCCCCCCATTTGATAC 60 consensus_7729#1 ------------------------------------------------------------ consensus_7729#0 GAGAGAGAGAAGAGGAGAAGAAAGCAAAAGCCCCCTCTGCAGAAAAGAAGCGTTTTTTTT 120 consensus_7729#1 -----------------AAGAAAGCAAAAGCTCCCTCTGCAGAAAAGAAGCGTTTTTTTT 43 ************** **************************** consensus_7729#0 TCTTTCTTCTCGACGCAAACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACC 180 consensus_7729#1 TCTTTCTTCTCGACGCAAACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACC 103 ************************************************************ consensus_7729#0 ACGCGGGAAACCAGCCTCAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAA 240 consensus_7729#1 ACGCGGGAAACCAGCCTCAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAA 163 ************************************************************ consensus_7729#0 CTCCGCGGAGATCCGTGCGGGAG----------------ATGACCCGGGCAGTAACTCTT 284 consensus_7729#1 CTCCGCGGAGATCCGTGCGGGAGGTTTTTCATTCTACAGATGACCCGGGCAGTAACTCTT 223 *********************** ********************* consensus_7729#0 GATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACTTTA 344 consensus_7729#1 GATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACTTTA 283 ************************************************************ consensus_7729#0 CGGCCTGGGCCGTTACGTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAAT 404 consensus_7729#1 CGGCCTGGGCCGTTACGTCCTGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAAT 343 ************************************************************ consensus_7729#0 GGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAG 464 consensus_7729#1 GGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAG 403 ************************************************************ consensus_7729#0 ACTGTCACCAAGGAAACTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAG 524 consensus_7729#1 ACTGTCACCAAGGAAACTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAG 463 ************************************************************ consensus_7729#0 CTTGCAATGAAGTTTGAGAAGGGTCTCAATACTGCCACTTTGCTGTCCAATGAGGTTAAA 584 consensus_7729#1 CTTGCAATGAAGTTTGAGAAGGGTCT---------------------------------- 489 ************************** consensus_7729#0 TGGAGACAAGTGGCTTTGTTGGAGCGTGATATCCTTCTGAAGAATCTAAAGACTGTATTA 644 consensus_7729#1 ------------------------------------------------------------ consensus_7729#0 GAGTCACTGAGAGGCCGTGTGACAGGCAAAACTAAGGCTGAACTTGAGGACTCTATATCT 704 consensus_7729#1 ------------------------------------------------------------ consensus_7729#0 ATGGTTGATATTCTTGCTGTCCAGCTCTCCAAAAGAGAAGCTGAGCTGCTTCAGCAAAAG 764 consensus_7729#1 ------------------------------------------------------------ consensus_7729#0 GCAGAAGTCACAGAATTAGCAAAATCATTAAAGCTTGCTTCTGAAGATGCCAAAAAAATC 824 consensus_7729#1 ------------------------------------------------------------ consensus_7729#0 GTTGACGAAGAAAGGGCAAG 844 consensus_7729#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||