These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7770#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 874 fasta sequence [AGCTCGTCATTAAGAGCGAAAGAAAGTTACTTGGAATTCTTTGGTTTGTTGTAATGACAATCACGAGAGAAGAAGCGGAGAGCAAGGAGATGGAGAGCCTACGGGTGCACGCCAGCGCGCTGCTCTCGCTGTCGTCGCCTGCAGCGTCGGCGTCGCAGCCGACGTCGTCGTCGTCGACGACGGAGGGGGTGTTCGAGTGCAAGACGTGCAGCAAGCGGTTCCCGTCGTTCCAGGCGCTGGGCGGGCACCGGACGAGCCACACGCGGCTGCAGGCGAAGCTGCTGAGCGACCCCGCCGCGGCGGCGGCGGCGGCGGCCGAGAGGGACAGGGCACGCGTCCACGAGTGCGCCGTGTGCGGGGTCGAGTTCTCCATGGGGCAGGCGCTCGGCGGCCACATGCGCCGGCACAGGGGCGAGACGGGCACGACGACCGTCGTGCTCGCGGACGCCGACGACTCGGGCGGCGCCACCGTGCCGCAGCCGCCGGAGCCCATGCCGGACCTGAACTACCCGCCGCTGGAGGACGCCGGCGACGGCTCGGAGCCTGAGTTACTTAACCTTCTTGTATAAGTTGCATCGATAGATATACATGTGAATTGAATTGGCGTCTGTACATAGATATGGTGGATGGATTCTTTACCAAATTTGATCGAAAAAAAGAACTAAATTTTGGAGCGTGATGATCATAGCATGTAAGTTGTAACAAATGATTGTTAACTGTAAGATAGGAATTCTATTCATTTGTTCTCTTCTGTACAAAATTACAAATAGGTTGATTAATTAGTTGGTCGGTTGTGGTTGATTCTTTGTAAAATACCAATTTACTAGTATAAATATACTGACAGCTTATTGTTTCAAAAAAAAAAAAAAAAAAA] [+] EMBL AK108227 [AGCTCGTCATTAAGAGCGAAAGAAAGTTACTTGGAATTCTTTGGTTTGTTGTAATGACAATCACGAGAGAAGAAGCGGAGAGCAAGGAGATGGAGAGCCTACGGGTGCACGCCAGCGCGCTGCTCTCGCTGTCGTCGCCTGCAGCGTCGGCGTCGCAGCCGACGTCGTCGTCGTCGACGACGGAGGGGGTGTTCGAGTGCAAGACGTGCAGCAAGCGGTTCCCGTCGTTCCAGGCGCTGGGCGGGCACCGGACGAGCCACACGCGGCTGCAGGCGAAGCTGCTGAGCGACCCCGCCGCGGCGGCGGCGGCGGCGGCCGAGAGGGACAGGGCACGCGTCCACGAGTGCGCCGTGTGCGGGGTCGAGTTCTCCATGGGGCAGGCGCTCGGCGGCCACATGCGCCGGCACAGGGGCGAGACGGGCACGACGACCGTCGTGCTCGCGGACGCCGACGACTCGGGCGGCGCCACCGTGCCGCAGCCGCCGGAGCCCATGCCGGACCTGAACTACCCGCCGCTGGAGGACGCCGGCGACGGCTCGGAGCCTGAGTTACTTAACCTTCTTGTATAAGTTGCATCGATAGATATACATGTGAATTGAATTGGCGTCTGTACATAGATATGGTGGATGGATTCTTTACCAAATTTGATCGAAAAAAAGAACTAAATTTTGGAGCGTGATGATCATAGCATGTAAGTTGTAACAAATGATTGTTAACTGTAAGATAGGAATTCTATTCATTTGTTCTCTTCTGTACAAAATTACAAATAGGTTGATTAATTAGTTGGTCGGTTGTGGTTGATTCTTTGTAAAATACCAATTTACTAGTATAAATATACTGACAGC ] [+] EMBL AY077725 [ TAAGAGCGAAAGAAAGTTACTTGGAATTCTTTGGTTTGTTGTAATGACAATCACGAGAGAAGAAGCGGAGAGCAAGGAGATGGAGAGCCTACGGGTGCACGCCAGCGCGCTGCTCTCGCTGTCGTCGCCTGCAGCGTCGGCGTCGCAGCCGACGTCGTCGTCGTCGACGACGGAGGGGGTGTTCGAGTGCAAGACGTGCAGCAAGCGGTTCCCGTCGTTCCAGGCGCTGGGCGGGCACCGGACGAGCCACACGCGGCTGCAGGCGAAGCTGCTGAGCGACCCCGCCGCGGCGGCGGCGGCGGCGGCCGAGAGGGACAGGGCACGCGTCCACGAGTGCGCCGTGTGCGGGGTCGAGTTCTCCATGGGGCAGGCGCTCGGCGGCCACATGCGCCGGCACAGGGGCGAGACGGGCACGACGACCGTCGTGCTCGCGGACGCCGACGACTCGGGCGGCGCCACCGTGCCGCAGCCGCCGGAGCCCATGCCGGACCTGAACTACCCGCCGCTGGAGGACGCCGGCGACGGCTCGGAGCCTGAGTTACTTAACCTTCTTGTATAAGTTGCATCGATAGATATACATGTGAATTGAATTGGCGTCTGTACATAGATATGGTGGATGGATTCTTTACCAAATTTGATCGAAAAAAAGAACTAAATTTTGGAGCGTGATGATCATAGCATGTAAGTTGTAACAAATGATTGTTAACTGTAAGATAGGAATTCTATTCATTTGTTCTCTTCTGTACAAAATTACAAATAGGTTGATTAATTAGTTGGTCGGTTGTGGTTGATTCTTTGTAAAATACCAATTTACTAGTATAAATATACTGACAGCTTATTGTTTCAAAAAAAAAAAAAAAAAAA] [+] EMBL AU076065 [ TAAGAGCGAAAGAAAGTTACTTGGAATTCTTTGGTTTGTTGTAATGACAATCACGAGAGAAGAAGCGGAGAGCAAGGAGATGGAGAGCCTACGGGTGCACGCCAGCGCGCTGCTCTCGCTGTCGTCGCCTGCAGCGTCGGCGTCGCAGCCGACGTCGTCGTCGTCGACGACGGAGGGGGTGTTCGAGTGCAAGACGTGCAGCAAGCGGTTCCCGTCGTTCCAGGCGCTGGGCGGGCACCGGACGAGCCACACGCGGCTGCAGGCGAAGCTGCTGAGCGACCCCGCCGCGGCGGCGGCGGCGGCGGCCGAGAGGGACAGGGCACGCGTCCACGAGTGCGCCGTGTGCGGGGTCGAGTTCTCCATGGGGCAGGCGCTCGGCGG CACATGCGCCGGCACAGGGGCGAGACGGGCACGACGACCGTCGTGCTCGCGGACGCCGACGACTCGGGCGGCGCCACCGTGCCG AACCGGCGGA CCCATGCCGGACCTGAACTACCCG ] [+] EMBL AU076066 [ cGGCGGCGCCACCGTGCCGCANCCGCCGGAGCCCATGCCGGACCTGAACTACCCGCCGCTGGAGGACGCCGGCGACGGCTCGGAGCCTGAGTTACTTAACCTTCTTGTATAAGTTGCATCGATAGATATACATGTGAATTGAATTGGNGTCTGTACATAGATATGGTGGATGGATTCTTTACCAAATTTGATCGAAAAAAAGAACTAAATTTTGGAGCGTGATGATCATAGCATGTAAGTTGTAACAAATGATTGTTAACTGTAAGATAGGAATTCTATTCATTTGTTCTCTTCTGTACAAAATTACAAATAGGTTGATTAATTAGTTGGTCGGTTGTGGTTGATTCTTTGTAAAATACCAATTTACTAGTATAAATATACTGACAGCTTATTGTTTCAAAAAAAAAAAAAAAAAAA] consensusID : consensus_7770#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [GCACTGACGTCGTCGTCGACGCCGGCGGGCAGCAGGGCGCTGGCGGCGGAGGGGGTGTTCGAGTGCAAGACGTGCAACAAGTCGTTCCCGTCGCTCCAGGGGCTGGGCGGGCACCGGACAAGCCACACGCGGCTGCAGGCGAAGCTGCTGAGCGACCCCGCCGCCGCAGCGGCCGAGAGGGACAGGGCACGCATCCACGAGTGCGCCGCGTGCGCGGGGTCGAGTTCTCCATGGGGCAGGCGCTCGGCGGCCACATGCGCCGGCACAGGGGCGAGACGGGCACGACGACCGTCGTGCTCACGGCCGCCGACGTCGACGACTCGGGCGGCGCCACCGTGCCGCAGCCGCCGGAGGCCATGCTGG] [+] EMBL AY305867 [GCACTGACGTCGTCGTCGACGCCGGCGGGCAGCAGGGCGCTGGCGGCGGAGGGGGTGTTCGAGTGCAAGACGTGCAACAAGTCGTTCCCGTCGCTCCAGGGGCTGGGCGGGCACCGGACAAGCCACACGCGGCTGCAGGCGAAGCTGCTGAGCGACCCCGCCGCCGCAGCGGCCGAGAGGGACAGGGCACGCATCCACGAGTGCGCCGCGTGCGCGGGGTCGAGTTCTCCATGGGGCAGGCGCTCGGCGGCCACATGCGCCGGCACAGGGGCGAGACGGGCACGACGACCGTCGTGCTCACGGCCGCCGACGTCGACGACTCGGGCGGCGCCACCGTGCCGCAGCCGCCGGAGGCCATGCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7770#0 AGCTCGTCATTAAGAGCGAAAGAAAGTTACTTGGAATTCTTTGGTTTGTTGTAATGACAA 60 consensus_7770#1 ------------------------------------------------------------ consensus_7770#0 TCACGAGAGAAGAAGCGGAGAGCAAGGAGATGGAGAGCCTACGGGTGCACGCCAGCGCGC 120 consensus_7770#1 ------------------------------------------------------------ consensus_7770#0 TGCTCTCGCTGTCGTCGCCTGCAGCGTCGGCGTCGCAGCCGACGTCGTCGTCGTCGACGA 180 consensus_7770#1 -----GCACTGACGTCGTCGTCGACGCCGGCGG-GCAGCAG--------GGCGCTGGCGG 46 * *** ***** * * ** ***** ***** * * ** * ** consensus_7770#0 CGGAGGGGGTGTTCGAGTGCAAGACGTGCAGCAAGCGGTTCCCGTCGTTCCAGGCGCTGG 240 consensus_7770#1 CGGAGGGGGTGTTCGAGTGCAAGACGTGCAACAAGTCGTTCCCGTCGCTCCAGGGGCTGG 106 ****************************** **** ********** ****** ***** consensus_7770#0 GCGGGCACCGGACGAGCCACACGCGGCTGCAGGCGAAGCTGCTGAGCGACCCCGCCGCGG 300 consensus_7770#1 GCGGGCACCGGACAAGCCACACGCGGCTGCAGGCGAAGCTGCTGAGCGACCCCGCCGCCG 166 ************* ******************************************** * consensus_7770#0 CGGCGGCGGCGGCGGCCGAGAGGGACAGGGCACGCGTCCACGAGTGCGCCGTGTGCG--G 358 consensus_7770#1 CAGC---------GGCCGAGAGGGACAGGGCACGCATCCACGAGTGCGCCGCGTGCGCGG 217 * ** ********************** *************** ***** * consensus_7770#0 GGTCGAGTTCTCCATGGGGCAGGCGCTCGGCGGCCACATGCGCCGGCACAGGGGCGAGAC 418 consensus_7770#1 GGTCGAGTTCTCCATGGGGCAGGCGCTCGGCGGCCACATGCGCCGGCACAGGGGCGAGAC 277 ************************************************************ consensus_7770#0 GGGCACGACGACCGTCGTGCTCGCGG------ACGCCGACGACTCGGGCGGCGCCACCGT 472 consensus_7770#1 GGGCACGACGACCGTCGTGCTCACGGCCGCCGACGTCGACGACTCGGGCGGCGCCACCGT 337 ********************** *** *** ************************ consensus_7770#0 GCCGCAGCCGCCGGAGCCCATGCCGGACCTGAACTACCCGCCGCTGGAGGACGCCGGCGA 532 consensus_7770#1 GCCGCAGCCGCCGGAGGCCATGCTGG---------------------------------- 363 **************** ****** ** consensus_7770#0 CGGCTCGGAGCCTGAGTTACTTAACCTTCTTGTATAAGTTGCATCGATAGATATACATGT 592 consensus_7770#1 ------------------------------------------------------------ consensus_7770#0 GAATTGAATTGGCGTCTGTACATAGATATGGTGGATGGATTCTTTACCAAATTTGATCGA 652 consensus_7770#1 ------------------------------------------------------------ consensus_7770#0 AAAAAAGAACTAAATTTTGGAGCGTGATGATCATAGCATGTAAGTTGTAACAAATGATTG 712 consensus_7770#1 ------------------------------------------------------------ consensus_7770#0 TTAACTGTAAGATAGGAATTCTATTCATTTGTTCTCTTCTGTACAAAATTACAAATAGGT 772 consensus_7770#1 ------------------------------------------------------------ consensus_7770#0 TGATTAATTAGTTGGTCGGTTGTGGTTGATTCTTTGTAAAATACCAATTTACTAGTATAA 832 consensus_7770#1 ------------------------------------------------------------ consensus_7770#0 ATATACTGACAGCTTATTGTTTCAAAAAAAAAAAAAAAAAAA 874 consensus_7770#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||