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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7749#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1594 fasta sequence
[TTTTTTTCGCAGTCTCTTCATCCGTCTCGCATCCATTCCCCCGCCTCCCGCCATTTCAACCCGCCCCCAATTCCAAAACCCTCGCCTCCTCCAACAACGCGCCCCCAAACCCTAACCCTAGGAGAGGGCGCGGCGGCGGCGGCGGCGGGGGGCGAGATGCCGAAGGCTACGGCGGCGGAGGAGGAGGAGTTCCGGGCGGAGGTGGAGGAGCGGCTGATCAACGAGGAGTACAAGATCTGGAAGAAGAACACCCCGTTCCTGTACGACCTCGTCATCACCCATGCCCTGGAGTGGCCGTCCCTCACCGTGCAGTGGCTCCCCGACCGCGCTGAGCCCGCTGGGAAGGACCACTCCGTCCAGAAGATGGTGCTCGGCACCCACACCTCCGACAACGAGCCCAACTACCTCATGCTCGCCCAGGTCCAGCTCCCCCTCGACGACGCCGAGGCCGACGCGCGCCACTACGACGACGACCACGCCGAGATCGGGGGCTTCGGCGCCGCCTCCGGCAAGGTGCAAATAGTTCAACAGATAAATCATGATGGAGAGGTTAATCGAGCTCGGTATATGCCCCAGAATTCATTTATAATTGCTACCAAGACAGTCAGTGCAGAAGTATATGTCTTTGATTATAGCAAGCACCCATCAAAGCCTCCATTGGATGGTGCATGCAATCCTGACTTACGGCTGAAGGGACATAACTCTGAAGGATATGGACTGTCTTGGAGTATATTTAAGGAGGGCCATTTGTTGAGTGGATCTGATGATGCTCAAATTTGCTTATGGGACATCAAAGCAAATAGTAAAAACAAAACCCTTGACGCTCTTCAGATTTTTAAGTATCATGATGGTGTCGTTGAAGATGTTGCCTGGCATTTGAGGCATGAATACTTGTTTGGCTCAGTTGGTGATGATCACAATTTGCTAATTTGGGATTTACGTTCTCCTGTGTCTACTAAGCCTGTACAGTCTGTGGCGGCACACCAGGGTGAGGTGAATTGTCTGGCTTTCAACCCCTTCAATGAATGGGTTGTTGCAACTGGTTCAACTGACAAGACCGTGAAACTATTTGATCTTCGGAAGATTGATGCTTCCCTACACACCTTTGATTGCCACAAGGAGGAAGTATTTCAAGTTGGATGGAGCCCAAAGAATGAGACTATACTTGCATCTTGTTGTCTTGGCAGAAGGTTAATGGTCTGGGATTTAAGCAGGATTGACCAGGAACAGACACCGGAGGATGCGGAAGATGGTCCTCCGGAGCTCCTGTTCATTCATGGAGGCCATACAAGCAAGATCTCCGACTTCTCCTGGAACCCGTGCGAGGACTGGGTGATTGCTAGCGTCGCTGAGGACAACATCCTTCAGATATGGCAAATGGCAGAGAACATCTACCATGACGAGGATGATGTGCCGACTGATGACCCGGCCAAGGCTCCCTGAAAACCTCCGGTAGGAAAACCAAAAATGAACAAAATAAAACCTTAACTGTGTGACTTTAGGTACCCTCCTTTGTTGTAAGTTGTTGGCCTGGTTGGCAGTTTACAAACAGAATGTCAGTCGTAATACATTCCAGTTGCAAAAAAAAGGGAAA]
[+] EMBL AK059114 [TTTTTTTCGCAGTCTCTTCATCCGTCTCGCATCCATTCCCCCGCCTCCCGCCATTTCAACCCGCCCCCAATTCCAAAACCCTCGCCTCCTCCAACAACGCGCCCCCAAACCCTAACCCTAGGAGAGGGCGCGGCGGCGGCGGCGGCGGGGGGCGAGATGCCGAAGGCTACGGCGGCGGAGGAGGAGGAGTTCCGGGCGGAGGTGGAGGAGCGGCTGATCAACGAGGAGTACAAGATCTGGAAGAAGAACACCCCGTTCCTGTACGACCTCGTCATCACCCATGCCCTGGAGTGGCCGTCCCTCACCGTGCAGTGGCTCCCCGACCGCGCTGAGCCCGCTGGGAAGGACCACTCCGTCCAGAAGATGGTGCTCGGCACCCACACCTCCGACAACGAGCCCAACTACCTCATGCTCGCCCAGGTCCAGCTCCCCCTCGACGACGCCGAGGCCGACGCGCGCCACTACGACGACGACCACGCCGAGATCGGGGGCTTCGGCGCCGCCTCCGGCAAGGTGCAAATAGTTCAACAGATAAATCATGATGGAGAGGTTAATCGAGCTCGGTATATGCCCCAGAATTCATTTATAATTGCTACCAAGACAGTCAGTGCAGAAGTATATGTCTTTGATTATAGCAAGCACCCATCAAAGCCTCCATTGGATGGTGCATGCAATCCTGACTTACGGCTGAAGGGACATAACTCTGAAGGATATGGACTGTCTTGGAGTATATTTAAGGAGGGCCATTTGTTGAGTGGATCTGATGATGCTCAAATTTGCTTATGGGACATCAAAGCAAATAGTAAAAACAAAACCCTTGACGCTCTTCAGATTTTTAAGTATCATGATGGTGTCGTTGAAGATGTTGCCTGGCATTTGAGGCATGAATACTTGTTTGGCTCAGTTGGTGATGATCACAATTTGCTAATTTGGGATTTACGTTCTCCTGTGTCTACTAAGCCTGTACAGTCTGTGGCGGCACACCAGGGTGAGGTGAATTGTCTGGCTTTCAACCCCTTCAATGAATGGGTTGTTGCAACTGGTTCAACTGACAAGACCGTGAAACTATTTGATCTTCGGAAGATTGATGCTTCCCTACACACCTTTGATTGCCACAAGGAGGAAGTATTTCAAGTTGGATGGAGCCCAAAGAATGAGACTATACTTGCATCTTGTTGTCTTGGCAGAAGGTTAATGGTCTGGGATTTAAGCAGGATTGACCAGGAACAGACACCGGAGGATGCGGAAGATGGTCCTCCGGAGCTCCTGTTCATTCATGGAGGCCATACAAGCAAGATCTCCGACTTCTCCTGGAACCCGTGCGAGGACTGGGTGATTGCTAGCGTCGCTGAGGACAACATCCTTCAGATATGGCAAATGGCAGAGAACATCTACCATGACGAGGATGATGTGCCGACTGATGACCCGGCCAAGGCTCCCTGAAAACCTCCGGTAGGAAAACCAAAAATGAACAAAATAAAACCTTAACTGTGTGACTTTAGGTACCCTCCTTTGTTGTAAGTTGTTGGCCTGGTTGGCAGTTTACAAACAGAATGTCAGTCGTAATACAT ]
[+] EMBL CB655981 [ AGGACCAATCCGTCCAGAAGATGGTGCTCGGCACCCACACCTCCGACAAGGAGCCCAACTACCTCATGCTCGCCCAGGACCAGCTCCCCCTCGACGACGCCGAGGCCGACGCGCGCCACTACGACGACGACCACGCCGAGATCGGGGGCTTCGGCGCCGCCTCCGGCAAGGGGCGAATAGCTCAACAGATAAATCATGATGGAGAGGCTAATCCAGCTCGGTATATGCCCCAGAATTCATTTATAATTGCTACCAAGACAGTCAGTGCAGAAGTATATGGCTTTGATTATAGCAAGCACCCATCAAAGCCTCCATTGGATGGTGCATGCAATCCTGACTTACGGCTGAAGGGACATAACTCTGAAGGATATGGACTGTCTTGGAGTATATTTAAGGAGGGCCATTTGTTGAGTGGATCTGATGATGCTCAAATTTGCTTATGGGACATCAAAGCAAATAGTAAAAACAAAACCCTTGACGCTCTTCAGATTTTTAAGTATCATGATGGTGTCGTTGAAGATGTTGCCTGGCATTTGAGGCATGAATACTTGTTTGGCTCACTTGGTGATGATCACAATTTGCTAATTTGGGATTTACGTTCTCCTGTGTCTACTAAGCCTGTACAGTCTGTGGCGGCACACCAGGGTGAGGTGAATTGTCTGGCTTTCAACCCCTTCAATGAATGGG ]
[-] EMBL CA882903 [ GCGGCACACCAGGGTGAGGTGAATTGTCTGGCTTTCAACCCCTTCAATGAATGGGTTGTTGCAACTGGTTCAACTGACAAGACCGTGAAACTATTTGATCTTCGGAAGATTGATACTTCCCTACACACCTTTGATTGCCACAAGGAGGAAGTATTTCAAGTTGGATGGAGCCCAAAGAATGAGACTATACTTGCATCTTGTTGTCTTGGCAGAAGGTTAATGGTCTGGGATTTAAGCAGGATTGACCAGGAACAGACACCGGAGGATGCGGAAGATGGTCCTCCGGAGCTCCTGTTCATTCATGGAGGCCATACAAGCAAGATCTCCGACTTCTCCTGGAACCCGTGCGAGGACTGGGTGATTGCTAGCGTCGCTGAGGACAACATCCTTCAGATATGGCAAATGGCAGAGAACATCTACCATGACGAGGATGATGTGCCGACTGATGACCCGGCCAAGGCTCCCTGAAAACCTCCGGTAGGAAAACCAAAAATGAACAAAATAAAACCTTAACTGTGTGACTTTA ]
[-] EMBL CB655982 [ GATTGCCACAAGGAGGAAGTATTTCAAGTTGGATGGAGCCCAAAGAATGAGACTATACTTGCATCTTGTTGTCTTGGCAGAAGGTTAATGGTGTGGGATTTAAGCAGGATTGACCAGGAACAGACACCGGAGGATGCGGAAGATGGTCCTCCGGAGCTCCTGTTCATTCATGGAGGCCATACAAGCAAGATCTCCGACTTCTCCTGGAACCCGTGCGAGGAATGGGTGATTGTTAGCGTCGCTGAGGACAACATCCTTCAGATATGGCAAATGGCAGAGAACATCTACCATGACGAGGATGATGTGCCGACTGATGACCCGGCCAAGGCTCCTTGAAAACCTCCGGTAGGAAAACCAAAAATGAACAAAATAAAACCTTAACTGTGTGACTTTAGGTACCCTCCTTTGTTGTAAGTTGTTGGCCTGGTTGGCAGTTTACAAAAGGAATGTCAGTCGTAATACATTCCAGTTGCAAAAAAAAGGGAAA]
consensusID : consensus_7749#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence
[TTTGATTGCCACAAGGAGGAAGCATTTCAAGTTGGATGGAGCCCAAAGAATGAGACTATACTTGCATCTTGTTGTCTTGGCAGAAGGTTAACTGGTCTGGGATTTAAGCAAGGTTTTTCCCAGTAACAGTCACCGGAGTACTGCGGAAGATGGTCCTCCGGAGCTCCTGTCCATTCATGGAGGCCATACAAGCAAGATCTCCGACTTCTCCTGGAACCCGTGCGAGGCCTTGTTGATTGCTAGCTTCGCTGAGGACAACATCCTTCAGATATGGCAATTGGCAAGAGAACATTTCCCATGTTGTAGGTTGATGTGC]
[+] EMBL OSEN20522 [TTTGATTGCCACAAGGAGGAAGCATTTCAAGTTGGATGGAGCCCAAAGAATGAGACTATACTTGCATCTTGTTGTCTTGGCAGAAGGTTAACTGGTCTGGGATTTAAGCAAGGTTTTTCCCAGTAACAGTCACCGGAGTACTGCGGAAGATGGTCCTCCGGAGCTCCTGTCCATTCATGGAGGCCATACAAGCAAGATCTCCGACTTCTCCTGGAACCCGTGCGAGGCCTTGTTGATTGCTAGCTTCGCTGAGGACAACATCCTTCAGATATGGCAATTGGCAAGAGAACATTTCCCATGTTGTAGGTTGATGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7749#0 TTTTTTTCGCAGTCTCTTCATCCGTCTCGCATCCATTCCCCCGCCTCCCGCCATTTCAAC 60
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 CCGCCCCCAATTCCAAAACCCTCGCCTCCTCCAACAACGCGCCCCCAAACCCTAACCCTA 120
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 GGAGAGGGCGCGGCGGCGGCGGCGGCGGGGGGCGAGATGCCGAAGGCTACGGCGGCGGAG 180
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 GAGGAGGAGTTCCGGGCGGAGGTGGAGGAGCGGCTGATCAACGAGGAGTACAAGATCTGG 240
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 AAGAAGAACACCCCGTTCCTGTACGACCTCGTCATCACCCATGCCCTGGAGTGGCCGTCC 300
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 CTCACCGTGCAGTGGCTCCCCGACCGCGCTGAGCCCGCTGGGAAGGACCACTCCGTCCAG 360
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 AAGATGGTGCTCGGCACCCACACCTCCGACAACGAGCCCAACTACCTCATGCTCGCCCAG 420
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 GTCCAGCTCCCCCTCGACGACGCCGAGGCCGACGCGCGCCACTACGACGACGACCACGCC 480
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 GAGATCGGGGGCTTCGGCGCCGCCTCCGGCAAGGTGCAAATAGTTCAACAGATAAATCAT 540
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 GATGGAGAGGTTAATCGAGCTCGGTATATGCCCCAGAATTCATTTATAATTGCTACCAAG 600
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 ACAGTCAGTGCAGAAGTATATGTCTTTGATTATAGCAAGCACCCATCAAAGCCTCCATTG 660
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 GATGGTGCATGCAATCCTGACTTACGGCTGAAGGGACATAACTCTGAAGGATATGGACTG 720
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 TCTTGGAGTATATTTAAGGAGGGCCATTTGTTGAGTGGATCTGATGATGCTCAAATTTGC 780
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 TTATGGGACATCAAAGCAAATAGTAAAAACAAAACCCTTGACGCTCTTCAGATTTTTAAG 840
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 TATCATGATGGTGTCGTTGAAGATGTTGCCTGGCATTTGAGGCATGAATACTTGTTTGGC 900
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 TCAGTTGGTGATGATCACAATTTGCTAATTTGGGATTTACGTTCTCCTGTGTCTACTAAG 960
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 CCTGTACAGTCTGTGGCGGCACACCAGGGTGAGGTGAATTGTCTGGCTTTCAACCCCTTC 1020
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 AATGAATGGGTTGTTGCAACTGGTTCAACTGACAAGACCGTGAAACTATTTGATCTTCGG 1080
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 AAGATTGATGCTTCCCTACACACCTTTGATTGCCACAAGGAGGAAGTATTTCAAGTTGGA 1140
consensus_7749#1 ------------------------TTTGATTGCCACAAGGAGGAAGCATTTCAAGTTGGA 36
********************** *************
consensus_7749#0 TGGAGCCCAAAGAATGAGACTATACTTGCATCTTGTTGTCTTGGCAGAAGGTTAA-TGGT 1199
consensus_7749#1 TGGAGCCCAAAGAATGAGACTATACTTGCATCTTGTTGTCTTGGCAGAAGGTTAACTGGT 96
******************************************************* ****
consensus_7749#0 CTGGGATTTAAGCAGGATTGA--CCAGGAACAGACACCGGAGGA-TGCGGAAGATGGTCC 1256
consensus_7749#1 CTGGGATTTAAGCAAGGTTTTTCCCAGTAACAGTCACCGGAGTACTGCGGAAGATGGTCC 156
************** * ** **** ***** ******** * ***************
consensus_7749#0 TCCGGAGCTCCTGTTCATTCATGGAGGCCATACAAGCAAGATCTCCGACTTCTCCTGGAA 1316
consensus_7749#1 TCCGGAGCTCCTGTCCATTCATGGAGGCCATACAAGCAAGATCTCCGACTTCTCCTGGAA 216
************** *********************************************
consensus_7749#0 CCCGTGCGAGGACTGGGTGATTGCTAGCGTCGCTGAGGACAACATCCTTCAGATATGGCA 1376
consensus_7749#1 CCCGTGCGAGGCCTTGTTGATTGCTAGCTTCGCTGAGGACAACATCCTTCAGATATGGCA 276
*********** ** * *********** *******************************
consensus_7749#0 AATGGCA-GAGAACATCTACCATGACG-AGGATGATGTGCCGACTGATGACCCGGCCAAG 1434
consensus_7749#1 ATTGGCAAGAGAACATTTCCCATGTTGTAGGTTGATGTGC-------------------- 316
* ***** ******** * ***** * *** ********
consensus_7749#0 GCTCCCTGAAAACCTCCGGTAGGAAAACCAAAAATGAACAAAATAAAACCTTAACTGTGT 1494
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 GACTTTAGGTACCCTCCTTTGTTGTAAGTTGTTGGCCTGGTTGGCAGTTTACAAACAGAA 1554
consensus_7749#1 ------------------------------------------------------------
consensus_7749#0 TGTCAGTCGTAATACATTCCAGTTGCAAAAAAAAGGGAAA 1594
consensus_7749#1 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||