cluster # 7770

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7770 cluster # 7770 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7770#0 length = 874 sequences # 4

consensus_7770#1 length = 363 sequences # 1

consensusID : consensus_7770#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 874
fasta sequence

                              [AGCTCGTCATTAAGAGCGAAAGAAAGTTACTTGGAATTCTTTGGTTTGTTGTAATGACAATCACGAGAGAAGAAGCGGAGAGCAAGGAGATGGAGAGCCTACGGGTGCACGCCAGCGCGCTGCTCTCGCTGTCGTCGCCTGCAGCGTCGGCGTCGCAGCCGACGTCGTCGTCGTCGACGACGGAGGGGGTGTTCGAGTGCAAGACGTGCAGCAAGCGGTTCCCGTCGTTCCAGGCGCTGGGCGGGCACCGGACGAGCCACACGCGGCTGCAGGCGAAGCTGCTGAGCGACCCCGCCGCGGCGGCGGCGGCGGCGGCCGAGAGGGACAGGGCACGCGTCCACGAGTGCGCCGTGTGCGGGGTCGAGTTCTCCATGGGGCAGGCGCTCGGCGGCCACATGCGCCGGCACAGGGGCGAGACGGGCACGACGACCGTCGTGCTCGCGGACGCCGACGACTCGGGCGGCGCCACCGTGCCGCAGCCGCCGGAGCCCATGCCGGACCTGAACTACCCGCCGCTGGAGGACGCCGGCGACGGCTCGGAGCCTGAGTTACTTAACCTTCTTGTATAAGTTGCATCGATAGATATACATGTGAATTGAATTGGCGTCTGTACATAGATATGGTGGATGGATTCTTTACCAAATTTGATCGAAAAAAAGAACTAAATTTTGGAGCGTGATGATCATAGCATGTAAGTTGTAACAAATGATTGTTAACTGTAAGATAGGAATTCTATTCATTTGTTCTCTTCTGTACAAAATTACAAATAGGTTGATTAATTAGTTGGTCGGTTGTGGTTGATTCTTTGTAAAATACCAATTTACTAGTATAAATATACTGACAGCTTATTGTTTCAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK108227             [AGCTCGTCATTAAGAGCGAAAGAAAGTTACTTGGAATTCTTTGGTTTGTTGTAATGACAATCACGAGAGAAGAAGCGGAGAGCAAGGAGATGGAGAGCCTACGGGTGCACGCCAGCGCGCTGCTCTCGCTGTCGTCGCCTGCAGCGTCGGCGTCGCAGCCGACGTCGTCGTCGTCGACGACGGAGGGGGTGTTCGAGTGCAAGACGTGCAGCAAGCGGTTCCCGTCGTTCCAGGCGCTGGGCGGGCACCGGACGAGCCACACGCGGCTGCAGGCGAAGCTGCTGAGCGACCCCGCCGCGGCGGCGGCGGCGGCGGCCGAGAGGGACAGGGCACGCGTCCACGAGTGCGCCGTGTGCGGGGTCGAGTTCTCCATGGGGCAGGCGCTCGGCGGCCACATGCGCCGGCACAGGGGCGAGACGGGCACGACGACCGTCGTGCTCGCGGACGCCGACGACTCGGGCGGCGCCACCGTGCCGCAGCCGCCGGAGCCCATGCCGGACCTGAACTACCCGCCGCTGGAGGACGCCGGCGACGGCTCGGAGCCTGAGTTACTTAACCTTCTTGTATAAGTTGCATCGATAGATATACATGTGAATTGAATTGGCGTCTGTACATAGATATGGTGGATGGATTCTTTACCAAATTTGATCGAAAAAAAGAACTAAATTTTGGAGCGTGATGATCATAGCATGTAAGTTGTAACAAATGATTGTTAACTGTAAGATAGGAATTCTATTCATTTGTTCTCTTCTGTACAAAATTACAAATAGGTTGATTAATTAGTTGGTCGGTTGTGGTTGATTCTTTGTAAAATACCAATTTACTAGTATAAATATACTGACAGC                             ]
[+] EMBL AY077725             [          TAAGAGCGAAAGAAAGTTACTTGGAATTCTTTGGTTTGTTGTAATGACAATCACGAGAGAAGAAGCGGAGAGCAAGGAGATGGAGAGCCTACGGGTGCACGCCAGCGCGCTGCTCTCGCTGTCGTCGCCTGCAGCGTCGGCGTCGCAGCCGACGTCGTCGTCGTCGACGACGGAGGGGGTGTTCGAGTGCAAGACGTGCAGCAAGCGGTTCCCGTCGTTCCAGGCGCTGGGCGGGCACCGGACGAGCCACACGCGGCTGCAGGCGAAGCTGCTGAGCGACCCCGCCGCGGCGGCGGCGGCGGCGGCCGAGAGGGACAGGGCACGCGTCCACGAGTGCGCCGTGTGCGGGGTCGAGTTCTCCATGGGGCAGGCGCTCGGCGGCCACATGCGCCGGCACAGGGGCGAGACGGGCACGACGACCGTCGTGCTCGCGGACGCCGACGACTCGGGCGGCGCCACCGTGCCGCAGCCGCCGGAGCCCATGCCGGACCTGAACTACCCGCCGCTGGAGGACGCCGGCGACGGCTCGGAGCCTGAGTTACTTAACCTTCTTGTATAAGTTGCATCGATAGATATACATGTGAATTGAATTGGCGTCTGTACATAGATATGGTGGATGGATTCTTTACCAAATTTGATCGAAAAAAAGAACTAAATTTTGGAGCGTGATGATCATAGCATGTAAGTTGTAACAAATGATTGTTAACTGTAAGATAGGAATTCTATTCATTTGTTCTCTTCTGTACAAAATTACAAATAGGTTGATTAATTAGTTGGTCGGTTGTGGTTGATTCTTTGTAAAATACCAATTTACTAGTATAAATATACTGACAGCTTATTGTTTCAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU076065             [          TAAGAGCGAAAGAAAGTTACTTGGAATTCTTTGGTTTGTTGTAATGACAATCACGAGAGAAGAAGCGGAGAGCAAGGAGATGGAGAGCCTACGGGTGCACGCCAGCGCGCTGCTCTCGCTGTCGTCGCCTGCAGCGTCGGCGTCGCAGCCGACGTCGTCGTCGTCGACGACGGAGGGGGTGTTCGAGTGCAAGACGTGCAGCAAGCGGTTCCCGTCGTTCCAGGCGCTGGGCGGGCACCGGACGAGCCACACGCGGCTGCAGGCGAAGCTGCTGAGCGACCCCGCCGCGGCGGCGGCGGCGGCGGCCGAGAGGGACAGGGCACGCGTCCACGAGTGCGCCGTGTGCGGGGTCGAGTTCTCCATGGGGCAGGCGCTCGGCGG CACATGCGCCGGCACAGGGGCGAGACGGGCACGACGACCGTCGTGCTCGCGGACGCCGACGACTCGGGCGGCGCCACCGTGCCG AACCGGCGGA CCCATGCCGGACCTGAACTACCCG                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU076066             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                         cGGCGGCGCCACCGTGCCGCANCCGCCGGAGCCCATGCCGGACCTGAACTACCCGCCGCTGGAGGACGCCGGCGACGGCTCGGAGCCTGAGTTACTTAACCTTCTTGTATAAGTTGCATCGATAGATATACATGTGAATTGAATTGGNGTCTGTACATAGATATGGTGGATGGATTCTTTACCAAATTTGATCGAAAAAAAGAACTAAATTTTGGAGCGTGATGATCATAGCATGTAAGTTGTAACAAATGATTGTTAACTGTAAGATAGGAATTCTATTCATTTGTTCTCTTCTGTACAAAATTACAAATAGGTTGATTAATTAGTTGGTCGGTTGTGGTTGATTCTTTGTAAAATACCAATTTACTAGTATAAATATACTGACAGCTTATTGTTTCAAAAAAAAAAAAAAAAAAA]




>consensus_7770#0
AGCTCGTCATTAAGAGCGAAAGAAAGTTACTTGGAATTCTTTGGTTTGTTGTAATGACAA
TCACGAGAGAAGAAGCGGAGAGCAAGGAGATGGAGAGCCTACGGGTGCACGCCAGCGCGC
TGCTCTCGCTGTCGTCGCCTGCAGCGTCGGCGTCGCAGCCGACGTCGTCGTCGTCGACGA
CGGAGGGGGTGTTCGAGTGCAAGACGTGCAGCAAGCGGTTCCCGTCGTTCCAGGCGCTGG
GCGGGCACCGGACGAGCCACACGCGGCTGCAGGCGAAGCTGCTGAGCGACCCCGCCGCGG
CGGCGGCGGCGGCGGCCGAGAGGGACAGGGCACGCGTCCACGAGTGCGCCGTGTGCGGGG
TCGAGTTCTCCATGGGGCAGGCGCTCGGCGGCCACATGCGCCGGCACAGGGGCGAGACGG
GCACGACGACCGTCGTGCTCGCGGACGCCGACGACTCGGGCGGCGCCACCGTGCCGCAGC
CGCCGGAGCCCATGCCGGACCTGAACTACCCGCCGCTGGAGGACGCCGGCGACGGCTCGG
AGCCTGAGTTACTTAACCTTCTTGTATAAGTTGCATCGATAGATATACATGTGAATTGAA
TTGGCGTCTGTACATAGATATGGTGGATGGATTCTTTACCAAATTTGATCGAAAAAAAGA
ACTAAATTTTGGAGCGTGATGATCATAGCATGTAAGTTGTAACAAATGATTGTTAACTGT
AAGATAGGAATTCTATTCATTTGTTCTCTTCTGTACAAAATTACAAATAGGTTGATTAAT
TAGTTGGTCGGTTGTGGTTGATTCTTTGTAAAATACCAATTTACTAGTATAAATATACTG
ACAGCTTATTGTTTCAAAAAAAAAAAAAAAAAAA

consensusID : consensus_7770#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence

                              [GCACTGACGTCGTCGTCGACGCCGGCGGGCAGCAGGGCGCTGGCGGCGGAGGGGGTGTTCGAGTGCAAGACGTGCAACAAGTCGTTCCCGTCGCTCCAGGGGCTGGGCGGGCACCGGACAAGCCACACGCGGCTGCAGGCGAAGCTGCTGAGCGACCCCGCCGCCGCAGCGGCCGAGAGGGACAGGGCACGCATCCACGAGTGCGCCGCGTGCGCGGGGTCGAGTTCTCCATGGGGCAGGCGCTCGGCGGCCACATGCGCCGGCACAGGGGCGAGACGGGCACGACGACCGTCGTGCTCACGGCCGCCGACGTCGACGACTCGGGCGGCGCCACCGTGCCGCAGCCGCCGGAGGCCATGCTGG]

[+] EMBL AY305867             [GCACTGACGTCGTCGTCGACGCCGGCGGGCAGCAGGGCGCTGGCGGCGGAGGGGGTGTTCGAGTGCAAGACGTGCAACAAGTCGTTCCCGTCGCTCCAGGGGCTGGGCGGGCACCGGACAAGCCACACGCGGCTGCAGGCGAAGCTGCTGAGCGACCCCGCCGCCGCAGCGGCCGAGAGGGACAGGGCACGCATCCACGAGTGCGCCGCGTGCGCGGGGTCGAGTTCTCCATGGGGCAGGCGCTCGGCGGCCACATGCGCCGGCACAGGGGCGAGACGGGCACGACGACCGTCGTGCTCACGGCCGCCGACGTCGACGACTCGGGCGGCGCCACCGTGCCGCAGCCGCCGGAGGCCATGCTGG]




>consensus_7770#1
GCACTGACGTCGTCGTCGACGCCGGCGGGCAGCAGGGCGCTGGCGGCGGAGGGGGTGTTC
GAGTGCAAGACGTGCAACAAGTCGTTCCCGTCGCTCCAGGGGCTGGGCGGGCACCGGACA
AGCCACACGCGGCTGCAGGCGAAGCTGCTGAGCGACCCCGCCGCCGCAGCGGCCGAGAGG
GACAGGGCACGCATCCACGAGTGCGCCGCGTGCGCGGGGTCGAGTTCTCCATGGGGCAGG
CGCTCGGCGGCCACATGCGCCGGCACAGGGGCGAGACGGGCACGACGACCGTCGTGCTCA
CGGCCGCCGACGTCGACGACTCGGGCGGCGCCACCGTGCCGCAGCCGCCGGAGGCCATGC
TGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7770#0      AGCTCGTCATTAAGAGCGAAAGAAAGTTACTTGGAATTCTTTGGTTTGTTGTAATGACAA 60
consensus_7770#1      ------------------------------------------------------------
                                                                                  

consensus_7770#0      TCACGAGAGAAGAAGCGGAGAGCAAGGAGATGGAGAGCCTACGGGTGCACGCCAGCGCGC 120
consensus_7770#1      ------------------------------------------------------------
                                                                                  

consensus_7770#0      TGCTCTCGCTGTCGTCGCCTGCAGCGTCGGCGTCGCAGCCGACGTCGTCGTCGTCGACGA 180
consensus_7770#1      -----GCACTGACGTCGTCGTCGACGCCGGCGG-GCAGCAG--------GGCGCTGGCGG 46
                            * *** ***** *  *  ** *****  ***** *        * **  * ** 

consensus_7770#0      CGGAGGGGGTGTTCGAGTGCAAGACGTGCAGCAAGCGGTTCCCGTCGTTCCAGGCGCTGG 240
consensus_7770#1      CGGAGGGGGTGTTCGAGTGCAAGACGTGCAACAAGTCGTTCCCGTCGCTCCAGGGGCTGG 106
                      ****************************** ****  ********** ****** *****

consensus_7770#0      GCGGGCACCGGACGAGCCACACGCGGCTGCAGGCGAAGCTGCTGAGCGACCCCGCCGCGG 300
consensus_7770#1      GCGGGCACCGGACAAGCCACACGCGGCTGCAGGCGAAGCTGCTGAGCGACCCCGCCGCCG 166
                      ************* ******************************************** *

consensus_7770#0      CGGCGGCGGCGGCGGCCGAGAGGGACAGGGCACGCGTCCACGAGTGCGCCGTGTGCG--G 358
consensus_7770#1      CAGC---------GGCCGAGAGGGACAGGGCACGCATCCACGAGTGCGCCGCGTGCGCGG 217
                      * **         ********************** *************** *****  *

consensus_7770#0      GGTCGAGTTCTCCATGGGGCAGGCGCTCGGCGGCCACATGCGCCGGCACAGGGGCGAGAC 418
consensus_7770#1      GGTCGAGTTCTCCATGGGGCAGGCGCTCGGCGGCCACATGCGCCGGCACAGGGGCGAGAC 277
                      ************************************************************

consensus_7770#0      GGGCACGACGACCGTCGTGCTCGCGG------ACGCCGACGACTCGGGCGGCGCCACCGT 472
consensus_7770#1      GGGCACGACGACCGTCGTGCTCACGGCCGCCGACGTCGACGACTCGGGCGGCGCCACCGT 337
                      ********************** ***      *** ************************

consensus_7770#0      GCCGCAGCCGCCGGAGCCCATGCCGGACCTGAACTACCCGCCGCTGGAGGACGCCGGCGA 532
consensus_7770#1      GCCGCAGCCGCCGGAGGCCATGCTGG---------------------------------- 363
                      **************** ****** **                                  

consensus_7770#0      CGGCTCGGAGCCTGAGTTACTTAACCTTCTTGTATAAGTTGCATCGATAGATATACATGT 592
consensus_7770#1      ------------------------------------------------------------
                                                                                  

consensus_7770#0      GAATTGAATTGGCGTCTGTACATAGATATGGTGGATGGATTCTTTACCAAATTTGATCGA 652
consensus_7770#1      ------------------------------------------------------------
                                                                                  

consensus_7770#0      AAAAAAGAACTAAATTTTGGAGCGTGATGATCATAGCATGTAAGTTGTAACAAATGATTG 712
consensus_7770#1      ------------------------------------------------------------
                                                                                  

consensus_7770#0      TTAACTGTAAGATAGGAATTCTATTCATTTGTTCTCTTCTGTACAAAATTACAAATAGGT 772
consensus_7770#1      ------------------------------------------------------------
                                                                                  

consensus_7770#0      TGATTAATTAGTTGGTCGGTTGTGGTTGATTCTTTGTAAAATACCAATTTACTAGTATAA 832
consensus_7770#1      ------------------------------------------------------------
                                                                                  

consensus_7770#0      ATATACTGACAGCTTATTGTTTCAAAAAAAAAAAAAAAAAAA 874
consensus_7770#1      ------------------------------------------