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Oryza sativa
cluster # 7753 cluster # 7753       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7753#0 length = 1159 sequences # 5  

consensusID : consensus_7753#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1159
fasta sequence
                              [TTGCAGGGGCAAATCTGGAAATAAAACTAAAGAAGGAATTTGATGCTGAAACAGAATCTAAAAAAGAAGCATATGAAAAGGCACATCCTAAGAAGGACGAGCAGAATGAAGGCTATCCTAAAGGCCTAATTGTGGCCTTCAAATTGAAGAGAATCACGGTTGATGGTGGGGTGCAACAAAACTGTGCAGACAATGATACTGCCACTGAAGAAGAAACTCCAAAGTCCATGAAGAAAACATCAACTGGGGAATCTGAAGAGAGGACTACCGTGAACAGTGATATGGAGGAACAGAAGTCATCAGACGACATGACTGAAGCGAAAGAAGTGAATGCTGGGGAAGCTACAGAATCTGGTGACAAGTGCACAGTTGATGCCTTGCTAGAAAGTGAAAAGAAGGGTGATAATGAAACATCGATCAAAGATGACAGAGGCCTCTCTGGCAAAGCGAATAGTCCAATCTCAAGGGAAGATCTAAAAGAAGCGTTCAAAAAATTTGGAACAGTTCGGTATGTGGACTTCAGTATCGGGGATGAATCGGGATACCTTCGTTTCGAGGATTCTAAGGCAGCTGAAAAAGCCCGCATGTCTGCTGTATTAGCTGATGAAGGTGGCTTGATAGTTAAAGACCACATTGTTACCTTGGAGCCTGTGACTGGTGAAGCTGAGAAGGATTATTGGAATACAATACGTGGCATTCAAGGGAAATACAAGGACAATAGGAGTTACAAAGGAAGGACTGGAAAGAGCTACAGAGGAGGAAAGCAGTTCAATGGGAAGCGAGGCCGACATTCTGATTCCTCCGAAAAGGGTGCGAATAAAACACAGAAGGTCGAAGCTGCTGCTTAGGCTAATTTTAACGTCTTCACTCGACCGAGAAGTAACATGCTACGCTTACTATCGGTGGTCTTGTATATTTATTATATCAGAGACCATTTATTACCATATTTTGTGACTGTTATTGTCCATTTTTTATGCTAACCTTGTTCCAAGGTATACTTCCGTAATGATTAGCCTTTAGTAACGGCTTTGCCGTTTACTTTTGAATGGCTTTGGAGGAAAAAAAAAGGTATAGCTCCAAACATGCAAACCCGGAGCTGTTTCCTGCAGCGGAGCAGAGCAGCTGTCCTGACAATCTTCAGATATCTTCACCGTCCTGG]

[+] EMBL AK102477             [TTGCAGGGGCAAATCTGGAAATAAAACTAAAGAAGGAATTTGATGCTGAAACAGAATCTAAAAAAGAAGCATATGAAAAGGCACATCCTAAGAAGGACGAGCAGAATGAAGGCTATCCTAAAGGCCTAATTGTGGCCTTCAAATTGAAGAGAATCACGGTTGATGGTGGGGTGCAACAAAACTGTGCAGACAATGATACTGCCACTGAAGAAGAAACTCCAAAGTCCATGAAGAAAACATCAACTGGGGAATCTGAAGAGAGGACTACCGTGAACAGTGATATGGAGGAACAGAAGTCATCAGACGACATGACTGAAGCGAAAGAAGTGAATGCTGGGGAAGCTACAGAATCTGGTGACAAGTGCACAGTTGATGCCTTGCTAGAAAGTGAAAAGAAGGGTGATAATGAAACATCGATCAAAGATGACAGAGGCCTCTCTGGCAAAGCGAATAGTCCAATCTCAAGGGAAGATCTAAAAGAAGCGTTCAAAAAATTTGGAACAGTTCGGTATGTGGACTTCAGTATCGGGGATGAATCGGGATACCTTCGTTTCGAGGATTCTAAGGCAGCTGAAAAAGCCCGCATGTCTGCTGTATTAGCTGATGAAGGTGGCTTGATAGTTAAAGACCACATTGTTACCTTGGAGCCTGTGACTGGTGAAGCTGAGAAGGATTATTGGAATACAATACGTGGCATTCAAGGGAAATACAAGGACAATAGGAGTTACAAAGGAAGGACTGGAAAGAGCTACAGAGGAGGAAAGCAGTTCAATGGGAAGCGAGGCCGACATTCTGATTCCTCCGAAAAGGGTGCGAATAAAACACAGAAGGTCGAAGCTGCTGCTTAGGCTAATTTTAACGTCTTCACTCGACCGAGAAGTAACATGCTACGCTTACTATCGGTGGTCTTGTATATTTATTATATCAGAGACCATTTATTACCATATTTTGTGACTGTTATTGTCCATTTTTTATGCTAACCTTGTTCCAAGGTATACTTCCGTAATGATTAGCCTTTAGTAACGGCTTTGCCGTTTACTTTTGAATG                                                                                                               ]
[+] EMBL CB621722             [TTGCAGGGGCAAATCTGGAAATAAAACTAAAGAAGGAATTTGATGCTGAAACAGAATCTAAAAAAGAAGCATATGAAAAGGCACATCCTAAGAAGGACGAGCAGAATGAAGGCTATCCTANAGGCCTAATTGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB621723             [                                                                                                                                                                                                                                                     GGGGAATCTGAAGAGAGGACTACCGTGAACAGTGATATGGAGGAACAGAAGTCATCAGACGACATGACTGAAGCGAAAGAAGTGAACGCTGGGGAAGCTACAGAATCTGGTGACAAGTGCACAGTTGATGCCTTGCTAGAAAGTGAAAAGAAGGGTGATAATGAAACATCGATCAAAGATGACAGAGGCCTCTCTGGCAAAGCGAATAGTCCAATCTCAAGGGAAGATCTAAAAGAAGCGTTCAAAAAATTTGGAACAGTTCGGTATGTGGACTTCAGTATCGGGGATGAATCGGGATACCTTCGTTTCGAGGATTCTAAGGCAGCTGAAAAAGCCCGCATGTCTGCTGTATTAGCTGATGAAGGTGGCTTGATAGTTAAAGACCACATTGTTACCTTGGAGCTTGTGACTGGTGAAGCTGAGAAGGATTATTGGAATACAATACGTGGCATTCAAGGGAAATACAAGGACAATAGGAGTTACAAAGGAAGGACTGGAAAGAGCTACAGAGGAGGAAAGCAGTTCAATGGGAAGCGAGGCCGACATTTTGATTCCTCCGAAAAGGGTGCGAATAAAACACAGAAGGTCGAAGCTGCTGCTTAGGCTAATTTTAACGTCTTCACTCGACCGAGAAGTAACATGCTACGCTTACTATCGGTGGTCTTGTATATTTATTATATCAGAGACCATTTATTACCATATTTTGTGACTGTTATTGTCCATTTTTTATGCTAACCTTGTTCCAAGGTATACTTCCGTAATGATTAGCCTTTAGTAACGGGTTTGCCGTTTACTTTTGAATGGCTTTGGAGGAAAAAAAAAG                                                                                           ]
[+] EMBL C99167               [                                                                                                                                                                                                                                                                                                       GTCATCAGACGACATGACTGAAGCGAAAGAAGTGAATGCTGGGGAAGCTACAGAATCTGGTGACAAGTGCACAGTTGATGCCTTGCTAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB632933             [                                                                                                                                                                                                                                                                                                                                                                             ACAGTTGATGCCTTGCTAGAAAGTGAAAAGAAGGGTGATAATGAAACATCGATCAAAGATGACAGAGGCCTCTCTGGCAAAGCGAATAGTCCAATCTCAAGGGAAGATCTAAAAGAAGCGTTCAAAAAATTTGGAACAGTTCGGTATGTGGACTTCAGTATCGGGGATGAATCGGGATACCTTCGTTTCGAGGATTCTAAGGCAGCTGAAAAAGCCCGCATGTCTGCTGTATTAGCTGATGAAGGTGGCTTGATAGTTAAAGACCACATTGTTACCTTGGAGCCTGTGACTGGTGAAGCTGAGAAGGATTATTGGAATACAATACGTGGCATTCAAGGGAAATACAAGGACAATAGGAGTTACAAAGGAAGGACTGGAAAGAGCTACAGAGGAGGAAAGCAGTTCAATGGGAAGCGAGGCCGACATTCTGATTCCTCCGAAAAGGGTGCGAATAAAACACAGAAGGTCGAAGCTGCTGCTTAGGCTAATTTTAACGTCTTCACTCGACCGAGAAGTAACATGCTACGCTTACTATCGGTGGTCTTGTATATTTATTATATCAGAGACCATTTATTACCATATTTTGTGACTGTTATTGTCCATTTTTTATGCTAACCTTGTTCCAAGGTATACTTCCGTAATGATTAGCCTTTAGTAACGGCTTTGCCGTTTACTTTTGAATGGCTTTGGAGGATATAACCTTGTATAGCTCCAAACATGCAAACCCGGAGCTGTTTCCTGCAGCGGAGCAGAGCAGCTGTCCTGACAATCTTCAGATATCTTCACCGTCCTGG]


>consensus_7753#0 TTGCAGGGGCAAATCTGGAAATAAAACTAAAGAAGGAATTTGATGCTGAAACAGAATCTA AAAAAGAAGCATATGAAAAGGCACATCCTAAGAAGGACGAGCAGAATGAAGGCTATCCTA AAGGCCTAATTGTGGCCTTCAAATTGAAGAGAATCACGGTTGATGGTGGGGTGCAACAAA ACTGTGCAGACAATGATACTGCCACTGAAGAAGAAACTCCAAAGTCCATGAAGAAAACAT CAACTGGGGAATCTGAAGAGAGGACTACCGTGAACAGTGATATGGAGGAACAGAAGTCAT CAGACGACATGACTGAAGCGAAAGAAGTGAATGCTGGGGAAGCTACAGAATCTGGTGACA AGTGCACAGTTGATGCCTTGCTAGAAAGTGAAAAGAAGGGTGATAATGAAACATCGATCA AAGATGACAGAGGCCTCTCTGGCAAAGCGAATAGTCCAATCTCAAGGGAAGATCTAAAAG AAGCGTTCAAAAAATTTGGAACAGTTCGGTATGTGGACTTCAGTATCGGGGATGAATCGG GATACCTTCGTTTCGAGGATTCTAAGGCAGCTGAAAAAGCCCGCATGTCTGCTGTATTAG CTGATGAAGGTGGCTTGATAGTTAAAGACCACATTGTTACCTTGGAGCCTGTGACTGGTG AAGCTGAGAAGGATTATTGGAATACAATACGTGGCATTCAAGGGAAATACAAGGACAATA GGAGTTACAAAGGAAGGACTGGAAAGAGCTACAGAGGAGGAAAGCAGTTCAATGGGAAGC GAGGCCGACATTCTGATTCCTCCGAAAAGGGTGCGAATAAAACACAGAAGGTCGAAGCTG CTGCTTAGGCTAATTTTAACGTCTTCACTCGACCGAGAAGTAACATGCTACGCTTACTAT CGGTGGTCTTGTATATTTATTATATCAGAGACCATTTATTACCATATTTTGTGACTGTTA TTGTCCATTTTTTATGCTAACCTTGTTCCAAGGTATACTTCCGTAATGATTAGCCTTTAG TAACGGCTTTGCCGTTTACTTTTGAATGGCTTTGGAGGAAAAAAAAAGGTATAGCTCCAA ACATGCAAACCCGGAGCTGTTTCCTGCAGCGGAGCAGAGCAGCTGTCCTGACAATCTTCA GATATCTTCACCGTCCTGG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)