These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7758#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1174 fasta sequence [GAGAGCCTTCTGTTGATCTTTCTAGGGACGCTTGGGTTCGAATGAAGCTGGGTATATATAAAGGTGACCTTGCTAAGGTTGTCGATGTTGACAATGTGCGCCAAAGGGTTACTGTGAAGCTGATCCCTAGAATAGATTTACAAGCTTTGGCTAGTAAACTGGAAGGGAGGGAGGCTGTGAAGAAGAAAGCATTTGTCCCACCACCACGTTTCTTTAATATTGATGAGGCCAGGGAGATGCACATTCGTGTGGAACGGAGGAGGGATAAAGACT-CTGGGGAGTACTTTGAGATGATTGATGGCTTAATGTTCAAAGATGGCTTCTTATACAAAACTGTCTCAATAAAATCAATCAGCACACAGAATATTCAGCCATCATTCGATGAACTGGAGAAGTTCAGAAAACCTGGTGATGACATGAATGGGGATATGTCTAGCTTGTCTACGCTTTTTGCTAATAGGAAAAAGGGGCACTTTATGAAGGGTGATGCTGTCATTGTTATCAAAGGTGATCTGAAAAATTTGGAGGGTTGGGTTGAGAAAGTAGAGGATGAGACTGTTCACATCAGACCAAAAATATCTGATCTACCGAAAACGTTAGCCTTCAATGAGAAAGAGCTTTGCAAGTATTTTAAACCCGGAGATCATGTTAAAGTGGTATCAGGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCTCTGAGATCACAACGGG-AATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGCTCTTTTGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGACGCATTTCAGGTTCTGAAAGGAGTACCGGATAGACCAGAACTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTGTCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAAATGGTATGGATACGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAAGGCTGCCCCCAAGAGGACCTCATATGAACTTTGGT] [+] EMBL CB671673 [GAGAGCCTTCTGTTGATCTTTCTAGGGACGCTTGGGTTCGAATGAAGCTGGGTATATATAAAGGTGACCTTGCTAAGGTTGTCGATGTTGACAATGTGCGCCAAAGGGTTACTGTGAAGCTGATCCCTAGAATAGATTTACAAGCTTTGGCTAGTAAACTGGAAGGGAGGGAGGCTGTGAAGAAGAAAGCATTTGTCCCACCACCACGTTTCTTTAATATTGATGAGGCCAGGGAGATGCACATTCGTGTGGAACGGAGGAGGGATAAAGACT CTGGGGAGTACTTTGAGATGATTGATGGCTTAATGTTCAAAGATGGCTTCTTATACAAAACTGTCTCAATAAAATCAATCAGCACACAGAATATTCAGCCATCATTCGATGAACTGGAGAAGTTCAGAAAACCTGGTGATGACATGAATGGGGATATGTCTAGCTTGTCTACGCTTTTTGCTAATAGGAAAAAGGGGCACTTTATGAAGGGTGATGCTGTCATTGTTATCAAAGGTGATCTGAAAAATTTGGAGGGTTGGGTTGAGAAAGTAGAGGATGAGACTGTTCACATCAGACCAAAAATATCTGATCTACCGAAAACGTTAGCCTTCAATGAGAAAGAGCTTTGCAAGTATTTTAAACCCGGAGATCATGTTAAAGTGGTATCAGGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCTCTGAGATCACAACGGGAAATACCCAG ATTGGTGATTATGAGCTGCATGA ] [+] EMBL CB672984 [ ACATTCGTCTGGAACGGAGGAGGGATAAAGACTCCTGGGGAGTACTTTGAGATGATTGATGGCTTAATGTTCAAAGATGGCTTCTTATACAAAACTGTCTCAATAAAATCAATCAGCACACAGAATATTCAGCCATCATTCGATGAACTGGAGAAGTTCACAAAACCTGGTGATGACATGAATGGGGATATGTCTAGCTTGTCTACGCTTTTTGCTAATAGGAAAAAGGGGCACTTTATGAAGGGTGATGCTGTCATTGATATCAAAGGTGATCTGAAAAATTTGGAGGGTTGGGTTGAGAAAGTACAGGATGAGACTGTTCACATCAGACCAAAAATATCTGATCTACCGAAAACGTTAGCCTTCAATGAGAAAGAGCTTTGCAAGTATTTTAAACCCGGAGATCATGTTAAAGTGGTATCACGTGTTCAAGAAGGTGCAACAGGCATGGATGTTAAAGTGGAAGGGCATGTCTTGATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCTCTGAGATCACAACGGG AATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGCTCTTTTGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGACGCATTTCAGGTTCTGAAAGGAGTACCGGATAGACCAGAACTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAAT ] [+] EMBL CB668947 [ AGGATGAGCCTGTTCACATCAGACCAAAAATATCTGATCTACCGAAAACGTTAGCCTTCAATGAGAAAGAGCTTTGCAAGTATTTTAAACCCGGAGATCATGTTAAAGTGGTATCAGGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCTCTGAGATCACAACGGG AATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGTTCTTTTGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGAGGCATTTCAGGTTCTGAAAGGAGTACCGGATAGACCAGAAGTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTGTCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAAATGGTATGGATACGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAAGGCTGCCCCCAAGAGGACCTCATATGAACTTTGGT] consensusID : consensus_7758#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 640 fasta sequence [GTATCACGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCTCTGAGATCACAACGGGAATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGTTCTTTTGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGAGGCATTTCAGGTTCTGAAAGGAGTACCGGATAGACCAGAAGTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTGTCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAACACATACATAAGGGGATATTATTTATCTATGATAGACACCACCTCGAGCATGCAGGCTTTATTTGTGCAAAAGCACAGTCCTGTCTTCTTGTTGGTGGATCAGCTGGTGGACGTCGTGGAAATGGTATGGATACGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAAGGCTGCCCCCAAGAGGACCTCATATGAACTTTGGTG] [+] EMBL CB676424 [GTATCACGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCTCTGAGATCACAACGGGAATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGTTCTTTTGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGAGGCATTTCAGGTTCTGAAAGGAGTACCGGATAGACCAGAAGTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTGTCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAACACATACATAAGGGGATATTATTTATCTATGATAGACACCACCTCGAGCATGCAGGCTTTATTTGTGCAAAAGCACAGTCCTGTCTTCTTGTTGGTGGATCAGCTGGTGGACGTCGTGGAAATGGTATGGATACGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAAGGCTGCCCCCAAGAGGACCTCATATGAACTTTGGT ] [-] EMBL CA923299 [ cCCAGAAGTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTGTCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAACACATACATAAGGGGATATTATTTATCTATGATAGACACCACCTCGAGCATGCAGGCTTTATTTGTGCAGAAGCACAGTCCTGTCTTCTTGTTGGTGGATCAGCTGGTGGACGTCGTGGAAATGGTATGGATACGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAAGGCTGCCCCCAAGAGGACCTCATATGAACTTTGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7758#0 GAGAGCCTTCTGTTGATCTTTCTAGGGACGCTTGGGTTCGAATGAAGCTGGGTATATATA 60 consensus_7758#1 ------------------------------------------------------------ consensus_7758#0 AAGGTGACCTTGCTAAGGTTGTCGATGTTGACAATGTGCGCCAAAGGGTTACTGTGAAGC 120 consensus_7758#1 ------------------------------------------------------------ consensus_7758#0 TGATCCCTAGAATAGATTTACAAGCTTTGGCTAGTAAACTGGAAGGGAGGGAGGCTGTGA 180 consensus_7758#1 ------------------------------------------------------------ consensus_7758#0 AGAAGAAAGCATTTGTCCCACCACCACGTTTCTTTAATATTGATGAGGCCAGGGAGATGC 240 consensus_7758#1 ------------------------------------------------------------ consensus_7758#0 ACATTCGTGTGGAACGGAGGAGGGATAAAGACTCTGGGGAGTACTTTGAGATGATTGATG 300 consensus_7758#1 ------------------------------------------------------------ consensus_7758#0 GCTTAATGTTCAAAGATGGCTTCTTATACAAAACTGTCTCAATAAAATCAATCAGCACAC 360 consensus_7758#1 ------------------------------------------------------------ consensus_7758#0 AGAATATTCAGCCATCATTCGATGAACTGGAGAAGTTCAGAAAACCTGGTGATGACATGA 420 consensus_7758#1 ------------------------------------------------------------ consensus_7758#0 ATGGGGATATGTCTAGCTTGTCTACGCTTTTTGCTAATAGGAAAAAGGGGCACTTTATGA 480 consensus_7758#1 ------------------------------------------------------------ consensus_7758#0 AGGGTGATGCTGTCATTGTTATCAAAGGTGATCTGAAAAATTTGGAGGGTTGGGTTGAGA 540 consensus_7758#1 ------------------------------------------------------------ consensus_7758#0 AAGTAGAGGATGAGACTGTTCACATCAGACCAAAAATATCTGATCTACCGAAAACGTTAG 600 consensus_7758#1 ------------------------------------------------------------ consensus_7758#0 CCTTCAATGAGAAAGAGCTTTGCAAGTATTTTAAACCCGGAGATCATGTTAAAGTGGTAT 660 consensus_7758#1 --------------------------------------------------------GTAT 4 **** consensus_7758#0 CAGGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAA 720 consensus_7758#1 CACGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAA 64 ** ********************************************************* consensus_7758#0 TTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCT 780 consensus_7758#1 TTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCT 124 ************************************************************ consensus_7758#0 CTGAGATCACAACGGGAATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGCTCTTT 840 consensus_7758#1 CTGAGATCACAACGGGAATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGTTCTTT 184 ****************************************************** ***** consensus_7758#0 TGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGACGCATTTCAGGTTCTGA 900 consensus_7758#1 TGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGAGGCATTTCAGGTTCTGA 244 ******************************************* **************** consensus_7758#0 AAGGAGTACCGGATAGACCAGAACTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGA 960 consensus_7758#1 AAGGAGTACCGGATAGACCAGAAGTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGA 304 *********************** ************************************ consensus_7758#0 TTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTG 1020 consensus_7758#1 TTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTG 364 ************************************************************ consensus_7758#0 TCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAA------------- 1067 consensus_7758#1 TCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAACACATACATAAGG 424 *********************************************** consensus_7758#0 ------------------------------------------------------------ consensus_7758#1 GGATATTATTTATCTATGATAGACACCACCTCGAGCATGCAGGCTTTATTTGTGCAAAAG 484 consensus_7758#0 ------------------------------------------------ATGGTATGGATA 1079 consensus_7758#1 CACAGTCCTGTCTTCTTGTTGGTGGATCAGCTGGTGGACGTCGTGGAAATGGTATGGATA 544 ************ consensus_7758#0 CGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAA 1139 consensus_7758#1 CGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAA 604 ************************************************************ consensus_7758#0 GGCTGCCCCCAAGAGGACCTCATATGAACTTTGGT- 1174 consensus_7758#1 GGCTGCCCCCAAGAGGACCTCATATGAACTTTGGTG 640 *********************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||