cluster # 7737

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Oryza sativa
cluster # 7737 cluster # 7737 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7737#0 length = 625 sequences # 3

consensus_7737#1 length = 421 sequences # 1
consensus_7737#2 length = 147 sequences # 1

consensusID : consensus_7737#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 625
fasta sequence

                              [CGCCGATGCAGCCGTACCCGGCGGCGCCGGCGTACTACAACGCCGCCGCGCCGTCCTACCCCGTCTACCCCTCCTACGCTGGCTACCCGCAGCAAGAACAGGATCCTGGCTGCAGCATCATGTAAAAGATTGTGAGTATCAATCAGAGGAGCTAGAATCTGGCAAAAACTATGGAGAATTATTAAGGTATTTGAGTTCAGAATCAGGCCAAGGTTTGTGCATGGCTTGAGGTGGATCATGCAAGGTCAGGCCAAGATGATCCAAGAAGTTTGCGAGTTTGATCTTTGATGAGCTGCATCATCGATCTGATCTGCAAAGGTGGTG-AAAAAAAAGGCAAAATTCTGTCGAATGCTGCAGCTGAAGAAGTAGCTTTCTGTTCATGCTTTTTTTTTTAAATGTGAAGCACTAGTAGACTAGTAGTAGTGTTTTCAATTATCCTTTTTCTTTCTGCGAGTATTTAGTGTTATTATCCGAAATAGAGGTTGAAATAAAGAGCATCTGTACATTATGCACTCAGTTTTTTCTCTGAATTTTATCAGCTTTCAGAGAAGTGCTGAAGATTTGGGACTTGTCGTGTCACCTCGTGTATATTGGGTTTGGATGTTTTTAGTTAGGAACCAGAGGT]

[+] EMBL AK068208             [CGCCGATGCAGCCGTACCCGGCGGCGCCGGCGTACTACAACGCCGCCGCGCCGTCCTACCCCGTCTACCCCTCCTACGCTGGCTACCCGCAGCAAGAACAGGATCCTGGCTGCAGCATCATGTAAAAGATTGTGAGTATCAATCAGAGGAGCTAGAATCTGGCAAAAACTATGGAGAATTATTAAGGTATTTGAGTTCAGAATCAGGCCAAGGTTTGTGCATGGCTTGAGGTGGATCATGCAAGGTCAGGCCAAGATGATCCAAGAAGTTTGCGAGTTTGATCTTTGATGAGCTGCATCATCGATCTGATCTGCAAAGGTGGTG AAAAAAAAGGCAAAATTCTGTCGAATGCTGCAGCTGAAGAAGTAGCTTTCTGTTCATGCTTTTTTTTTTAAATGTGAAGCACTAGTAGACTAGTAGTAGTGTTTTCAATTATCCTTTTTCTTTCTGCGAGTATTTAGTGTTATTATCCGAAATAGAGGTTGAAATAAAGAGCATCTGTACATTATGCACTCAGTTTTTTCTCTGAATTTTATCAGCTTTCAGAGAAGTGCTGAAGATTTGGGACTTGTCGTGTCACCTCGTGTATATTGGGTTTGGATGTTTTTAGTTAGGAACCAGAGGT]
[-] EMBL CB680142             [ GCCGATGCAGCCGTACCCGGCGGCGCCGGCGTATTACAACGCCGCCGCGCCGTCCTACCCCGTCTACCCCTCCTACGCTGGCTACCCGCAGCAAGAACAGGATCCTGGCTGCAGCATCATGTAAAAGATTGTGAGTATCAATCAGAGGAGCTAAAATCTGGCAAAAACTATGGAGAATTATTAAGGTATTTGAGTTCAGAATCAGGCCAAGGTTTGTGCATGGCTTGAGGTGGATCATGCAAGGTCAGGCCAAGATGATCCAAGAAGTTTGCGAGTTTGATCTTTGATGAGCTGCATCATCGATCTGATCTGCAAAGGTGGTG AAAAAAAAGGCAAAATTCTGTCGAATGCTGCAGCTGAAGAAGTAGCTTTCTGTTCATGCTTTTTTTTTTAAATGTGAAGCACTAGTAGACTAGTAGTAGTGTTTTCAATTATCCTTTTTCTTTCTGCGAGTATTTAGTGTTATTATCCGAAATAGGGGTTGAAATAAAGAGCATCTGTACAT                                                                                                                       ]
[+] EMBL AU091515             [                                                                                                                                                                                                                                                                         AAGTTTGCGAGTTTNATCTTTGATGAGCTGCATCATCGATCTGATCTGCAAAGGTGGTGAAAAAAAAAGGCAAAATTCTGTCGAATGCTGCAGCTGAAGAAGTAGCTTTCTGTTCATGCTTTTTTTTTTAAATGTGAAGCACTAGTAGACTAGTAGTAGTGTTTTCAATTATCCTTTTTCTTTCTGCGAGTATTTAGTGTTATTATCCGAAATAGAGGTTGAAATAAAGAGCATCTGTACATTATGCAaaaaa                                                                                                            ]




>consensus_7737#0
CGCCGATGCAGCCGTACCCGGCGGCGCCGGCGTACTACAACGCCGCCGCGCCGTCCTACC
CCGTCTACCCCTCCTACGCTGGCTACCCGCAGCAAGAACAGGATCCTGGCTGCAGCATCA
TGTAAAAGATTGTGAGTATCAATCAGAGGAGCTAGAATCTGGCAAAAACTATGGAGAATT
ATTAAGGTATTTGAGTTCAGAATCAGGCCAAGGTTTGTGCATGGCTTGAGGTGGATCATG
CAAGGTCAGGCCAAGATGATCCAAGAAGTTTGCGAGTTTGATCTTTGATGAGCTGCATCA
TCGATCTGATCTGCAAAGGTGGTGAAAAAAAAGGCAAAATTCTGTCGAATGCTGCAGCTG
AAGAAGTAGCTTTCTGTTCATGCTTTTTTTTTTAAATGTGAAGCACTAGTAGACTAGTAG
TAGTGTTTTCAATTATCCTTTTTCTTTCTGCGAGTATTTAGTGTTATTATCCGAAATAGA
GGTTGAAATAAAGAGCATCTGTACATTATGCACTCAGTTTTTTCTCTGAATTTTATCAGC
TTTCAGAGAAGTGCTGAAGATTTGGGACTTGTCGTGTCACCTCGTGTATATTGGGTTTGG
ATGTTTTTAGTTAGGAACCAGAGGT

consensusID : consensus_7737#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 421
fasta sequence

                              [GAACAAGGATCACTAGCTGCAGCATCATGTAAAAAGATTGTGAGTATTCAATCAGAGGAGCTAAAATCTGCAAAAAACTATGGGAGAATTATTAAGGTATTTGAGTTCAAGAATCAGGCACAAGGTTTGTCCATGGCTTGAGGTGATCCGGTGATCATGCATGGTCAGCCCAAGAGGATCACAAGAAAGTTTGCGAGGTTTGATGAGCTGCATCATCGATCTGATCTGCAAAGGTGATGAAAAAAAGCGCAAAATTATGTCAGCATGCTACAGCTGAAGGATAGCTTTCTGTTCATTTTTTTTTTTATGTGAACCAGTAGTAGACTAGTATTAGTAGTGTTTTTAATTACCATGTTTCTTTCTGCGAGTATTTAGTGTTATTATCCGAAATAGAGGGAGAAATAAAGAGCATCTGTAAAAA]

[+] EMBL BI802739             [GAACAAGGATCACTAGCTGCAGCATCATGTAAAAAGATTGTGAGTATTCAATCAGAGGAGCTAAAATCTGCAAAAAACTATGGGAGAATTATTAAGGTATTTGAGTTCAAGAATCAGGCACAAGGTTTGTCCATGGCTTGAGGTGATCCGGTGATCATGCATGGTCAGCCCAAGAGGATCACAAGAAAGTTTGCGAGGTTTGATGAGCTGCATCATCGATCTGATCTGCAAAGGTGATGAAAAAAAGCGCAAAATTATGTCAGCATGCTACAGCTGAAGGATAGCTTTCTGTTCATTTTTTTTTTTATGTGAACCAGTAGTAGACTAGTATTAGTAGTGTTTTTAATTACCATGTTTCTTTCTGCGAGTATTTAGTGTTATTATCCGAAATAGAGGGAGAAATAAAGAGCATCTGTAAAAA]




>consensus_7737#1
GAACAAGGATCACTAGCTGCAGCATCATGTAAAAAGATTGTGAGTATTCAATCAGAGGAG
CTAAAATCTGCAAAAAACTATGGGAGAATTATTAAGGTATTTGAGTTCAAGAATCAGGCA
CAAGGTTTGTCCATGGCTTGAGGTGATCCGGTGATCATGCATGGTCAGCCCAAGAGGATC
ACAAGAAAGTTTGCGAGGTTTGATGAGCTGCATCATCGATCTGATCTGCAAAGGTGATGA
AAAAAAGCGCAAAATTATGTCAGCATGCTACAGCTGAAGGATAGCTTTCTGTTCATTTTT
TTTTTTATGTGAACCAGTAGTAGACTAGTATTAGTAGTGTTTTTAATTACCATGTTTCTT
TCTGCGAGTATTTAGTGTTATTATCCGAAATAGAGGGAGAAATAAAGAGCATCTGTAAAA
A

consensusID : consensus_7737#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 147
fasta sequence

                              [CAAACTTATGTAGCATGCGACATAATTTTTTTTTATGTGAAGCAGTAGTAGACTAGTATTAGTAGTGTTTTTAATTATCCTTTTTCTTTCTGCGAGTATTTAGTGTTATTATCCGAAATAGAGGGAGAAATAAAGAGCATCTGTACA]

[+] EMBL CB617837             [CAAACTTATGTAGCATGCGACATAATTTTTTTTTATGTGAAGCAGTAGTAGACTAGTATTAGTAGTGTTTTTAATTATCCTTTTTCTTTCTGCGAGTATTTAGTGTTATTATCCGAAATAGAGGGAGAAATAAAGAGCATCTGTACA]




>consensus_7737#2
CAAACTTATGTAGCATGCGACATAATTTTTTTTTATGTGAAGCAGTAGTAGACTAGTATT
AGTAGTGTTTTTAATTATCCTTTTTCTTTCTGCGAGTATTTAGTGTTATTATCCGAAATA
GAGGGAGAAATAAAGAGCATCTGTACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7737#0      CGCCGATGCAGCCGTACCCGGCGGCGCCGGCGTACTACAACGCCGCCGCGCCGTCCTACC 60
consensus_7737#1      ------------------------------------------------------------
consensus_7737#2      ------------------------------------------------------------
                                                                                  

consensus_7737#0      CCGTCTACCCCTCCTACGCTGGCTACCCGCAGCAAGAACA-GGATC-CTGGCTGCAGCAT 118
consensus_7737#1      -----------------------------------GAACAAGGATCACTAGCTGCAGCAT 25
consensus_7737#2      ------------------------------------------------------------
                                                                                  

consensus_7737#0      CATGTAAAA-GATTGTGAGTAT-CAATCAGAGGAGCTAGAATCTGGCAAAAACTATGG-A 175
consensus_7737#1      CATGTAAAAAGATTGTGAGTATTCAATCAGAGGAGCTAAAATCTGCAAAAAACTATGGGA 85
consensus_7737#2      ------------------------------------------------------------
                                                                                  

consensus_7737#0      GAATTATTAAGGTATTTGAGTTCA-GAATCAGGC-CAAGGTTTGTGCATGGCTTGAGGTG 233
consensus_7737#1      GAATTATTAAGGTATTTGAGTTCAAGAATCAGGCACAAGGTTTGTCCATGGCTTGAGGTG 145
consensus_7737#2      ------------------------------------------------------------
                                                                                  

consensus_7737#0      -------GATCATGCAAGGTCAGGCCAAGATGATC-CAAGAA-GTTTGCGAGTTTGATCT 284
consensus_7737#1      ATCCGGTGATCATGCATGGTCAGCCCAAGAGGATCACAAGAAAGTTTGCGAG------GT 199
consensus_7737#2      ------------------------------------------------------------
                                                                                  

consensus_7737#0      TTGATGAGCTGCATCATCGATCTGATCTGCAAAGGTGGTGAAAAAAAAGGCAAAATTCTG 344
consensus_7737#1      TTGATGAGCTGCATCATCGATCTGATCTGCAAAGGTGATGAAAAAAAGCGCAAAATTATG 259
consensus_7737#2      ------------------------------------------------------------
                                                                                  

consensus_7737#0      TCGA-ATGCTGCAGCTGAAGAAGTAGCTTTCTGTTCATGCTTTTTTTTTTAAATGTGAAG 403
consensus_7737#1      TCAGCATGCTACAGCTGAAGGA-TAGCTTTCTGTTCATTTTTTTTTTT----ATGTGAAC 314
consensus_7737#2      ----------CAAACTTATG---TAGCATGCGACATAATTTTTTTTT-----ATGTGAAG 42
                                  * ** * *   **** * *     *   *******     ******* 

consensus_7737#0      CACTAGTAGACTAGTA---GTAGTGTTTTCAATTATCCTTTTTCTTTCTGCGAGTATTTA 460
consensus_7737#1      CAGTAGTAGACTAGTATTAGTAGTGTTTTTAATTACCATGTTTCTTTCTGCGAGTATTTA 374
consensus_7737#2      CAGTAGTAGACTAGTATTAGTAGTGTTTTTAATTATCCTTTTTCTTTCTGCGAGTATTTA 102
                      ** *************   ********** ***** * * ********************

consensus_7737#0      GTGTTATTATCCGAAATAGAGGTTGAAATAAAGAGCATCTGTACATTATGCACTCAGTTT 520
consensus_7737#1      GTGTTATTATCCGAAATAGAGGGAGAAATAAAGAGCATCTGTAAAAA------------- 421
consensus_7737#2      GTGTTATTATCCGAAATAGAGGGAGAAATAAAGAGCATCTGTACA--------------- 147
                      **********************  ******************* *               

consensus_7737#0      TTTCTCTGAATTTTATCAGCTTTCAGAGAAGTGCTGAAGATTTGGGACTTGTCGTGTCAC 580
consensus_7737#1      ------------------------------------------------------------
consensus_7737#2      ------------------------------------------------------------
                                                                                  

consensus_7737#0      CTCGTGTATATTGGGTTTGGATGTTTTTAGTTAGGAACCAGAGGT 625
consensus_7737#1      ---------------------------------------------
consensus_7737#2      ---------------------------------------------