These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7749#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1594 fasta sequence [TTTTTTTCGCAGTCTCTTCATCCGTCTCGCATCCATTCCCCCGCCTCCCGCCATTTCAACCCGCCCCCAATTCCAAAACCCTCGCCTCCTCCAACAACGCGCCCCCAAACCCTAACCCTAGGAGAGGGCGCGGCGGCGGCGGCGGCGGGGGGCGAGATGCCGAAGGCTACGGCGGCGGAGGAGGAGGAGTTCCGGGCGGAGGTGGAGGAGCGGCTGATCAACGAGGAGTACAAGATCTGGAAGAAGAACACCCCGTTCCTGTACGACCTCGTCATCACCCATGCCCTGGAGTGGCCGTCCCTCACCGTGCAGTGGCTCCCCGACCGCGCTGAGCCCGCTGGGAAGGACCACTCCGTCCAGAAGATGGTGCTCGGCACCCACACCTCCGACAACGAGCCCAACTACCTCATGCTCGCCCAGGTCCAGCTCCCCCTCGACGACGCCGAGGCCGACGCGCGCCACTACGACGACGACCACGCCGAGATCGGGGGCTTCGGCGCCGCCTCCGGCAAGGTGCAAATAGTTCAACAGATAAATCATGATGGAGAGGTTAATCGAGCTCGGTATATGCCCCAGAATTCATTTATAATTGCTACCAAGACAGTCAGTGCAGAAGTATATGTCTTTGATTATAGCAAGCACCCATCAAAGCCTCCATTGGATGGTGCATGCAATCCTGACTTACGGCTGAAGGGACATAACTCTGAAGGATATGGACTGTCTTGGAGTATATTTAAGGAGGGCCATTTGTTGAGTGGATCTGATGATGCTCAAATTTGCTTATGGGACATCAAAGCAAATAGTAAAAACAAAACCCTTGACGCTCTTCAGATTTTTAAGTATCATGATGGTGTCGTTGAAGATGTTGCCTGGCATTTGAGGCATGAATACTTGTTTGGCTCAGTTGGTGATGATCACAATTTGCTAATTTGGGATTTACGTTCTCCTGTGTCTACTAAGCCTGTACAGTCTGTGGCGGCACACCAGGGTGAGGTGAATTGTCTGGCTTTCAACCCCTTCAATGAATGGGTTGTTGCAACTGGTTCAACTGACAAGACCGTGAAACTATTTGATCTTCGGAAGATTGATGCTTCCCTACACACCTTTGATTGCCACAAGGAGGAAGTATTTCAAGTTGGATGGAGCCCAAAGAATGAGACTATACTTGCATCTTGTTGTCTTGGCAGAAGGTTAATGGTCTGGGATTTAAGCAGGATTGACCAGGAACAGACACCGGAGGATGCGGAAGATGGTCCTCCGGAGCTCCTGTTCATTCATGGAGGCCATACAAGCAAGATCTCCGACTTCTCCTGGAACCCGTGCGAGGACTGGGTGATTGCTAGCGTCGCTGAGGACAACATCCTTCAGATATGGCAAATGGCAGAGAACATCTACCATGACGAGGATGATGTGCCGACTGATGACCCGGCCAAGGCTCCCTGAAAACCTCCGGTAGGAAAACCAAAAATGAACAAAATAAAACCTTAACTGTGTGACTTTAGGTACCCTCCTTTGTTGTAAGTTGTTGGCCTGGTTGGCAGTTTACAAACAGAATGTCAGTCGTAATACATTCCAGTTGCAAAAAAAAGGGAAA] [+] EMBL AK059114 [TTTTTTTCGCAGTCTCTTCATCCGTCTCGCATCCATTCCCCCGCCTCCCGCCATTTCAACCCGCCCCCAATTCCAAAACCCTCGCCTCCTCCAACAACGCGCCCCCAAACCCTAACCCTAGGAGAGGGCGCGGCGGCGGCGGCGGCGGGGGGCGAGATGCCGAAGGCTACGGCGGCGGAGGAGGAGGAGTTCCGGGCGGAGGTGGAGGAGCGGCTGATCAACGAGGAGTACAAGATCTGGAAGAAGAACACCCCGTTCCTGTACGACCTCGTCATCACCCATGCCCTGGAGTGGCCGTCCCTCACCGTGCAGTGGCTCCCCGACCGCGCTGAGCCCGCTGGGAAGGACCACTCCGTCCAGAAGATGGTGCTCGGCACCCACACCTCCGACAACGAGCCCAACTACCTCATGCTCGCCCAGGTCCAGCTCCCCCTCGACGACGCCGAGGCCGACGCGCGCCACTACGACGACGACCACGCCGAGATCGGGGGCTTCGGCGCCGCCTCCGGCAAGGTGCAAATAGTTCAACAGATAAATCATGATGGAGAGGTTAATCGAGCTCGGTATATGCCCCAGAATTCATTTATAATTGCTACCAAGACAGTCAGTGCAGAAGTATATGTCTTTGATTATAGCAAGCACCCATCAAAGCCTCCATTGGATGGTGCATGCAATCCTGACTTACGGCTGAAGGGACATAACTCTGAAGGATATGGACTGTCTTGGAGTATATTTAAGGAGGGCCATTTGTTGAGTGGATCTGATGATGCTCAAATTTGCTTATGGGACATCAAAGCAAATAGTAAAAACAAAACCCTTGACGCTCTTCAGATTTTTAAGTATCATGATGGTGTCGTTGAAGATGTTGCCTGGCATTTGAGGCATGAATACTTGTTTGGCTCAGTTGGTGATGATCACAATTTGCTAATTTGGGATTTACGTTCTCCTGTGTCTACTAAGCCTGTACAGTCTGTGGCGGCACACCAGGGTGAGGTGAATTGTCTGGCTTTCAACCCCTTCAATGAATGGGTTGTTGCAACTGGTTCAACTGACAAGACCGTGAAACTATTTGATCTTCGGAAGATTGATGCTTCCCTACACACCTTTGATTGCCACAAGGAGGAAGTATTTCAAGTTGGATGGAGCCCAAAGAATGAGACTATACTTGCATCTTGTTGTCTTGGCAGAAGGTTAATGGTCTGGGATTTAAGCAGGATTGACCAGGAACAGACACCGGAGGATGCGGAAGATGGTCCTCCGGAGCTCCTGTTCATTCATGGAGGCCATACAAGCAAGATCTCCGACTTCTCCTGGAACCCGTGCGAGGACTGGGTGATTGCTAGCGTCGCTGAGGACAACATCCTTCAGATATGGCAAATGGCAGAGAACATCTACCATGACGAGGATGATGTGCCGACTGATGACCCGGCCAAGGCTCCCTGAAAACCTCCGGTAGGAAAACCAAAAATGAACAAAATAAAACCTTAACTGTGTGACTTTAGGTACCCTCCTTTGTTGTAAGTTGTTGGCCTGGTTGGCAGTTTACAAACAGAATGTCAGTCGTAATACAT ] [+] EMBL CB655981 [ AGGACCAATCCGTCCAGAAGATGGTGCTCGGCACCCACACCTCCGACAAGGAGCCCAACTACCTCATGCTCGCCCAGGACCAGCTCCCCCTCGACGACGCCGAGGCCGACGCGCGCCACTACGACGACGACCACGCCGAGATCGGGGGCTTCGGCGCCGCCTCCGGCAAGGGGCGAATAGCTCAACAGATAAATCATGATGGAGAGGCTAATCCAGCTCGGTATATGCCCCAGAATTCATTTATAATTGCTACCAAGACAGTCAGTGCAGAAGTATATGGCTTTGATTATAGCAAGCACCCATCAAAGCCTCCATTGGATGGTGCATGCAATCCTGACTTACGGCTGAAGGGACATAACTCTGAAGGATATGGACTGTCTTGGAGTATATTTAAGGAGGGCCATTTGTTGAGTGGATCTGATGATGCTCAAATTTGCTTATGGGACATCAAAGCAAATAGTAAAAACAAAACCCTTGACGCTCTTCAGATTTTTAAGTATCATGATGGTGTCGTTGAAGATGTTGCCTGGCATTTGAGGCATGAATACTTGTTTGGCTCACTTGGTGATGATCACAATTTGCTAATTTGGGATTTACGTTCTCCTGTGTCTACTAAGCCTGTACAGTCTGTGGCGGCACACCAGGGTGAGGTGAATTGTCTGGCTTTCAACCCCTTCAATGAATGGG ] [-] EMBL CA882903 [ GCGGCACACCAGGGTGAGGTGAATTGTCTGGCTTTCAACCCCTTCAATGAATGGGTTGTTGCAACTGGTTCAACTGACAAGACCGTGAAACTATTTGATCTTCGGAAGATTGATACTTCCCTACACACCTTTGATTGCCACAAGGAGGAAGTATTTCAAGTTGGATGGAGCCCAAAGAATGAGACTATACTTGCATCTTGTTGTCTTGGCAGAAGGTTAATGGTCTGGGATTTAAGCAGGATTGACCAGGAACAGACACCGGAGGATGCGGAAGATGGTCCTCCGGAGCTCCTGTTCATTCATGGAGGCCATACAAGCAAGATCTCCGACTTCTCCTGGAACCCGTGCGAGGACTGGGTGATTGCTAGCGTCGCTGAGGACAACATCCTTCAGATATGGCAAATGGCAGAGAACATCTACCATGACGAGGATGATGTGCCGACTGATGACCCGGCCAAGGCTCCCTGAAAACCTCCGGTAGGAAAACCAAAAATGAACAAAATAAAACCTTAACTGTGTGACTTTA ] [-] EMBL CB655982 [ GATTGCCACAAGGAGGAAGTATTTCAAGTTGGATGGAGCCCAAAGAATGAGACTATACTTGCATCTTGTTGTCTTGGCAGAAGGTTAATGGTGTGGGATTTAAGCAGGATTGACCAGGAACAGACACCGGAGGATGCGGAAGATGGTCCTCCGGAGCTCCTGTTCATTCATGGAGGCCATACAAGCAAGATCTCCGACTTCTCCTGGAACCCGTGCGAGGAATGGGTGATTGTTAGCGTCGCTGAGGACAACATCCTTCAGATATGGCAAATGGCAGAGAACATCTACCATGACGAGGATGATGTGCCGACTGATGACCCGGCCAAGGCTCCTTGAAAACCTCCGGTAGGAAAACCAAAAATGAACAAAATAAAACCTTAACTGTGTGACTTTAGGTACCCTCCTTTGTTGTAAGTTGTTGGCCTGGTTGGCAGTTTACAAAAGGAATGTCAGTCGTAATACATTCCAGTTGCAAAAAAAAGGGAAA] consensusID : consensus_7749#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence [TTTGATTGCCACAAGGAGGAAGCATTTCAAGTTGGATGGAGCCCAAAGAATGAGACTATACTTGCATCTTGTTGTCTTGGCAGAAGGTTAACTGGTCTGGGATTTAAGCAAGGTTTTTCCCAGTAACAGTCACCGGAGTACTGCGGAAGATGGTCCTCCGGAGCTCCTGTCCATTCATGGAGGCCATACAAGCAAGATCTCCGACTTCTCCTGGAACCCGTGCGAGGCCTTGTTGATTGCTAGCTTCGCTGAGGACAACATCCTTCAGATATGGCAATTGGCAAGAGAACATTTCCCATGTTGTAGGTTGATGTGC] [+] EMBL OSEN20522 [TTTGATTGCCACAAGGAGGAAGCATTTCAAGTTGGATGGAGCCCAAAGAATGAGACTATACTTGCATCTTGTTGTCTTGGCAGAAGGTTAACTGGTCTGGGATTTAAGCAAGGTTTTTCCCAGTAACAGTCACCGGAGTACTGCGGAAGATGGTCCTCCGGAGCTCCTGTCCATTCATGGAGGCCATACAAGCAAGATCTCCGACTTCTCCTGGAACCCGTGCGAGGCCTTGTTGATTGCTAGCTTCGCTGAGGACAACATCCTTCAGATATGGCAATTGGCAAGAGAACATTTCCCATGTTGTAGGTTGATGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7749#0 TTTTTTTCGCAGTCTCTTCATCCGTCTCGCATCCATTCCCCCGCCTCCCGCCATTTCAAC 60 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 CCGCCCCCAATTCCAAAACCCTCGCCTCCTCCAACAACGCGCCCCCAAACCCTAACCCTA 120 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 GGAGAGGGCGCGGCGGCGGCGGCGGCGGGGGGCGAGATGCCGAAGGCTACGGCGGCGGAG 180 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 GAGGAGGAGTTCCGGGCGGAGGTGGAGGAGCGGCTGATCAACGAGGAGTACAAGATCTGG 240 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 AAGAAGAACACCCCGTTCCTGTACGACCTCGTCATCACCCATGCCCTGGAGTGGCCGTCC 300 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 CTCACCGTGCAGTGGCTCCCCGACCGCGCTGAGCCCGCTGGGAAGGACCACTCCGTCCAG 360 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 AAGATGGTGCTCGGCACCCACACCTCCGACAACGAGCCCAACTACCTCATGCTCGCCCAG 420 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 GTCCAGCTCCCCCTCGACGACGCCGAGGCCGACGCGCGCCACTACGACGACGACCACGCC 480 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 GAGATCGGGGGCTTCGGCGCCGCCTCCGGCAAGGTGCAAATAGTTCAACAGATAAATCAT 540 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 GATGGAGAGGTTAATCGAGCTCGGTATATGCCCCAGAATTCATTTATAATTGCTACCAAG 600 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 ACAGTCAGTGCAGAAGTATATGTCTTTGATTATAGCAAGCACCCATCAAAGCCTCCATTG 660 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 GATGGTGCATGCAATCCTGACTTACGGCTGAAGGGACATAACTCTGAAGGATATGGACTG 720 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 TCTTGGAGTATATTTAAGGAGGGCCATTTGTTGAGTGGATCTGATGATGCTCAAATTTGC 780 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 TTATGGGACATCAAAGCAAATAGTAAAAACAAAACCCTTGACGCTCTTCAGATTTTTAAG 840 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 TATCATGATGGTGTCGTTGAAGATGTTGCCTGGCATTTGAGGCATGAATACTTGTTTGGC 900 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 TCAGTTGGTGATGATCACAATTTGCTAATTTGGGATTTACGTTCTCCTGTGTCTACTAAG 960 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 CCTGTACAGTCTGTGGCGGCACACCAGGGTGAGGTGAATTGTCTGGCTTTCAACCCCTTC 1020 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 AATGAATGGGTTGTTGCAACTGGTTCAACTGACAAGACCGTGAAACTATTTGATCTTCGG 1080 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 AAGATTGATGCTTCCCTACACACCTTTGATTGCCACAAGGAGGAAGTATTTCAAGTTGGA 1140 consensus_7749#1 ------------------------TTTGATTGCCACAAGGAGGAAGCATTTCAAGTTGGA 36 ********************** ************* consensus_7749#0 TGGAGCCCAAAGAATGAGACTATACTTGCATCTTGTTGTCTTGGCAGAAGGTTAA-TGGT 1199 consensus_7749#1 TGGAGCCCAAAGAATGAGACTATACTTGCATCTTGTTGTCTTGGCAGAAGGTTAACTGGT 96 ******************************************************* **** consensus_7749#0 CTGGGATTTAAGCAGGATTGA--CCAGGAACAGACACCGGAGGA-TGCGGAAGATGGTCC 1256 consensus_7749#1 CTGGGATTTAAGCAAGGTTTTTCCCAGTAACAGTCACCGGAGTACTGCGGAAGATGGTCC 156 ************** * ** **** ***** ******** * *************** consensus_7749#0 TCCGGAGCTCCTGTTCATTCATGGAGGCCATACAAGCAAGATCTCCGACTTCTCCTGGAA 1316 consensus_7749#1 TCCGGAGCTCCTGTCCATTCATGGAGGCCATACAAGCAAGATCTCCGACTTCTCCTGGAA 216 ************** ********************************************* consensus_7749#0 CCCGTGCGAGGACTGGGTGATTGCTAGCGTCGCTGAGGACAACATCCTTCAGATATGGCA 1376 consensus_7749#1 CCCGTGCGAGGCCTTGTTGATTGCTAGCTTCGCTGAGGACAACATCCTTCAGATATGGCA 276 *********** ** * *********** ******************************* consensus_7749#0 AATGGCA-GAGAACATCTACCATGACG-AGGATGATGTGCCGACTGATGACCCGGCCAAG 1434 consensus_7749#1 ATTGGCAAGAGAACATTTCCCATGTTGTAGGTTGATGTGC-------------------- 316 * ***** ******** * ***** * *** ******** consensus_7749#0 GCTCCCTGAAAACCTCCGGTAGGAAAACCAAAAATGAACAAAATAAAACCTTAACTGTGT 1494 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 GACTTTAGGTACCCTCCTTTGTTGTAAGTTGTTGGCCTGGTTGGCAGTTTACAAACAGAA 1554 consensus_7749#1 ------------------------------------------------------------ consensus_7749#0 TGTCAGTCGTAATACATTCCAGTTGCAAAAAAAAGGGAAA 1594 consensus_7749#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||