These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7747#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 774 fasta sequence [TCTTTTTTTTTTTTTTAGATCCATTCTATCGATGCTCCCTTGTGCTAGATTTATGGCACATCAAATTCTTACAAGTTACAGCATCACATATACCGTAGCAAGCAGATCAAAATGGACCAAACCTACTTACCCATATACAAATCTGACCATATATATATACAGTTTCTCTTGCAGAGCAAAAGTATGTTCCTATATATTAAAGGGCTGAAGATGAGTACTAAAAAACACACACCTTCATATATATTCACGGCAAGAGCTGCACATAACCAGTCAGGACTGCAATAGCTAAGATGGCCAATGGCGGCACTAGGACAAATGCGCCAACGGTGGCGAAGAACACTGAGTCGTTCCGTCCACTGACCTTGGTGAGCAGGGCCTGCCTCTTGATGTTCCTCCTCTGGGAGACGGTCAGGGAGTTGAGTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGTCACCGATAACCGCTGAAAGTTGCTCACGAATAGTAGTTTGCACACGGGGTTCTGTAGGAGCACCGTTCTCCACGCCAATGCCATCAGATGTAGGGGTTGTCAGCTGCTCCAGGAGATCCAACTGGGTGCGCGCCGAAGAAACTTCAGAACAAAATGTGTCAATGTTAAGCCATTTGGCAACAAAAGTAGCTTCATGGGAACAAGTAGGCTATATGTTCAATACTTCAATGCAACAAAATGAACTAATAATATATTGTAGTACCCATACTTCAAATCCCTGGACTATGTAGCTAC] [+] EMBL CB625760 [TCTTTTTTTTTTTTTTAGATCCATTCTATCGATGCTCCCTTGTGCTAGATTTATGGCACATCAAATTCTTACAAGTTACAGCATCACATATACCGTAGCAAGCAGATCAAAATGGACCAAACCTACTTACCCATATACAAATCTGACCATATATATATACAGTTTCTCTTGCAGAGCAAAAGTATGTTCCTATATATTAAAGGGCTGAAGATGAGTACTAAAAAACACACACCTTCATATATATTCACGGCAAGAGCTGCACATAACCAGTCAGGACTGCAATAGCTAAGATGGCCAATGGCGGCACTAGGACAAATGCGCCAACGGTGGCGAAGAACACTGAGTCGTTCCGTCCACTGACCTTGGTGAGCAGGGCCTGCCTCTTGATGTTCCTCCTCTGGGAGACGGTCAGGGAGTTGAGTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGTCACCGATAACCGCTGAAAGTTGCTCACGAATAGTAGTTTGCACACGGGGTTCTGTAGGAGCACCGTTCTCCACGCCAATGCCATCAGATGTAGGGGTTGTCAGCTGCTCCAGGAGATCCAACTGGGTGCGCGCCGAAGAAACTTCAGAACAAAATGTGTCAATGTTAAGCCATTTGGCAACAAAAGTAGCTTCATGGGAACAAGTAGGCTATATGTTCAATACTTCAATGCAACAAAATGAACTAATAATATATTGTAGTACCCATACTTCAAATCCCTGGACTATGTAGCTAC] [-] EMBL BM420208 [ TTTTTTTTTTAGATCCATTCTATCGATGCTCCCTTGTGCTAGATTTATGGCACATCAAATTCTTACAAGTTACAGCATCACATATACCGTAGCAAGCAGATCAAAATGGACCAAACCTACTTACCCATATACAAATCTGACCATATATATATACAGTTTCTCTTGCAGAGCAAAAGTATGTTCCTATATATTAAAGGTCTGAAGATGAGTACTAAAAAACACACACCTTCATATATATTCACGGCAAGAGCTGCACATAACCAGTCAGGACTGCAATAGCTAAGATGGCCAATGGCGGCACTAGGACAAATGCGCCAACGGTGGCGAAGAACACTGAGTCGTTCCGTCCACTGACCTTGGTGAGCAGGGCCTGCCTCTTGATGTTCCTCCTCTGGGAGACGGTCAGGGAGTTGAGTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGTCACCGATAACCGCTGAAAGTTGCTCAC ] consensusID : consensus_7747#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 449 fasta sequence [CCTTCATATATATTCACGGCAAGAGCTGCACATAACCAGTCAGGACTGCAATAGCTAAGATGGCCAATGGCGGCACTAGGACAAATGCGCCAACGGTGGCGAAGAACACTGAGTCATTCCGTCCACTGACCTTGGTGAGCAGGGCCTGCCTCTTGATGTTCCTCCTCTGGGAGACGGTCAGGGAGTTGAGTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGTCACCGATAACCGCTGAAAGTTGCTCACGAATAGTAGTTTGCACACGGGGTTCTGTAGGAGCACCGTTCTCCACGCCAATGCCATCAGATGTAGGGGTTGTCAGCTGCTCCAGGAGATCCAACTGGGTGCGCGCCGAAGAAACTGAGATGGCGGGGTCCTGCGTCGCGCCTTCCTGCCGGGCGGCAGCCGCGGCCTTGCAC] [-] EMBL CF325024 [CCTTCATATATATTCACGGCAAGAGCTGCACATAACCAGTCAGGACTGCAATAGCTAAGATGGCCAATGGCGGCACTAGGACAAATGCGCCAACGGTGGCGAAGAACACTGAGTCATTCCGTCCACTGACCTTGGTGAGCAGGGCCTGCCTCTTGATGTTCCTCCTCTGGGAGACGGTCAGGGAGTTGAGTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGTCACCGATAACCGCTGAAAGTTGCTCACGAATAGTAGTTTGCACACGGGGTTCTGTAGGAGCACCGTTCTCCACGCCAATGCCATCAGATGTAGGGGTTGTCAGCTGCTCCAGGAGATCCAACTGGGTGCGCGCCGAAGAAACTGAGATGGCGGGGTCCTGCGTCGCGCCTTCCTGCCGGGCGGCAGCCGCGGCCTTGCAC] [-] EMBL CF325438 [ ATATATATTCACGGCAAGAGCTGCACATAACCAGTCAGGACTGCAATAGCTAAGATGGCCAATGGCGGCACTAGGACAAATGCGCCAACGGTGGCGAAGAACACTGAGTCATTCCGTCCACTGACCTTGGTGAGCAGGGCCTGCCTCTTGATGTTCCTCCTCTGGGAGACGGTCAGGGAGTTGAGTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGTCACCGATAACCGCTGAAAGTTGCTCACGAATAGTAGTTTGCACACGGGGTTCTGTAGGAGCACCGTTCTCCACGCCAATGCCATCAGATGTAGGGGTTGTCAGCTGCTCCAGGAGATCCAACTGGGTGCGCGCCGAAGAAACTGAGATGGCGGGGTCCTGCGTCGCGCCTTCCTGCCGGGCGGCAGCCGCGGCCTTGCAC] [-] EMBL CF325002 [ GTTGAGTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGTCACCGATAACCGCTGAAAGTTGCTCACGAATAGTAGTTTGCACACGGGGTTCTGTAGGAGCACCGTTCTCCACGCCAATGCCATCAGATGTAGGGGTTGTCAGCTGCTACAGGAGATCCAACTGGGTGCGCGCCGAAGAAACTGAGATGGCGGGGTCCTGCGTCGCGCCTTCCTGCCGGGCGGCAGCCGCGGCCTTGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7747#0 TCTTTTTTTTTTTTTTAGATCCATTCTATCGATGCTCCCTTGTGCTAGATTTATGGCACA 60 consensus_7747#1 ------------------------------------------------------------ consensus_7747#0 TCAAATTCTTACAAGTTACAGCATCACATATACCGTAGCAAGCAGATCAAAATGGACCAA 120 consensus_7747#1 ------------------------------------------------------------ consensus_7747#0 ACCTACTTACCCATATACAAATCTGACCATATATATATACAGTTTCTCTTGCAGAGCAAA 180 consensus_7747#1 ------------------------------------------------------------ consensus_7747#0 AGTATGTTCCTATATATTAAAGGGCTGAAGATGAGTACTAAAAAACACACACCTTCATAT 240 consensus_7747#1 ---------------------------------------------------CCTTCATAT 9 ********* consensus_7747#0 ATATTCACGGCAAGAGCTGCACATAACCAGTCAGGACTGCAATAGCTAAGATGGCCAATG 300 consensus_7747#1 ATATTCACGGCAAGAGCTGCACATAACCAGTCAGGACTGCAATAGCTAAGATGGCCAATG 69 ************************************************************ consensus_7747#0 GCGGCACTAGGACAAATGCGCCAACGGTGGCGAAGAACACTGAGTCGTTCCGTCCACTGA 360 consensus_7747#1 GCGGCACTAGGACAAATGCGCCAACGGTGGCGAAGAACACTGAGTCATTCCGTCCACTGA 129 ********************************************** ************* consensus_7747#0 CCTTGGTGAGCAGGGCCTGCCTCTTGATGTTCCTCCTCTGGGAGACGGTCAGGGAGTTGA 420 consensus_7747#1 CCTTGGTGAGCAGGGCCTGCCTCTTGATGTTCCTCCTCTGGGAGACGGTCAGGGAGTTGA 189 ************************************************************ consensus_7747#0 GTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGT 480 consensus_7747#1 GTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGT 249 ************************************************************ consensus_7747#0 CACCGATAACCGCTGAAAGTTGCTCACGAATAGTAGTTTGCACACGGGGTTCTGTAGGAG 540 consensus_7747#1 CACCGATAACCGCTGAAAGTTGCTCACGAATAGTAGTTTGCACACGGGGTTCTGTAGGAG 309 ************************************************************ consensus_7747#0 CACCGTTCTCCACGCCAATGCCATCAGATGTAGGGGTTGTCAGCTGCTCCAGGAGATCCA 600 consensus_7747#1 CACCGTTCTCCACGCCAATGCCATCAGATGTAGGGGTTGTCAGCTGCTCCAGGAGATCCA 369 ************************************************************ consensus_7747#0 ACTGGGTGCGCGCCGAAGAAACTTCAGAACAAAATGTGTCAATGTTAAGCCATTTGGC-- 658 consensus_7747#1 ACTGGGTGCGCGCCGAAGAAACT--GAGATGGCGGGGTCCTGCGTCGCGCCTTCCTGCCG 427 *********************** * * * ** *** * ** consensus_7747#0 AACAAAAGTAGCTTCATGGGAACAAGTAGGCTATATGTTCAATACTTCAATGCAACAAAA 718 consensus_7747#1 GGCGGCAGCCGCGGCCTTGCAC-------------------------------------- 449 * ** ** * * * * consensus_7747#0 TGAACTAATAATATATTGTAGTACCCATACTTCAAATCCCTGGACTATGTAGCTAC 774 consensus_7747#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||