cluster # 7746

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Oryza sativa
cluster # 7746 cluster # 7746 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7746#0 length = 807 sequences # 3

consensus_7746#1 length = 760 sequences # 2

consensusID : consensus_7746#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 807
fasta sequence

                              [ACGAGCTGCCTCCTGCCAGTCGATCATGGCGGCCGCATCCTTCTGTTCCAAACGATCTCTCCCATGCCTACTGCTCATATTAGCCGTCTTCTTCCTCGGTTGCTCGTCGCCGGCGACGGCCCGCCGCGTCACCGAGGGCGAACCGGCGACGACGACGACGATGGTGGAGAGGTTCCGGCGGTGGAAGGCGGAGTACAACCGGTCGTACGCCACGGCGGGGGAGGAGCGCCGCCGGCTCCGGGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTACGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATCGCCATGTACACCGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCATCACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGAGTCCGCCGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAAGGACCAAGGGCGATGTGGATCGTGCTGGGCGTTCTCGACGGTGGCGGT-GGTGGAGGGGATACAGAAGATCAAGAAGGGGAAGCTGGTGTCACTGTCGGAGCAGGAGCTGGTCGACTGCGACACGCTCGACAGCGGCTGCGACGGCGGCGTCAGCTACCGGGCGCTGGAGTGGATCACCGCCAACGGCGGCATCACCACCCGCGACGACTACCCCTACACGGCCGCCGCCTCCGCCGCCTGCGACCGCGCCAAGCTGGGGCCACACGC]

[+] EMBL CB645294             [ACGAGCTGCCTCCTGCCAGTCGATCATGGCGGCCGCATCCTTCTGTTCCAAACGATCTCTCCCATGCCTACTGCTCATATTAGCCGTCTTCTTCCTCGGTTGCTCGTCGCCGGCGACGGCCCGCCGCGTCACCGAGGGCGAACCGGCGACGACGACGACGATGGTGGAGAGGTTCCGGCGGTGGAAGGCGGAGTACAACCGGTCGTACGCCACGGCGGGGGAGGAGCGCCGCCGGCTCCGGGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTACGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATCGCCATGTACACCGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCATCACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGAGTCCGCCGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAAGGACCAAGGGCGATGTGGATCGTGCTGGGCGTTCTCGACGGTGGCGGT GGTGGAGGGGATACAGAAGATCAAGAAGGGGAAGCTGGTGTCACTGTCGGAGCAGGAGCTGGTCGACTGCGACACGCTCGACAGCGGCTGCGACGGCGGCGTCAGCTACCGGGCGCTGGAGTGGATCACCGCCAACGGCGGCATCACCACCCGCGACGACTACCCCTACACGGCCGCCGCCTCCGCCGCCTGCGACCGCGCCAAGCTGGGGCCACACGC]
[+] EMBL CB645335             [ACGCGCTGCCTCCTGCCAGTCGATCATGGCGGCCGCATCCTTCTGTTCCAAACGATCTCTCCCATGCCTACTGCTCATATTAGCCGTCTTCTTCCTCGGTTGCTCGTCGCCGGCGACGGCCCGCCGCGTCACCGAGGGCGAACCGGCGACGACGACGACGATGGTGGAGAGGTTCCGGCGGTGGAAGGCGGAGTACAACCGGTCGTACGCCACGGCGGGGGAGGAGCGCCGCCGGCTCCGGGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTACGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATCGCCATGTACACCGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCATCACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGAGTCCGCCGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAAGGACCAAGGGCGATGTGGATCGTGCTGGGCGTTCTCGACGGTGGCGGT GGTGGAGGGGATACAGAAGATCAAGAAGGGGAA                                                                                                                                                                                          ]
[+] EMBL CA754531             [                                    ATCCTTCTGTTCCAAACGATCTCTCCCATGCCTACTGCTCATATTAGCCGTCTTCTTCCTCGGTTGCTCGTCGCCGGCGACGGCCCGCCGCGTCACCGAGGGCGAACCGGCGACGACGACGACGATGGTGGAGAGGTTCCGGCGGTGGAAGGCGGAGTACAACCGGTCGTACGCCACGGCGGGGGAGGAGCGCCGCCGGCTCCGGGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTACGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATCGCCATGTACACCGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCATCACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGAGTCCGCCGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAAGGACCCAGGGCGATGTGGATCGTGCTGGGCGTTCTCCACGGT GCGGTGGGTGGAGGGGATACAGAAGATCAAGAAGGGGAAGCTGGTGTCACTGTCGGAGCA GAGCT                                                                                                                                                               ]




>consensus_7746#0
ACGAGCTGCCTCCTGCCAGTCGATCATGGCGGCCGCATCCTTCTGTTCCAAACGATCTCT
CCCATGCCTACTGCTCATATTAGCCGTCTTCTTCCTCGGTTGCTCGTCGCCGGCGACGGC
CCGCCGCGTCACCGAGGGCGAACCGGCGACGACGACGACGATGGTGGAGAGGTTCCGGCG
GTGGAAGGCGGAGTACAACCGGTCGTACGCCACGGCGGGGGAGGAGCGCCGCCGGCTCCG
GGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTA
CGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATCGCCATGTACAC
CGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCAT
CACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGA
GTCCGCCGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAA
GGACCAAGGGCGATGTGGATCGTGCTGGGCGTTCTCGACGGTGGCGGTGGTGGAGGGGAT
ACAGAAGATCAAGAAGGGGAAGCTGGTGTCACTGTCGGAGCAGGAGCTGGTCGACTGCGA
CACGCTCGACAGCGGCTGCGACGGCGGCGTCAGCTACCGGGCGCTGGAGTGGATCACCGC
CAACGGCGGCATCACCACCCGCGACGACTACCCCTACACGGCCGCCGCCTCCGCCGCCTG
CGACCGCGCCAAGCTGGGGCCACACGC

consensusID : consensus_7746#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 760
fasta sequence

                              [TCATGGCTGCCGCATCCTTCTGTTCCAAACGATCTCTCCCATGCCTACTGCTCATATTAGCCGTCTTCTTCCTCGGTTGCTCGTCGCCGGCGACGGCCCGCCGC---GTCACCGA--G-GGCGAACCGGCGACGACGACGACGATGGTGGAGAGGTTCCGGCGGTGGAAGGCGGAGTACAACCGGTCGTACGCCACGGCGGGGGAGGAGCGCCGCCGGCTCCGGGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTACGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATCGCCATGTACACCGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCATCACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGAGTCCGCCGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAAGGACCAAGGGCGATGTGGTACGCACTACTCCAGCTAGCTAACACGTCAACCTCTCAATTATTTCATTTTTTAGATAATAATAAACTCTCAATTATTTGTGACCTCTCTGTAAACACATGGCTCGCTACTAACCACATGTGCCCCCTGTCTCTTTCATTATGCGACCCAAATGCATAATAATAATACTCCCTTTCTCTCTGTTTTTTCATAAAGTTTTATTTTTCGTTTAATTCGAATCTAGCA]

[+] EMBL CB650322             [TCATGGCTGCCGCATCCTTCTGTTCCAAACGATCTCTCCCATGCCTACTGCTCATATTAGCCGTCTTCTTCCTCGGTTGCTCGTCGCCGGCGACGGCCCGCCGC   GTCACCGA  G GGCGAACCGGCGACGACGACGACGATGGTGGAGAGGTTCCGGCGGTGGAAGGCGGAGTACAACCGGTCGTACGCCACGGCGGGGGAGGAGCGCCGCCGGCTCCGGGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTACGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATCGCCATGTACACCGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCATCACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGAGTCCGCCGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAAGGACCAAGGGCGATGTGGTACGCACTACTCCAGCTAGCTAACACGTCAACCTCTCAATTATTTCATTTTTTAGATAATAATAAACTCTCAATTATTTGTGACCTCTCTGTAAACACATGGCTCGCTACTAACCACATGTGCCCCCTGTCTCTTTCATTATGCGACCCAAATGCATAATAATAATACTCCCTTTCTCTCTGTTTTTTCATAAAGTTTTATTTTTCGTTTAATTCGAATCTAGCA]
[-] EMBL BI810472             [                    TGTTCCAAACGATCTCTCCCATGCCTACTGCTCGTACTAGCCGTCTTCTTCCTCGGTTGCTCGTCGTCGGCGACGGCCCGTCGCGTTGTCACCGACGGCGGCGAACCGG   CGACGACGACGATGGTGGAGAGGTTCCAGCGGTGGAAGGCGGAGTACAACCGGTCGTACGCCACGCCCGGGGAGGAGCGCCGCCGGCTCCGGGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTACGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATTGCCATGTACACCGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCATCACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGAGTCCG CGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAAGGACCAAGGGCGATGT                                                                                                                                                                                                                                   ]




>consensus_7746#1
TCATGGCTGCCGCATCCTTCTGTTCCAAACGATCTCTCCCATGCCTACTGCTCATATTAG
CCGTCTTCTTCCTCGGTTGCTCGTCGCCGGCGACGGCCCGCCGCGTCACCGAGGGCGAAC
CGGCGACGACGACGACGATGGTGGAGAGGTTCCGGCGGTGGAAGGCGGAGTACAACCGGT
CGTACGCCACGGCGGGGGAGGAGCGCCGCCGGCTCCGGGTGTACGCGCGCAACGTGCGGT
ACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTACGAGCTCGGCGAGACGGCCTACA
CCGACCTCACCAACGACGAGTTCATCGCCATGTACACCGCGCCGCCGCCGCTGCGGTCGT
CAGACGGCGACGACGACGACGCGGCGACGACGATCATCACCACGCGCGCCGGGCCGGTGG
ACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGAGTCCGCCGGCGCGCCGGCGAGCG
TTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAAGGACCAAGGGCGATGTGGTACGC
ACTACTCCAGCTAGCTAACACGTCAACCTCTCAATTATTTCATTTTTTAGATAATAATAA
ACTCTCAATTATTTGTGACCTCTCTGTAAACACATGGCTCGCTACTAACCACATGTGCCC
CCTGTCTCTTTCATTATGCGACCCAAATGCATAATAATAATACTCCCTTTCTCTCTGTTT
TTTCATAAAGTTTTATTTTTCGTTTAATTCGAATCTAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7746#0      ACGAGCTGCCTCCTGCCAGTCGATCATGGCGGCCGCATCCTTCTGTTCCAAACGATCTCT 60
consensus_7746#1      -----------------------TCATGGCTGCCGCATCCTTCTGTTCCAAACGATCTCT 37
                                             ******* *****************************

consensus_7746#0      CCCATGCCTACTGCTCATATTAGCCGTCTTCTTCCTCGGTTGCTCGTCGCCGGCGACGGC 120
consensus_7746#1      CCCATGCCTACTGCTCATATTAGCCGTCTTCTTCCTCGGTTGCTCGTCGCCGGCGACGGC 97
                      ************************************************************

consensus_7746#0      CCGCCGCGTCACCGAGGGCGAACCGGCGACGACGACGACGATGGTGGAGAGGTTCCGGCG 180
consensus_7746#1      CCGCCGCGTCACCGAGGGCGAACCGGCGACGACGACGACGATGGTGGAGAGGTTCCGGCG 157
                      ************************************************************

consensus_7746#0      GTGGAAGGCGGAGTACAACCGGTCGTACGCCACGGCGGGGGAGGAGCGCCGCCGGCTCCG 240
consensus_7746#1      GTGGAAGGCGGAGTACAACCGGTCGTACGCCACGGCGGGGGAGGAGCGCCGCCGGCTCCG 217
                      ************************************************************

consensus_7746#0      GGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTA 300
consensus_7746#1      GGTGTACGCGCGCAACGTGCGGTACATCGAGGCGACGAACGCGGCGGCGGGGCTCGCGTA 277
                      ************************************************************

consensus_7746#0      CGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATCGCCATGTACAC 360
consensus_7746#1      CGAGCTCGGCGAGACGGCCTACACCGACCTCACCAACGACGAGTTCATCGCCATGTACAC 337
                      ************************************************************

consensus_7746#0      CGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCAT 420
consensus_7746#1      CGCGCCGCCGCCGCTGCGGTCGTCAGACGGCGACGACGACGACGCGGCGACGACGATCAT 397
                      ************************************************************

consensus_7746#0      CACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGA 480
consensus_7746#1      CACCACGCGCGCCGGGCCGGTGGACGAACACAACCTGCAGCCGGAGGTGTACTTCAACGA 457
                      ************************************************************

consensus_7746#0      GTCCGCCGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAA 540
consensus_7746#1      GTCCGCCGGCGCGCCGGCGAGCGTTGACTGGCGGGCGAGCGGCGCCGTGACGGAGGTGAA 517
                      ************************************************************

consensus_7746#0      GGACCAAGGGCGATGTGGATCGTGCTGGGC--GTTCTCGACGGTGGCGGTGGTGGAGGGG 598
consensus_7746#1      GGACCAAGGGCGATGTGGTACGCACTACTCCAGCTAGCTAACACGTCAACCTCTCAATTA 577
                      ******************  **  **   *  * *  * *    * *        *    

consensus_7746#0      ATACAGAAGATCAAGAAGGGGAAGCTGGTGTCACTGTCGGAGCAGGAGCTGGTCGACTGC 658
consensus_7746#1      TTTCATTTTTTAGATAATAATAAACT--CTCAATTATTTGTGACCTCTCTGTAAACACAT 635
                       * **     *  * **    ** **      * * *  * *      ***         

consensus_7746#0      GACACGCTCGACAGCGGCTGCGACGGCGGCGTCAGCTACCGGGCG-CTGGAGTGGATCAC 717
consensus_7746#1      GGCTCGCTACTAACCACATGTGCCCCCTGTCTCTTTCATTATGCGACCCAAATGCAT--- 692
                      * * ****    * *   ** * *  * *  **    *    *** *   * ** **   

consensus_7746#0      CGCCAACGGCGGCATCACCACCCGCGACGACTACCCCTACACGGCCGCCGCCTCCGCCGC 777
consensus_7746#1      ----AATAATAATACTCCCTTTCTCTCTGTTT--TTTCATAAAGTTTTATTTTTCGTTTA 746
                          **       *   **   * *   *  *      * *  *        * **    

consensus_7746#0      CTGCGACCGCGCCAAGCTGGGGCCACACGC 807
consensus_7746#1      ATTCGAATCTAGCA---------------- 760
                       * ***      **