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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7757#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1442 fasta sequence
[GCAACACTTGCACTGCAACCAGAAGCCAGCCACTACTCAGTAGGAGATTGGAGCTGAGAGCAGCAGCAGCAGCAGCAGCTAGGAAGATGAAGAGCCTGCAAGGTGAGGTCCACCTGAACATCCCTGCATCCAAGGCATGGGAGATGTTCACCAACAATGAGACCCTGGGCAAGATCAGCCCCGAAATGCTGTCGGGCGCCGAGTACCTTGAAGGAGATGGCAGCCCTGGCAGCCTCAGGATCTTCAAGCTAGGACCTGCACTTCATCACTTTGTCAAGGAATCTGTTCAGAAGGTTGAGAAGGTCGAGACAGGCCGGTCCTTCGGCTATGAAGTGGTCAGCGGTGAGCTGAAGGAGGTCTATGATCCCTACCATGTCACCTTCTCCTTCGCCCCCGTCCCGGGGAAGGAAGGCGAGCAGTGCGTCGCTGGGTGGAAGGCTGAGTTTGAGCCCATCACCCCCACTTCCCCGCCACCAGAGAAGGCCAAGGATGCCGCCCTCGGGTTTCTTAAATTGTTTGAGACTTGCGAAGCCACTAACTAGTAAAATGACAAAAGCTGTTGTCATCTTAATGAAGATAAGTATGAAGAAACCTATGGGTAGGACAGCGTATAGAGTACTAGGCTTGACATGTGTAATACCTGCCTAGTACCTTTCTGGAAGTGTGCTATGCCAAGTGCTATGTAATGTAATAACCCTGTACTAATTACTCTAGACCCAAAAAGGAGTCCATATAAGCTTCTTGTATATGTATGGCTGAAAATGAGATAATGTGTGTGAAGATTCTAGAAAAACAATCACAAATATCTTCATGGTATCAGAGCTTGGTCGCCAGCGACTGCGCCAAGGCTAAACCCTAGCTAGCGGTGGCTGTGGCTGGAGAAGCAGGGCGCACCGGCGGTGTATTGGCGTGTGGTGCTGGAGCTCCCGGCGAGGAAGCGAGCGTGTTGACGGTGGAGGTAGCGGTGGCTGCTGTGGTTGTGCTTGGAGGATTCCGACGTGGAGAGAAGAAGGTTTGGCTAGCAGGGAGCGCCAACGGAGACCGCGTGCACGGAGGGCAAGTTGGCGACGGCGTGTGGAGAGAAGAAGGTGCTGTTGCTTGCTGCCGTGTGAAGGTGCTGCTTGAGAAGGTGCAGCTGCTGCTTGCTGCTTGAGAAAGTGCTGCGGCTGCTGCTCGAGAAGGTGAGGATTTTCTGCTGCTGCTGCTGCTGAGAAGGTGAGGATTTGGTCAGATTGAGGTCTCACAGCAAGAAAAGAAGGGGAAGAGATTAACTTGTGGAGGCAAGAAGAAGGGATATAGCTGCTATTAACTTGCTGTAATAGGGAAAACCAAGGGATTGAATAGGTGATGGGTAAATTGGTAGATATGCTTGCTAAGAAATTTAGCGAGACATCTAATACCAGCCATGCGATTGTTTCTCATGTTGAATCAGTAAAACAATT]
[+] EMBL AK103189 [GCAACACTTGCACTGCAACCAGAAGCCAGCCACTACTCAGTAGGAGATTGGAGCTGAGAGCAGCAGCAGCAGCAGCAGCTAGGAAGATGAAGAGCCTGCAAGGTGAGGTCCACCTGAACATCCCTGCATCCAAGGCATGGGAGATGTTCACCAACAATGAGACCCTGGGCAAGATCAGCCCCGAAATGCTGTCGGGCGCCGAGTACCTTGAAGGAGATGGCAGCCCTGGCAGCCTCAGGATCTTCAAGCTAGGACCTGCACTTCATCACTTTGTCAAGGAATCTGTTCAGAAGGTTGAGAAGGTCGAGACAGGCCGGTCCTTCGGCTATGAAGTGGTCAGCGGTGAGCTGAAGGAGGTCTATGATCCCTACCATGTCACCTTCTCCTTCGCCCCCGTCCCGGGGAAGGAAGGCGAGCAGTGCGTCGCTGGGTGGAAGGCTGAGTTTGAGCCCATCACCCCCACTTCCCCGCCACCAGAGAAGGCCAAGGATGCCGCCCTCGGGTTTCTTAAATTGTTTGAGACTTGCGAAGCCACTAACTAGTAAAATGACAAAAGCTGTTGTCATCTTAATGAAGATAAGTATGAAGAAACCTATGGGTAGGACAGCGTATAGAGTACTAGGCTTGACATGTGTAATACCTGCCTAGTACCTTTCTGGAAGTGTGCTATGCCAAGTGCTATGTAATGTAATAACCCTGTACTAATTACTCTAGACCCAAAAAGGAGTCCATATAAGCTTCTTGTATATGTATGGCTGAAAATGAGATAATGTGTG ]
[+] EMBL CF305512 [ GTGTAATACCTGCCTAGTACCTTTCTGGAAGTGTGCTATGCCAAGTGCTATGTAATGTAATAACCCTGTACTAATTACTCTAGACCCAAAAAGGAGTCCATATATGCTTCTTGTATATGTATGGCTGAAAATGAGATAATGTGTGTGAAGATTCTAGAAAAACAATCACAAATATCTTCATGGTATCAGAGCTTGGTCGCCAGCGACTGCGCCAAGGCTAAACCCTAGCTAGCGGTGGCTGTGGCTGGAGAAGCAGGGCGCACCGGCGGTGTATTGGCGTGTGGTGCTGGAGCTCCCGGCGAGGAAGCGAGCGTGTTGACGGTGGAGGTAGCGGTGGCTGCTGTGGTTGTGCTTGGAGGATTCCGACGTGGAGAGAAGAAGGTTTGGCTAGCAGGGAGCGCCAACGGAGACCGCGTGCACGGAGGGCAAGTTGGCGACG ]
[+] EMBL AK062939 [ GTGTGAAGATTCTAGAAAAACAATCACAAATATCTTCATGGTATCAGAGCTTGGTCGCCAGCGACTGCGCCAAGGCTAAACCCTAGCTAGCGGTGGCTGTGGCTGGAGAAGCAGGGCGCACCGGCGGTGTATTGGCGTGTGGTGCTGGAGCTCCCGGCGAGGAAGCGAGCGTGTTGACGGTGGAGGTAGCGGTGGCTGCTGTGGTTGTGCTTGGAGGATTCCGACGTGGAGAGAAGAAGGTTTGGCTAGCAGGGAGCGCCAACGGAGACCGCGTGCACGGAGGGCAAGTTGGCGACGGCGTGTGGAGAGAAGAAGGTGCTGTTGCTTGCTGCCGTGTGAAGGTGCTGCTTGAGAAGGTGCAGCTGCTGCTTGCTGCTTGAGAAAGTGCTGCGGCTGCTGCTCGAGAAGGTGAGGATTTTCTGCTGCTGCTGCTGCTGAGAAGGTGAGGATTTGGTCAGATTGAGGTCTCACAGCAAGAAAAGAAGGGGAAGAGATTAACTTGTGGAGGCAAGAAGAAGGGATATAGCTGCTATTAACTTGCTGTAATAGGGAAAACCAAGGGATTGAATAGGTGATGGGTAAATTGGTAGATATGCTTGCTAAGAAATTTAGCGAGACATCTAATACCAGCCATGCGATTGTTTCTCATGTTGAATCAGTAAAACAATT]
consensusID : consensus_7757#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 781 fasta sequence
[AAGCCAGCCACTACTCAGTAGGAGATTGGAGCTGAGAGCAGCAGCAGCAGCAGCAGCTAGGAAGATGAAGAGCCTGCAAGGTGAGGTCCACCTGAACATCCCTGCATCCAAGGCATGGGAGATGTTCACCAACAATGAGACCCTGGGCAAGATCAGCCCCGAAATGCTGTCGGGCGCCGAGTACCTTGAAGGAGATGGCAGCCCTGGCAGCCTCAGGATCTTCAAGCTAGGACCTGCACTTCATCACTTTGTCAAGGAATCTGTTCAGAAGGTTGAGAAGGTCGAGACGGGCCGGTCCTTCGGCTATGAAGTGGTCAGTGGTGAGCTGAAAGAGGTCTACGATCCCTACCATGTCACCTTCTCCTTCGCCCCTGTCCCGGAGAAGGAAGGCGAGCAGTGCGTCGCTGGGTGGAAGGCTGAGTTTGAGCCCATCACCCCCACCTTCCCGTCACCGGAGAAGGCCAAGGATGCCGCCCTCGGGTTTCTCAAATTGTTTGAGACTTGCGAGGCCGCTAACTAGTAAAATGACAAAAACTGTTGTCATCATAATGAAGATAAGTATGAAGAAACCTATGGGTAGGACAGTGTATAGAGTACTAGGGCTTGAC-TGTGTAATATCTG-CTAGTACCTATCTGGAAAGTGT-TGTGTACGCCAAGTGCTATGAAATGTAATAAGCCCGTACTATCTGAATACATATAAAAATTCTGCTTAAAAAAAAGGTTCAGTGGTATGTTAATGAATTGGTTGATTTGTAAAGCTAGACTTTCTCAATATAGAGACT]
[+] EMBL BE040547 [AAGCCAGCCACTACTCAGTAGGAGATTGGAGCTGAGAGCAGCAGCAGCAGCAGCAGCTAGGAAGATGAAGAGCCTGCAAGGTGAGGTCCACCTGAACATCCCTGCATCCAAGGCATGGGAGATGTTCACCAACAATGAGACCCTGGGCAAGATCAGCCCCGAAATGCTGTCGGGCGCCGAGTACCTTGAAGGAGATGGCAGCCCTGGCAGCCTCAGGATCTTCAAGCTAGGACCTGCACTTCATCACTTTGTCAAGGAATCTGTTCAGAAGGTTGAGAAGGTCGAGACGGGCCGGTCCTTCGGCTATGAAGTGGTCAGTGGTGAGCTGAAAGAGGTCTACGATCCCTACCATGTCACCTTCTCCTTCGCCCCTGTCCCGGAGAAGGAAGGCGAGCAGTGCGTCGCTGGGTGGAAGGCTGAGTTTGAGCCCATCACCCCCACCTTCCCGTCACCGGAGAAGGCCAAGGATGCCGCCCTCGGGTTTCTCAAATTGTTTGAGACTTGCGAGGCCGCTAACTAGTAAAATGACAAAAACTGTTGTCATCATAATGAAGATAAGTATGAAGAAACCTATGGGTAGGACAGTGTATAGAGTACTAGGGCTTGAC TGTGTAATATCTG CTAGTACCTATCTGGAAAGTGT TGTGTACGCCAAGTGCTATGAAATGTAATAAGCCCGTACTATCTGAATACATATAAAAATTCTGCTTAAAAAAAA ]
[+] EMBL BE040440 [ CATCACCGCCACCTGCCCGCCACCGGAGAAGGCCAAGGATGCCGCCCTCGGGTTTCTCAAATTGTTTGAGACTTGCGAGGCCGCTAACTAGTAAAATGACAAAAACTGTGGTCATCATAATGAAGATAAGTATGAAGAAACCTATGGGTAGGACAGTGTATAGAGTGCTA GGCTTGACTTGTGCAATATCTGCCTAGTACCTTTCTGG AAGTGTGTGT TACGCCAAGTGCTATGAAATGTAATAAGCCCGTACTATCTGAATACATATAAAATTCCTGCTTAGTCATGTGGTTCAGTGGTATGTTAATGAATTGGTTGATTTGTAAAGCTAGACTTTCTCAATATAGAGACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7757#0 GCAACACTTGCACTGCAACCAGAAGCCAGCCACTACTCAGTAGGAGATTGGAGCTGAGAG 60
consensus_7757#1 ----------------------AAGCCAGCCACTACTCAGTAGGAGATTGGAGCTGAGAG 38
**************************************
consensus_7757#0 CAGCAGCAGCAGCAGCAGCTAGGAAGATGAAGAGCCTGCAAGGTGAGGTCCACCTGAACA 120
consensus_7757#1 CAGCAGCAGCAGCAGCAGCTAGGAAGATGAAGAGCCTGCAAGGTGAGGTCCACCTGAACA 98
************************************************************
consensus_7757#0 TCCCTGCATCCAAGGCATGGGAGATGTTCACCAACAATGAGACCCTGGGCAAGATCAGCC 180
consensus_7757#1 TCCCTGCATCCAAGGCATGGGAGATGTTCACCAACAATGAGACCCTGGGCAAGATCAGCC 158
************************************************************
consensus_7757#0 CCGAAATGCTGTCGGGCGCCGAGTACCTTGAAGGAGATGGCAGCCCTGGCAGCCTCAGGA 240
consensus_7757#1 CCGAAATGCTGTCGGGCGCCGAGTACCTTGAAGGAGATGGCAGCCCTGGCAGCCTCAGGA 218
************************************************************
consensus_7757#0 TCTTCAAGCTAGGACCTGCACTTCATCACTTTGTCAAGGAATCTGTTCAGAAGGTTGAGA 300
consensus_7757#1 TCTTCAAGCTAGGACCTGCACTTCATCACTTTGTCAAGGAATCTGTTCAGAAGGTTGAGA 278
************************************************************
consensus_7757#0 AGGTCGAGACAGGCCGGTCCTTCGGCTATGAAGTGGTCAGCGGTGAGCTGAAGGAGGTCT 360
consensus_7757#1 AGGTCGAGACGGGCCGGTCCTTCGGCTATGAAGTGGTCAGTGGTGAGCTGAAAGAGGTCT 338
********** ***************************** *********** *******
consensus_7757#0 ATGATCCCTACCATGTCACCTTCTCCTTCGCCCCCGTCCCGGGGAAGGAAGGCGAGCAGT 420
consensus_7757#1 ACGATCCCTACCATGTCACCTTCTCCTTCGCCCCTGTCCCGGAGAAGGAAGGCGAGCAGT 398
* ******************************** ******* *****************
consensus_7757#0 GCGTCGCTGGGTGGAAGGCTGAGTTTGAGCCCATCACCCCCACTTCCCCGCCACCAGAGA 480
consensus_7757#1 GCGTCGCTGGGTGGAAGGCTGAGTTTGAGCCCATCACCCCCACCTTCCCGTCACCGGAGA 458
******************************************* * **** **** ****
consensus_7757#0 AGGCCAAGGATGCCGCCCTCGGGTTTCTTAAATTGTTTGAGACTTGCGAAGCCACTAACT 540
consensus_7757#1 AGGCCAAGGATGCCGCCCTCGGGTTTCTCAAATTGTTTGAGACTTGCGAGGCCGCTAACT 518
**************************** ******************** *** ******
consensus_7757#0 AGTAAAATGACAAAAGCTGTTGTCATCTTAATGAAGATAAGTATGAAGAAACCTATGGGT 600
consensus_7757#1 AGTAAAATGACAAAAACTGTTGTCATCATAATGAAGATAAGTATGAAGAAACCTATGGGT 578
*************** *********** ********************************
consensus_7757#0 AGGACAGCGTATAGAGTACTAGG-CTTGACATGTGTAATACCTGCCTAGTACCTTTCTGG 659
consensus_7757#1 AGGACAGTGTATAGAGTACTAGGGCTTGAC-TGTGTAATATCTGC-TAGTACCTATCTGG 636
******* *************** ****** ********* **** ******** *****
consensus_7757#0 AA-GTGTGCTAT--GCCAAGTGCTATGTAATGTAATAACCCTGTACTAATTACTCTAGAC 716
consensus_7757#1 AAAGTGTTGTGTACGCCAAGTGCTATGAAATGTAATAAGCCCGTACTATCTGAA-TACAT 695
** **** * * ************* ********** ** ****** * ** *
consensus_7757#0 CCAAAAAGGAGTCCATATAAGCTTCTTGTATATGTATGGCTGAAAATGAGATAATGTGTG 776
consensus_7757#1 ATAAAAATTC-TGCTTAAAAAAAAGGTTCAGTGGTATGTTAATGAATTGGTTGATTTGTA 754
***** * * ** ** * * ***** *** * * ** ***
consensus_7757#0 TGA--AGATTCTAGAAAAACAATCACAAATATCTTCATGGTATCAGAGCTTGGTCGCCAG 834
consensus_7757#1 AAGCTAGACTTTCTCAATATAGAGACT--------------------------------- 781
*** * * ** * * **
consensus_7757#0 CGACTGCGCCAAGGCTAAACCCTAGCTAGCGGTGGCTGTGGCTGGAGAAGCAGGGCGCAC 894
consensus_7757#1 ------------------------------------------------------------
consensus_7757#0 CGGCGGTGTATTGGCGTGTGGTGCTGGAGCTCCCGGCGAGGAAGCGAGCGTGTTGACGGT 954
consensus_7757#1 ------------------------------------------------------------
consensus_7757#0 GGAGGTAGCGGTGGCTGCTGTGGTTGTGCTTGGAGGATTCCGACGTGGAGAGAAGAAGGT 1014
consensus_7757#1 ------------------------------------------------------------
consensus_7757#0 TTGGCTAGCAGGGAGCGCCAACGGAGACCGCGTGCACGGAGGGCAAGTTGGCGACGGCGT 1074
consensus_7757#1 ------------------------------------------------------------
consensus_7757#0 GTGGAGAGAAGAAGGTGCTGTTGCTTGCTGCCGTGTGAAGGTGCTGCTTGAGAAGGTGCA 1134
consensus_7757#1 ------------------------------------------------------------
consensus_7757#0 GCTGCTGCTTGCTGCTTGAGAAAGTGCTGCGGCTGCTGCTCGAGAAGGTGAGGATTTTCT 1194
consensus_7757#1 ------------------------------------------------------------
consensus_7757#0 GCTGCTGCTGCTGCTGAGAAGGTGAGGATTTGGTCAGATTGAGGTCTCACAGCAAGAAAA 1254
consensus_7757#1 ------------------------------------------------------------
consensus_7757#0 GAAGGGGAAGAGATTAACTTGTGGAGGCAAGAAGAAGGGATATAGCTGCTATTAACTTGC 1314
consensus_7757#1 ------------------------------------------------------------
consensus_7757#0 TGTAATAGGGAAAACCAAGGGATTGAATAGGTGATGGGTAAATTGGTAGATATGCTTGCT 1374
consensus_7757#1 ------------------------------------------------------------
consensus_7757#0 AAGAAATTTAGCGAGACATCTAATACCAGCCATGCGATTGTTTCTCATGTTGAATCAGTA 1434
consensus_7757#1 ------------------------------------------------------------
consensus_7757#0 AAACAATT 1442
consensus_7757#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||