cluster # 7759

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Oryza sativa
cluster # 7759 cluster # 7759 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7759#0 length = 555 sequences # 3

consensus_7759#1 length = 409 sequences # 2

consensusID : consensus_7759#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 555
fasta sequence

                              [CCGGTCTCCTTGGGCTTTCCCTTTGGTTCTTTTCGTCCTACCTCTTAATTTGTCATCTCGGGGGAGCAGAAATCTTTCCTGATCTTCCTCCCATGGTTGCTGCTTTCCTGCTTTGCCTTTGCTTGGTTGCTTGTGTTGTGTGCTGTGCTGTGCAGTGGCGATGACTGCTTTGCTGCTGCTGTTCTTAATTGCTGCATGCCATGTCTCACTTGGAAAGTATTTTTTTGCTTTGCTTTGTTTGTTTGTTTCAGCCAGGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCCGAGGAACAATCCAACGGGGGCAACAGAAAAGGAAATTTTCTGCTCCTGCGGTTGAGTTGGTAAAATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGATTAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACACCAACAGCACCAGCACCAGCACCAGCAGCAGCAGCTGGCATCGTCACTGACGGCGTGGCAACAGCGGCCTACTGGCGTCAAGCCAAG]

[+] EMBL CA752672             [CCGGTCTCCTTGGGCTTTCCCTTTGGTTCTTTTCGTCCTACCTCTTAATTTGTCATCTCGGGGGAGCAGAAATCTTTCCTGATCTTCCTCCCATGGTTGCTGCTTTCCTGCTTTGCCTTTGCTTGGTTGCTTGTGTTGTGTGCTGTGCTGTGCAGTGGCNATGACTGCTTTGCTGCTGCTGTTCTTAATTGCTGCATGCCATGTCTCACTTGGAAAGTATTTTTTTGCTTTGCTTTGTTTGTTTGTTTCA  CATGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCAGAGGAACAATCCAAC GGGGCAACAGAAAAGGAAATTTTCTGCTCCTGC GTTGAGTTGGTAAAATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCNTTCTT GGGATTAGCA GGATGGGGACCAG ATGACCAGATTAAGCCGCTGATATCACACCAACAGCACCAGCACCAGCACCAGCAGCAGCAGCTGGCATCGTCACTGACGGCGTGGCAACAGCGGCCTACTGGCGTCAAGCCAAG]
[+] EMBL CB638296             [                                                                                  TCTTCCTCCCATGGTTGCTGCTTTCCTGCTTTGCCTTTGCTTGGTTGCTTGTGTTGTGTGCTGTGCTGTGCAGTGGCGATGACTGCTTTGCTGCTGCTGTTCTTAATTGCTGCATGCCATGTCTCACTTGGAAAGTATTTTTTTGCTTTGCTTTGTTTGTTTGTTTCAGCCAGGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCCGAGGAACAATCCAACGGGGGCAACAGAAAAGGAAATTTTCTGCTCCTGCGGTTGAGTTGGTAAAATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGATTAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACA                                                                                       ]
[+] EMBL CB638226             [                                                                                  TCTTCCTCCC TGGTTGCTGCTTTCCTGCTTTGCCTTTGCTTGGTTGCTTGTGTTGTGTGCTGTGCTGTGCAGTGGCGATGACTGCTTTGCTGCTGCTGTTCTTAATTGCTGCATGCCATGTCTCACTTGGAAAGTATTTTTTTGCTTTGCTTTGTTTGTTTGTTTCAGCCAGGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCCGAGGAACAATCCAACGGGGGCAACAGAAAAGGAAATTTTCTGCTCCTGCGGTTGAGTTGGTAAAATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGATTAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACA                                                                                       ]




>consensus_7759#0
CCGGTCTCCTTGGGCTTTCCCTTTGGTTCTTTTCGTCCTACCTCTTAATTTGTCATCTCG
GGGGAGCAGAAATCTTTCCTGATCTTCCTCCCATGGTTGCTGCTTTCCTGCTTTGCCTTT
GCTTGGTTGCTTGTGTTGTGTGCTGTGCTGTGCAGTGGCGATGACTGCTTTGCTGCTGCT
GTTCTTAATTGCTGCATGCCATGTCTCACTTGGAAAGTATTTTTTTGCTTTGCTTTGTTT
GTTTGTTTCAGCCAGGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCCGAG
GAACAATCCAACGGGGGCAACAGAAAAGGAAATTTTCTGCTCCTGCGGTTGAGTTGGTAA
AATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGAT
TAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACACCAACAGCACCA
GCACCAGCACCAGCAGCAGCAGCTGGCATCGTCACTGACGGCGTGGCAACAGCGGCCTAC
TGGCGTCAAGCCAAG

consensusID : consensus_7759#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 409
fasta sequence

                              [GAGTG-CGTTAGGAAAGGAGCAGGAGAAGAGAGAGAGAGAGAAAGAAAAGTATGACAAGGAAATGAAAGAAATGAGACAACAACCTTGTTAGCCTTCCTCTTCCATCCTCTCCTCTCCACTTCTTGTTCTATCTTCTTCTTGGAGAGCTAGCAGGAGGAGCAAAGCAGTAGGGGAGAGAGAAGAGAGAGTGAGCCAGGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCCGAGGAACAATCCAACGGGGGCAACAGAAAAGGAAATTTTCTGCTCCTGCGGTTGAGTTGGTAAAATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGATTAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACA]

[+] EMBL CB676039             [GAGTG CGTTAGGAAAGGAGCAGGAGAAGAGAGAGAGAGAGAAAGAAAAGTATGACAAGGAAATGAAAGAAATGAGACAACAACCTTGTTAGCCTTCCTCTTCCATCCTCTCCTCTCCACTTCTTGTTCTATCTTCTTCTTGGAGAGCTAGCAGGAGGAGCAAAGCAGTAGGGGAGAGAGAAGAGAGAGTGAGCCAGGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCCGAGGAACAATCCAACGGGGGCAACAGAAAAGGAAATTTTCTGCTCCTGCGGTTGAGTTGGTAAAATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGATTAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACA]
[+] EMBL CB676078             [GAGTGTCG TAGGAAAGGAGCAGGAGAAGAGAGAGAGAGAGAAAGAAAAGTATGACAAGGAAATGAAAGAAATGAGACAACAACCTTGTTAGCCTTCCTCTTCCATCCTCTCCTCTCCACTTCTTGTTCTATCTTCTTCTTGGAGAGCTAGCAGGAGGAGCAAAGCAGTAGGGGAGAGAGAAGAGAGAGTGAGCCAGGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCCGAGGAACAATCCAACGGGGGCAACAGAAAAGGAAATTTTCTGCTCCTGCGGTTGAGTTGGTAAAATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGATTAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACA]




>consensus_7759#1
GAGTGCGTTAGGAAAGGAGCAGGAGAAGAGAGAGAGAGAGAAAGAAAAGTATGACAAGGA
AATGAAAGAAATGAGACAACAACCTTGTTAGCCTTCCTCTTCCATCCTCTCCTCTCCACT
TCTTGTTCTATCTTCTTCTTGGAGAGCTAGCAGGAGGAGCAAAGCAGTAGGGGAGAGAGA
AGAGAGAGTGAGCCAGGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCCGA
GGAACAATCCAACGGGGGCAACAGAAAAGGAAATTTTCTGCTCCTGCGGTTGAGTTGGTA
AAATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGA
TTAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7759#0      CCGGTCTCCTTGGGCTTTCCCTTTGGTTCTTTTCGTCCTACCTCTTAATTTGTCATCTCG 60
consensus_7759#1      ---------------------------------------------GAGTGCGTTAGG--A 13
                                                                    * *  ** *     

consensus_7759#0      GGGGAGCAGAAATCTTTCCTGATCTTCCTCCCATGGTTGCTGCTTTCCTGCTTTGCCTTT 120
consensus_7759#1      AAGGAGCAGGAGAAGAGAGAGAGAGA----GAAAGAAAAGTATGACAAGGAAATGAAAGA 69
                        ******* *         **          * *     *        *   **     

consensus_7759#0      GCTTGGTTGCTTGTGTTGTGTGCTGTGCTGTGCAGTGGCGATGACTGCTTTGCTGCTGCT 180
consensus_7759#1      AATGAGACAACAACCTTGTTAGCCTTCCTCTTCC------ATCCTCTCCTCTCCACTTCT 123
                        *  *         ****  **  * ** * *       **     * *  *  ** **

consensus_7759#0      GTTCTTAATTGCTGCATGCCATGTCTCACTTGGAAAGTATTTTTTTGCTTTGCTTTGTTT 240
consensus_7759#1      TGTTCTATCTTCTTCTTGG-AGAGCTAGCAGGAGGAGCAAAGCAGTAGGG-GAGAGAGAA 181
                        *  **  * ** * **  *   **  *  *   ** *      *     *        

consensus_7759#0      GTTTGTTTCAGCCAGGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCCGAG 300
consensus_7759#1      GAGAGAGTGAGCCAGGGGGGAAGAAGGAAGGAAGAAGAAGAACACTGCTGCCAATCCGAG 241
                      *   *  * ***************************************************

consensus_7759#0      GAACAATCCAACGGGGGCAACAGAAAAGGAAATTTTCTGCTCCTGCGGTTGAGTTGGTAA 360
consensus_7759#1      GAACAATCCAACGGGGGCAACAGAAAAGGAAATTTTCTGCTCCTGCGGTTGAGTTGGTAA 301
                      ************************************************************

consensus_7759#0      AATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGAT 420
consensus_7759#1      AATTTGGGAGGTGATGGCATCGAATTCATCGGCTGCAGCTGCGGCGGCGTTCTTCGGGAT 361
                      ************************************************************

consensus_7759#0      TAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACACCAACAGCACCA 480
consensus_7759#1      TAGCAGGGATGGGGACCAGCATGACCAGATTAAGCCGCTGATATCACA------------ 409
                      ************************************************            

consensus_7759#0      GCACCAGCACCAGCAGCAGCAGCTGGCATCGTCACTGACGGCGTGGCAACAGCGGCCTAC 540
consensus_7759#1      ------------------------------------------------------------
                                                                                  

consensus_7759#0      TGGCGTCAAGCCAAG 555
consensus_7759#1      ---------------