These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7759#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 555 fasta sequence [CCGGTCTCCTTGGGCTTTCCCTTTGGTTCTTTTCGTCCTACCTCTTAATTTGTCATCTCGGGGGAGCAGAAATCTTTCCTGATCTTCCTCCCATGGTTGCTGCTTTCCTGCTTTGCCTTTGCTTGGTTGCTTGTGTTGTGTGCTGTGCTGTGCAGTGGCGATGACTGCTTTGCTGCTGCTGTTCTTAATTGCTGCATGCCATGTCTCACTTGGAAAGTATTTTTTTGCTTTGCTTTGTTTGTTTGTTTCAGCCAGGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCCGAGGAACAATCCAACGGGGGCAACAGAAAAGGAAATTTTCTGCTCCTGCGGTTGAGTTGGTAAAATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGATTAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACACCAACAGCACCAGCACCAGCACCAGCAGCAGCAGCTGGCATCGTCACTGACGGCGTGGCAACAGCGGCCTACTGGCGTCAAGCCAAG] [+] EMBL CA752672 [CCGGTCTCCTTGGGCTTTCCCTTTGGTTCTTTTCGTCCTACCTCTTAATTTGTCATCTCGGGGGAGCAGAAATCTTTCCTGATCTTCCTCCCATGGTTGCTGCTTTCCTGCTTTGCCTTTGCTTGGTTGCTTGTGTTGTGTGCTGTGCTGTGCAGTGGCNATGACTGCTTTGCTGCTGCTGTTCTTAATTGCTGCATGCCATGTCTCACTTGGAAAGTATTTTTTTGCTTTGCTTTGTTTGTTTGTTTCA CATGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCAGAGGAACAATCCAAC GGGGCAACAGAAAAGGAAATTTTCTGCTCCTGC GTTGAGTTGGTAAAATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCNTTCTT GGGATTAGCA GGATGGGGACCAG ATGACCAGATTAAGCCGCTGATATCACACCAACAGCACCAGCACCAGCACCAGCAGCAGCAGCTGGCATCGTCACTGACGGCGTGGCAACAGCGGCCTACTGGCGTCAAGCCAAG] [+] EMBL CB638296 [ TCTTCCTCCCATGGTTGCTGCTTTCCTGCTTTGCCTTTGCTTGGTTGCTTGTGTTGTGTGCTGTGCTGTGCAGTGGCGATGACTGCTTTGCTGCTGCTGTTCTTAATTGCTGCATGCCATGTCTCACTTGGAAAGTATTTTTTTGCTTTGCTTTGTTTGTTTGTTTCAGCCAGGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCCGAGGAACAATCCAACGGGGGCAACAGAAAAGGAAATTTTCTGCTCCTGCGGTTGAGTTGGTAAAATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGATTAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACA ] [+] EMBL CB638226 [ TCTTCCTCCC TGGTTGCTGCTTTCCTGCTTTGCCTTTGCTTGGTTGCTTGTGTTGTGTGCTGTGCTGTGCAGTGGCGATGACTGCTTTGCTGCTGCTGTTCTTAATTGCTGCATGCCATGTCTCACTTGGAAAGTATTTTTTTGCTTTGCTTTGTTTGTTTGTTTCAGCCAGGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCCGAGGAACAATCCAACGGGGGCAACAGAAAAGGAAATTTTCTGCTCCTGCGGTTGAGTTGGTAAAATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGATTAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACA ] consensusID : consensus_7759#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 409 fasta sequence [GAGTG-CGTTAGGAAAGGAGCAGGAGAAGAGAGAGAGAGAGAAAGAAAAGTATGACAAGGAAATGAAAGAAATGAGACAACAACCTTGTTAGCCTTCCTCTTCCATCCTCTCCTCTCCACTTCTTGTTCTATCTTCTTCTTGGAGAGCTAGCAGGAGGAGCAAAGCAGTAGGGGAGAGAGAAGAGAGAGTGAGCCAGGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCCGAGGAACAATCCAACGGGGGCAACAGAAAAGGAAATTTTCTGCTCCTGCGGTTGAGTTGGTAAAATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGATTAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACA] [+] EMBL CB676039 [GAGTG CGTTAGGAAAGGAGCAGGAGAAGAGAGAGAGAGAGAAAGAAAAGTATGACAAGGAAATGAAAGAAATGAGACAACAACCTTGTTAGCCTTCCTCTTCCATCCTCTCCTCTCCACTTCTTGTTCTATCTTCTTCTTGGAGAGCTAGCAGGAGGAGCAAAGCAGTAGGGGAGAGAGAAGAGAGAGTGAGCCAGGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCCGAGGAACAATCCAACGGGGGCAACAGAAAAGGAAATTTTCTGCTCCTGCGGTTGAGTTGGTAAAATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGATTAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACA] [+] EMBL CB676078 [GAGTGTCG TAGGAAAGGAGCAGGAGAAGAGAGAGAGAGAGAAAGAAAAGTATGACAAGGAAATGAAAGAAATGAGACAACAACCTTGTTAGCCTTCCTCTTCCATCCTCTCCTCTCCACTTCTTGTTCTATCTTCTTCTTGGAGAGCTAGCAGGAGGAGCAAAGCAGTAGGGGAGAGAGAAGAGAGAGTGAGCCAGGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCCGAGGAACAATCCAACGGGGGCAACAGAAAAGGAAATTTTCTGCTCCTGCGGTTGAGTTGGTAAAATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGATTAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7759#0 CCGGTCTCCTTGGGCTTTCCCTTTGGTTCTTTTCGTCCTACCTCTTAATTTGTCATCTCG 60 consensus_7759#1 ---------------------------------------------GAGTGCGTTAGG--A 13 * * ** * consensus_7759#0 GGGGAGCAGAAATCTTTCCTGATCTTCCTCCCATGGTTGCTGCTTTCCTGCTTTGCCTTT 120 consensus_7759#1 AAGGAGCAGGAGAAGAGAGAGAGAGA----GAAAGAAAAGTATGACAAGGAAATGAAAGA 69 ******* * ** * * * * ** consensus_7759#0 GCTTGGTTGCTTGTGTTGTGTGCTGTGCTGTGCAGTGGCGATGACTGCTTTGCTGCTGCT 180 consensus_7759#1 AATGAGACAACAACCTTGTTAGCCTTCCTCTTCC------ATCCTCTCCTCTCCACTTCT 123 * * **** ** * ** * * ** * * * ** ** consensus_7759#0 GTTCTTAATTGCTGCATGCCATGTCTCACTTGGAAAGTATTTTTTTGCTTTGCTTTGTTT 240 consensus_7759#1 TGTTCTATCTTCTTCTTGG-AGAGCTAGCAGGAGGAGCAAAGCAGTAGGG-GAGAGAGAA 181 * ** * ** * ** * ** * * ** * * * consensus_7759#0 GTTTGTTTCAGCCAGGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCCGAG 300 consensus_7759#1 GAGAGAGTGAGCCAGGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCCGAG 241 * * * *************************************************** consensus_7759#0 GAACAATCCAACGGGGGCAACAGAAAAGGAAATTTTCTGCTCCTGCGGTTGAGTTGGTAA 360 consensus_7759#1 GAACAATCCAACGGGGGCAACAGAAAAGGAAATTTTCTGCTCCTGCGGTTGAGTTGGTAA 301 ************************************************************ consensus_7759#0 AATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGAT 420 consensus_7759#1 AATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGAT 361 ************************************************************ consensus_7759#0 TAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACACCAACAGCACCA 480 consensus_7759#1 TAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACA------------ 409 ************************************************ consensus_7759#0 GCACCAGCACCAGCAGCAGCAGCTGGCATCGTCACTGACGGCGTGGCAACAGCGGCCTAC 540 consensus_7759#1 ------------------------------------------------------------ consensus_7759#0 TGGCGTCAAGCCAAG 555 consensus_7759#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||