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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1350 fasta sequence
[GGTGCTGGGGAAATGTTCCTGCCACCATCACTTAATGATCTATATATTCAGATCATGTGGGTGAACTATGGAGCGTATTAGTGGGTTGTGGTCACTGGCAAAGAGCAAACCAACTCATCCAATCTCTCCGTATTGAATCTGAATAACTGCTCGAACCTGGTAACCCTCCCCTCTGCAGAAGCTTTCAGTAGGAATCTCACCTCGCTGCAGATCATCATCATACAGAAATGTGGGAATCTGTCATCCTTGGGTGGGCTTGAATCCCTTCCATCCCTCTCTGAATTAACAATCAGACGTTGTGCTAAACTCACAAAATTTGGTTCATCCGTAAATCCATATGTATCTGGTGGTGAAGAAGAGCATCTGGTGGATGCAAGAAGTGCCCTGCGTATCAG-CTCTCTTACAATTGATCTTCCATCCCTGCTGCTTGTTGAGCCTCTCAAGAGTCTCTGCCACACTGAACACTTAGAAATTGAAGATGCGTCACAGATG-AAGAGCTTACCTGATCGTTGGCTGCTGCAGAACAGTGCATCTCTCAAATCCCTACACATACGCAAAGTCAAGTCCTTAGAATCTCTCCAACCCAGCATGCGAGACCTAACCTCCCTCCAGAAATTGACGCTATCTGGTGTTGGCCAACTCCTCGGTTCACTTCCAGATTTTCCCACCTCTCTGTTGGAGCTGGATATTTCGGAATGTGGTTCAGAGTTGAAGAAGAAATTTAGAAAACATGGAAGCCCTGAAAGAAGCAAGATTGCCCACATCCTCAGAGTGAGAATAGACACAGACTACAACTACATAAATATAACAGGAAGCTCGCTCTTCATCATGGGAAAGGAATGCTATGGAGAGTGAAGAGACTAAGAGGAGATTATTGTATGCGGACCATGAAGAAATATTTTCCTGGTTGGACGAATCAAAACATGTCCAGGGAATTGGGTCAGTATCACGCTGGTTCAGTGAACAAATGGTCTCTACGAAACACCAGTTATTAGACGGTTGTTGCTCCAGTAAATATTGAGCCAAATCCTTCATGCGTTGCCAGGAAAGTATAGCAGACCATATTCTTCCATCTGGGCTTACTGATGACGGTTTTCTATGGACGATTGTTCCATCTTTTTATGCATTTACAAC-AAGAAACATTCAGTTTGACGCGTGCAAGTGCATGCATGCAGCAATACCAGCAGGAGAACCAAAGTTTTTGATTCTTAATTGGAGATCTCATGGACAATGTAGATTTGAATGTGCAGTTTTGGTTTGTATGTCACTGATGAATTTCAATTCTAGTGCTTGAGGCTGGCTGTAGAATTTATTGTCTTCCTGGGATCATACTACTAGAGTATAGCTTGT]
[+] EMBL CA753042 [GGTGCTGGGGAAATGTTCCTGCCACCATCACTTAATGATCTATATATTCAGATCATGTGGGTGAACTATGGAGCGTATTAGTGGGTTGTGGTCACTGGCAAAGAGCAAACCAACTCATCCAATCTCTCCGTATTGAATCTGAATAACTGCTCGAACCTGGTAACCCTCCCCTCTGCAGAAGCTTTCAGTAGGAATCTCACCTCGCTGCAGATCATCATCATACAGAAATGTGGGAATCTGTCATCCTTGGGTGGGCTTGAATCCCTTCCATCCCTCTCTGAATTAACAATCAGACGTTGTGCTAAACTCACAAAATTTGGTTCATCCGTAAATCCATATGTATCTGGTGGTGAAGAAGAGCATCTGGTGGATGCAAGAAGTGCCCTGCGTATCAG CTCTCTTACAATTGATCTTCCATCCCTGCTGCTTGTAGAGCCTCTCAAGAGTCTCTGCCACACTGAACACTTAGAAATTGAAGATGCGTCACAGATGAAAGAGCTTACCTGATCGTGGGCTGCTGCAGAACAGTGCATCTCTCAAATTCCTACCCATACGCAAAGTCCACTCCTTA ]
[+] EMBL AK059152 [ TGCTAAACTCACAAAATTTGGTTCATCCGTAAATCCATATGTATCTGGTGGTGAAGAAGAGCATCTGGTGGATTCAAGAAGTTCCCTGCGTATCAG CTCTCTTACAATTGATCTTCCATCCCTGCTGCTTGTTGAGCCTCTCAAGAGTCTCTGCCACACTGAACACTTAGAAATTGAAGATGCGTCACAGATG AAGAGCTTACCTGATCGTTGGCTGCTGCAGAACAGTGCATCTCTCAAATCCCTACACATACGCAAAGTCAAGTCCTTAGAATCTCTCCAACCCAGCATGCGAGACCTAACCTCCCTCCAGAAATTGACGCTATCTGGTGTTGGCCAACTCCTCGGTTCACTTCCAGATTTTCCCACCTCTCTGTTGGAGCTGGATATTTCGGAATGTGGTTCAGAGTTGAAGAAGAAATTTAGAAAACATGGAAGCCCTGAAAGAAGCAAGATTGCCCACATCCTCAGAGTGAGAATAGACACAGACTACAACTACATAAATATAACAGGAAGCTCGCTCTTCATCATGGGAAAGGAATGCTATGGAGAGTGAAGAGACTAAGAAGAGATTATTGTATGCGGACCATGAAGAAATATTTTCCTGGTTGGACGAATCAAAACATGTCCAGGGAATTGGGTCAGTATCACGCTGGTTCAGTGAACAAATGGTCTCTACGAAACACCAGTTATTAGACGGTTGTTGCTCCAGTAAATATTGAGCCAAATCCTTCATGCGTTGCCAGGAAAGTATAGCAGACCATATTCTTCCATCTGGGCTTACTGATGACGGTTTTCTATGGACGATTGTTCCATCTTTTTATGCATTTACAAC AAGAAACATTCAGTTTGACGCGTGCAAGTGCATGCATGCAGCAATACCAGCAGGAGAACCAAAGTTTTTGATTCTTAATTGGAGATCTCATGGACAATGTAGATTTGAATGTGCAGTTTTGGTTTGTATGTCACTGATGAATTTCAATTCTAGTGCTTGAGGCTGGCTGTAGAATTTATTGTCTTCCTGGGATCATACTACTAGAGTATAGCTTG ]
[+] EMBL CB682839 [ tgGCGTATCAGTCTCTCTTACAATTGATCTTCCATCCCTGCTGCTTGTTGAGCCTCTCAAGAGTCTCTGCCACACTGAACACTTAGAAATTGAAGATGCGTCACAGATG AAGAGCTTACCTGATCGTTGGCTGCTGCAGAACAGTGCATCTCTCAAATCCCTACACATACGCAAAGTCAAGTCCTTAGAATCTCTCCAACCCAGCATGCAAGACCTAACCTCCCTCCAGAAATTGACGCTATCTGGTGTTGGCCAACTCCTCGGTTCACTTCCAGATTTTCCCACCTCTCTGTTGGAGCTGGATATTTCGGAATGTGGTTCAGAGTTGAAGAAGAAATTTAGAAAACATGGAAGCCCTGAAAGAAGCAAGATTGCCCACATCCTCAGAGTGAGAATAGACACAGACTACAACTACATAAATATAACAGGAAGCTCGCTCTTCATCATGGGAAAGGAATGCTATGGAGAGTGAAGAGACTAAGAGGAGATTATTGTATGCGGACCATGAAGAAATATTTTCCTGGTTGGACGAATCAAAACATGTCCAGGGAATTGGGTCAGTATCACGCTGGTTCAGTGAACAAATGGTCTCTACGAAACACCAGTTATTAGACGGTTGTTGCTCCAGTAAATATTGAGCCAAATCCTTCATGCGTTGCCAGGAAAGTATAGCAGACCATATTCTTCCATCTGGGCTTACTGATGACGGTTTTCTATGGACGATTGTTCCATCTTTTTATGCATTTACAACAAAGAAACATTCAGTTTGACGCGTGCAAGTGCATGCATGC ]
[-] EMBL CB673346 [ CTCTCTGTTGGAGCTGGATATTTCGGAATGTGGTTCAGAGTTGAAGAAGAAATTTAGAAAACATGGAAGCCCTGAAAGAAGCAAGATTGCCCACATCCTCAGAGTGAGAATAGACACAGCCTACAACTACATAAATATAACAGGAAGCTCGCTCTTCATCATGGGAAAGGAATGCTATGGAGAGTGAAGAGACTAAGAGGAGATTATTGTATGCGGCCCATGAAGAAATATTTTCCTGGTTGGCCGAATCAAAACATGTCCAGGGAATGGGGTCAGTATCACGCTGGTTCAGTGAACAAATGGTCTCTACGAAACACCAGTTATTAGCCGGTTGTTGCTCCAGTAAATATTGAGCCAAATCCTTCATGCGTTGCCAGGAAAGTATAGCAGCCCATATTCTTCCATCTGGGCTTACGGATGCCGGTTTTCTATGGACGATTGTTCCATCTTTTTAGGCATTTACACC AAGAAACATTCAGTTTGACGCGTGCAAGTGCATGCATGCAGCAATACCAGCAGGAGAACCAAAGTTTTTGATTCTTAATTGGAGATCTCATGGCCAATGTAGATTTGAATGTGCAGTTTTGGTTTGTATGTCACTGATGAATTTCAATTTTAGTGCTGGAGGCGGGCTGTAGAATTTATTGTCTTCCTGGGATCATACTCCTAGAGTATAGCTTGT]
consensusID : consensus_7767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 811 fasta sequence
[CATGTGGTGACTATGAGCGTATAGTGGTTGTGTCACTGCAAGAGCAACAACTCATCAATCTCTCCGTATTGAATCTGAATAACTGCTCGAACCTGGTAACCCTCCCCTCTGCAGAAGCTTTCAGTAGGAATCTCACCTCGCTGCAGATCATCATCATACAGAAATGTGGGAATCTGTCATCCTTGGGTGGGCTTGAATCCCTTCCATCCCTCTCTGAATTAACAATCAGACGTTGTGCTAAACTCACAAAATTTGGTTCATCCGTAAATCCATATGTATCTGGTGGTGAAGAAGAGCATCTGGTGGATTCAAGAAGTTCCCTGCGTATCAGCTCTCTTACAATTGATCTTCCATCCCTGCTGCTTGTTGAGCCTCTCAAGAGTCTCTGCCACACTGAACACTTAGAAATTGAAGATGCGTCACAGATGAAGAGCTTACCTGATCGTTGGCTGCTGCAGAACAGTGCATCTCTCAAATCCCTACACATACGCAAAGTCAAGTCCTTAGAATCTCTCCAACCCAGCATGCGAGACCTAACCTCCCTCCAGAAATTGCCGCTATCTGGTGTTGGCCAACTCCTCGGTTCACTTCCAGATTTTCCCACCTCTCTGTTGGAGCTGGATATTTCGGAATGTGGTTCAGAGTTGAAGAAGAAATTTAGAAAACATGGAAGCCCTGAAAGAAGCATGATTGCCCACATCCTCAGAGTGAGAATAGACACAGACTACAACTACATAAATATAACAGGAGAGAGTGAATGGACTAAGAGGAGATTATTGTAAGTTTATTTCCTTGGGGATATATCTATCTA]
[-] EMBL CB630292 [CATGTGGTGACTATGAGCGTATAGTGGTTGTGTCACTGCAAGAGCAACAACTCATCAATCTCTCCGTATTGAATCTGAATAACTGCTCGAACCTGGTAACCCTCCCCTCTGCAGAAGCTTTCAGTAGGAATCTCACCTCGCTGCAGATCATCATCATACAGAAATGTGGGAATCTGTCATCCTTGGGTGGGCTTGAATCCCTTCCATCCCTCTCTGAATTAACAATCAGACGTTGTGCTAAACTCACAAAATTTGGTTCATCCGTAAATCCATATGTATCTGGTGGTGAAGAAGAGCATCTGGTGGATTCAAGAAGTTCCCTGCGTATCAGCTCTCTTACAATTGATCTTCCATCCCTGCTGCTTGTTGAGCCTCTCAAGAGTCTCTGCCACACTGAACACTTAGAAATTGAAGATGCGTCACAGATGAAGAGCTTACCTGATCGTTGGCTGCTGCAGAACAGTGCATCTCTCAAATCCCTACACATACGCAAAGTCAAGTCCTTAGAATCTCTCCAACCCAGCATGCGAGACCTAACCTCCCTCCAGAAATTGCCGCTATCTGGTGTTGGCCAACTCCTCGGTTCACTTCCAGATTTTCCCACCTCTCTGTTGGAGCTGGATATTTCGGAATGTGGTTCAGAGTTGAAGAAGAAATTTAGAAAACATGGAAGCCCTGAAAGAAGCATGATTGCCCACATCCTCAGAGTGAGAATAGACACAGACTACAACTACATAAATATAACAGGAGAGAGTGAATGGACTAAGAGGAGATTATTGTAAGTTTATTTCCTTGGGGATATATCTATCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7767#0 GGTGCTGGGGAAATGTTCCTGCCACCATCACTTAATGATCTATATATTCAGATCATGTGG 60
consensus_7767#1 -----------------------------------------------------CATGTGG 7
*******
consensus_7767#0 GTGAACTATGGAGCGTATTAGTGGGTTGTGGTCACTGGCAAAGAGCAAACCAACTCATCC 120
consensus_7767#1 T--GACTATG-AGCGTAT-AGTGG-TTGTG-TCACTG--CAAGAGCAA--CAACTCATC- 56
****** ******* ***** ***** ****** ******** *********
consensus_7767#0 AATCTCTCCGTATTGAATCTGAATAACTGCTCGAACCTGGTAACCCTCCCCTCTGCAGAA 180
consensus_7767#1 AATCTCTCCGTATTGAATCTGAATAACTGCTCGAACCTGGTAACCCTCCCCTCTGCAGAA 116
************************************************************
consensus_7767#0 GCTTTCAGTAGGAATCTCACCTCGCTGCAGATCATCATCATACAGAAATGTGGGAATCTG 240
consensus_7767#1 GCTTTCAGTAGGAATCTCACCTCGCTGCAGATCATCATCATACAGAAATGTGGGAATCTG 176
************************************************************
consensus_7767#0 TCATCCTTGGGTGGGCTTGAATCCCTTCCATCCCTCTCTGAATTAACAATCAGACGTTGT 300
consensus_7767#1 TCATCCTTGGGTGGGCTTGAATCCCTTCCATCCCTCTCTGAATTAACAATCAGACGTTGT 236
************************************************************
consensus_7767#0 GCTAAACTCACAAAATTTGGTTCATCCGTAAATCCATATGTATCTGGTGGTGAAGAAGAG 360
consensus_7767#1 GCTAAACTCACAAAATTTGGTTCATCCGTAAATCCATATGTATCTGGTGGTGAAGAAGAG 296
************************************************************
consensus_7767#0 CATCTGGTGGATGCAAGAAGTGCCCTGCGTATCAGCTCTCTTACAATTGATCTTCCATCC 420
consensus_7767#1 CATCTGGTGGATTCAAGAAGTTCCCTGCGTATCAGCTCTCTTACAATTGATCTTCCATCC 356
************ ******** **************************************
consensus_7767#0 CTGCTGCTTGTTGAGCCTCTCAAGAGTCTCTGCCACACTGAACACTTAGAAATTGAAGAT 480
consensus_7767#1 CTGCTGCTTGTTGAGCCTCTCAAGAGTCTCTGCCACACTGAACACTTAGAAATTGAAGAT 416
************************************************************
consensus_7767#0 GCGTCACAGATGAAGAGCTTACCTGATCGTTGGCTGCTGCAGAACAGTGCATCTCTCAAA 540
consensus_7767#1 GCGTCACAGATGAAGAGCTTACCTGATCGTTGGCTGCTGCAGAACAGTGCATCTCTCAAA 476
************************************************************
consensus_7767#0 TCCCTACACATACGCAAAGTCAAGTCCTTAGAATCTCTCCAACCCAGCATGCGAGACCTA 600
consensus_7767#1 TCCCTACACATACGCAAAGTCAAGTCCTTAGAATCTCTCCAACCCAGCATGCGAGACCTA 536
************************************************************
consensus_7767#0 ACCTCCCTCCAGAAATTGACGCTATCTGGTGTTGGCCAACTCCTCGGTTCACTTCCAGAT 660
consensus_7767#1 ACCTCCCTCCAGAAATTGCCGCTATCTGGTGTTGGCCAACTCCTCGGTTCACTTCCAGAT 596
****************** *****************************************
consensus_7767#0 TTTCCCACCTCTCTGTTGGAGCTGGATATTTCGGAATGTGGTTCAGAGTTGAAGAAGAAA 720
consensus_7767#1 TTTCCCACCTCTCTGTTGGAGCTGGATATTTCGGAATGTGGTTCAGAGTTGAAGAAGAAA 656
************************************************************
consensus_7767#0 TTTAGAAAACATGGAAGCCCTGAAAGAAGCAAGATTGCCCACATCCTCAGAGTGAGAATA 780
consensus_7767#1 TTTAGAAAACATGGAAGCCCTGAAAGAAGCATGATTGCCCACATCCTCAGAGTGAGAATA 716
******************************* ****************************
consensus_7767#0 GACACAGACTACAACTACATAAATATAACAGGAAGCTCGCTCTTCATCATGGGAAAGGAA 840
consensus_7767#1 GACACAGACTACAACTACATAAATATAACAGGA--------------------------- 749
*********************************
consensus_7767#0 TGCTATGGAGAGTGAAGAGACTAAGAGGAGATTATTGTATGCGGA---CCATGAAGAAAT 897
consensus_7767#1 -------GAGAGTGAATGGACTAAGAGGAGATTATTGTAAGTTTATTTCCTTGGGGATAT 802
********* ********************* * * ** ** ** **
consensus_7767#0 ATTTTCCTGGTTGGACGAATCAAAACATGTCCAGGGAATTGGGTCAGTATCACGCTGGTT 957
consensus_7767#1 ATCTATCTA--------------------------------------------------- 811
** * **
consensus_7767#0 CAGTGAACAAATGGTCTCTACGAAACACCAGTTATTAGACGGTTGTTGCTCCAGTAAATA 1017
consensus_7767#1 ------------------------------------------------------------
consensus_7767#0 TTGAGCCAAATCCTTCATGCGTTGCCAGGAAAGTATAGCAGACCATATTCTTCCATCTGG 1077
consensus_7767#1 ------------------------------------------------------------
consensus_7767#0 GCTTACTGATGACGGTTTTCTATGGACGATTGTTCCATCTTTTTATGCATTTACAACAAG 1137
consensus_7767#1 ------------------------------------------------------------
consensus_7767#0 AAACATTCAGTTTGACGCGTGCAAGTGCATGCATGCAGCAATACCAGCAGGAGAACCAAA 1197
consensus_7767#1 ------------------------------------------------------------
consensus_7767#0 GTTTTTGATTCTTAATTGGAGATCTCATGGACAATGTAGATTTGAATGTGCAGTTTTGGT 1257
consensus_7767#1 ------------------------------------------------------------
consensus_7767#0 TTGTATGTCACTGATGAATTTCAATTCTAGTGCTTGAGGCTGGCTGTAGAATTTATTGTC 1317
consensus_7767#1 ------------------------------------------------------------
consensus_7767#0 TTCCTGGGATCATACTACTAGAGTATAGCTTGT 1350
consensus_7767#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||