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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7758#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1174 fasta sequence
[GAGAGCCTTCTGTTGATCTTTCTAGGGACGCTTGGGTTCGAATGAAGCTGGGTATATATAAAGGTGACCTTGCTAAGGTTGTCGATGTTGACAATGTGCGCCAAAGGGTTACTGTGAAGCTGATCCCTAGAATAGATTTACAAGCTTTGGCTAGTAAACTGGAAGGGAGGGAGGCTGTGAAGAAGAAAGCATTTGTCCCACCACCACGTTTCTTTAATATTGATGAGGCCAGGGAGATGCACATTCGTGTGGAACGGAGGAGGGATAAAGACT-CTGGGGAGTACTTTGAGATGATTGATGGCTTAATGTTCAAAGATGGCTTCTTATACAAAACTGTCTCAATAAAATCAATCAGCACACAGAATATTCAGCCATCATTCGATGAACTGGAGAAGTTCAGAAAACCTGGTGATGACATGAATGGGGATATGTCTAGCTTGTCTACGCTTTTTGCTAATAGGAAAAAGGGGCACTTTATGAAGGGTGATGCTGTCATTGTTATCAAAGGTGATCTGAAAAATTTGGAGGGTTGGGTTGAGAAAGTAGAGGATGAGACTGTTCACATCAGACCAAAAATATCTGATCTACCGAAAACGTTAGCCTTCAATGAGAAAGAGCTTTGCAAGTATTTTAAACCCGGAGATCATGTTAAAGTGGTATCAGGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCTCTGAGATCACAACGGG-AATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGCTCTTTTGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGACGCATTTCAGGTTCTGAAAGGAGTACCGGATAGACCAGAACTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTGTCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAAATGGTATGGATACGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAAGGCTGCCCCCAAGAGGACCTCATATGAACTTTGGT]
[+] EMBL CB671673 [GAGAGCCTTCTGTTGATCTTTCTAGGGACGCTTGGGTTCGAATGAAGCTGGGTATATATAAAGGTGACCTTGCTAAGGTTGTCGATGTTGACAATGTGCGCCAAAGGGTTACTGTGAAGCTGATCCCTAGAATAGATTTACAAGCTTTGGCTAGTAAACTGGAAGGGAGGGAGGCTGTGAAGAAGAAAGCATTTGTCCCACCACCACGTTTCTTTAATATTGATGAGGCCAGGGAGATGCACATTCGTGTGGAACGGAGGAGGGATAAAGACT CTGGGGAGTACTTTGAGATGATTGATGGCTTAATGTTCAAAGATGGCTTCTTATACAAAACTGTCTCAATAAAATCAATCAGCACACAGAATATTCAGCCATCATTCGATGAACTGGAGAAGTTCAGAAAACCTGGTGATGACATGAATGGGGATATGTCTAGCTTGTCTACGCTTTTTGCTAATAGGAAAAAGGGGCACTTTATGAAGGGTGATGCTGTCATTGTTATCAAAGGTGATCTGAAAAATTTGGAGGGTTGGGTTGAGAAAGTAGAGGATGAGACTGTTCACATCAGACCAAAAATATCTGATCTACCGAAAACGTTAGCCTTCAATGAGAAAGAGCTTTGCAAGTATTTTAAACCCGGAGATCATGTTAAAGTGGTATCAGGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCTCTGAGATCACAACGGGAAATACCCAG ATTGGTGATTATGAGCTGCATGA ]
[+] EMBL CB672984 [ ACATTCGTCTGGAACGGAGGAGGGATAAAGACTCCTGGGGAGTACTTTGAGATGATTGATGGCTTAATGTTCAAAGATGGCTTCTTATACAAAACTGTCTCAATAAAATCAATCAGCACACAGAATATTCAGCCATCATTCGATGAACTGGAGAAGTTCACAAAACCTGGTGATGACATGAATGGGGATATGTCTAGCTTGTCTACGCTTTTTGCTAATAGGAAAAAGGGGCACTTTATGAAGGGTGATGCTGTCATTGATATCAAAGGTGATCTGAAAAATTTGGAGGGTTGGGTTGAGAAAGTACAGGATGAGACTGTTCACATCAGACCAAAAATATCTGATCTACCGAAAACGTTAGCCTTCAATGAGAAAGAGCTTTGCAAGTATTTTAAACCCGGAGATCATGTTAAAGTGGTATCACGTGTTCAAGAAGGTGCAACAGGCATGGATGTTAAAGTGGAAGGGCATGTCTTGATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCTCTGAGATCACAACGGG AATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGCTCTTTTGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGACGCATTTCAGGTTCTGAAAGGAGTACCGGATAGACCAGAACTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAAT ]
[+] EMBL CB668947 [ AGGATGAGCCTGTTCACATCAGACCAAAAATATCTGATCTACCGAAAACGTTAGCCTTCAATGAGAAAGAGCTTTGCAAGTATTTTAAACCCGGAGATCATGTTAAAGTGGTATCAGGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCTCTGAGATCACAACGGG AATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGTTCTTTTGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGAGGCATTTCAGGTTCTGAAAGGAGTACCGGATAGACCAGAAGTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTGTCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAAATGGTATGGATACGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAAGGCTGCCCCCAAGAGGACCTCATATGAACTTTGGT]
consensusID : consensus_7758#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 640 fasta sequence
[GTATCACGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCTCTGAGATCACAACGGGAATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGTTCTTTTGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGAGGCATTTCAGGTTCTGAAAGGAGTACCGGATAGACCAGAAGTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTGTCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAACACATACATAAGGGGATATTATTTATCTATGATAGACACCACCTCGAGCATGCAGGCTTTATTTGTGCAAAAGCACAGTCCTGTCTTCTTGTTGGTGGATCAGCTGGTGGACGTCGTGGAAATGGTATGGATACGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAAGGCTGCCCCCAAGAGGACCTCATATGAACTTTGGTG]
[+] EMBL CB676424 [GTATCACGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCTCTGAGATCACAACGGGAATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGTTCTTTTGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGAGGCATTTCAGGTTCTGAAAGGAGTACCGGATAGACCAGAAGTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTGTCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAACACATACATAAGGGGATATTATTTATCTATGATAGACACCACCTCGAGCATGCAGGCTTTATTTGTGCAAAAGCACAGTCCTGTCTTCTTGTTGGTGGATCAGCTGGTGGACGTCGTGGAAATGGTATGGATACGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAAGGCTGCCCCCAAGAGGACCTCATATGAACTTTGGT ]
[-] EMBL CA923299 [ cCCAGAAGTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTGTCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAACACATACATAAGGGGATATTATTTATCTATGATAGACACCACCTCGAGCATGCAGGCTTTATTTGTGCAGAAGCACAGTCCTGTCTTCTTGTTGGTGGATCAGCTGGTGGACGTCGTGGAAATGGTATGGATACGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAAGGCTGCCCCCAAGAGGACCTCATATGAACTTTGGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7758#0 GAGAGCCTTCTGTTGATCTTTCTAGGGACGCTTGGGTTCGAATGAAGCTGGGTATATATA 60
consensus_7758#1 ------------------------------------------------------------
consensus_7758#0 AAGGTGACCTTGCTAAGGTTGTCGATGTTGACAATGTGCGCCAAAGGGTTACTGTGAAGC 120
consensus_7758#1 ------------------------------------------------------------
consensus_7758#0 TGATCCCTAGAATAGATTTACAAGCTTTGGCTAGTAAACTGGAAGGGAGGGAGGCTGTGA 180
consensus_7758#1 ------------------------------------------------------------
consensus_7758#0 AGAAGAAAGCATTTGTCCCACCACCACGTTTCTTTAATATTGATGAGGCCAGGGAGATGC 240
consensus_7758#1 ------------------------------------------------------------
consensus_7758#0 ACATTCGTGTGGAACGGAGGAGGGATAAAGACTCTGGGGAGTACTTTGAGATGATTGATG 300
consensus_7758#1 ------------------------------------------------------------
consensus_7758#0 GCTTAATGTTCAAAGATGGCTTCTTATACAAAACTGTCTCAATAAAATCAATCAGCACAC 360
consensus_7758#1 ------------------------------------------------------------
consensus_7758#0 AGAATATTCAGCCATCATTCGATGAACTGGAGAAGTTCAGAAAACCTGGTGATGACATGA 420
consensus_7758#1 ------------------------------------------------------------
consensus_7758#0 ATGGGGATATGTCTAGCTTGTCTACGCTTTTTGCTAATAGGAAAAAGGGGCACTTTATGA 480
consensus_7758#1 ------------------------------------------------------------
consensus_7758#0 AGGGTGATGCTGTCATTGTTATCAAAGGTGATCTGAAAAATTTGGAGGGTTGGGTTGAGA 540
consensus_7758#1 ------------------------------------------------------------
consensus_7758#0 AAGTAGAGGATGAGACTGTTCACATCAGACCAAAAATATCTGATCTACCGAAAACGTTAG 600
consensus_7758#1 ------------------------------------------------------------
consensus_7758#0 CCTTCAATGAGAAAGAGCTTTGCAAGTATTTTAAACCCGGAGATCATGTTAAAGTGGTAT 660
consensus_7758#1 --------------------------------------------------------GTAT 4
****
consensus_7758#0 CAGGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAA 720
consensus_7758#1 CACGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAA 64
** *********************************************************
consensus_7758#0 TTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCT 780
consensus_7758#1 TTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCT 124
************************************************************
consensus_7758#0 CTGAGATCACAACGGGAATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGCTCTTT 840
consensus_7758#1 CTGAGATCACAACGGGAATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGTTCTTT 184
****************************************************** *****
consensus_7758#0 TGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGACGCATTTCAGGTTCTGA 900
consensus_7758#1 TGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGAGGCATTTCAGGTTCTGA 244
******************************************* ****************
consensus_7758#0 AAGGAGTACCGGATAGACCAGAACTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGA 960
consensus_7758#1 AAGGAGTACCGGATAGACCAGAAGTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGA 304
*********************** ************************************
consensus_7758#0 TTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTG 1020
consensus_7758#1 TTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTG 364
************************************************************
consensus_7758#0 TCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAA------------- 1067
consensus_7758#1 TCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAACACATACATAAGG 424
***********************************************
consensus_7758#0 ------------------------------------------------------------
consensus_7758#1 GGATATTATTTATCTATGATAGACACCACCTCGAGCATGCAGGCTTTATTTGTGCAAAAG 484
consensus_7758#0 ------------------------------------------------ATGGTATGGATA 1079
consensus_7758#1 CACAGTCCTGTCTTCTTGTTGGTGGATCAGCTGGTGGACGTCGTGGAAATGGTATGGATA 544
************
consensus_7758#0 CGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAA 1139
consensus_7758#1 CGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAA 604
************************************************************
consensus_7758#0 GGCTGCCCCCAAGAGGACCTCATATGAACTTTGGT- 1174
consensus_7758#1 GGCTGCCCCCAAGAGGACCTCATATGAACTTTGGTG 640
***********************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||