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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7772#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1513 fasta sequence
[TGGACACCGCCGCGGCGGCGGAGAGCGCAAACCCCCGCCACCCCCCTCGCCGCCCGCCGTAAAACCCTAAAACCATGGCCGCCGCGGCGGAGGCCGTCCTCTTCCTCCTCCACCACCACCTCGCCTTCTTCGGGCTACGCATCTCGCCCTCCGTCTCCGTCCCCTCGCCCCGCCGCCGCTCCGCCGGAGAGGTGGCGCTGCTCGCCGTCGTCGTCGTCGCCGCGCTCCTCACCGCCACCACCCATGCCGCGTCCGCAACCATCGAGTCGCGCCCCGCCGACGCCCTGCGGTCGGAGGTCGACGAGCTCAGGCTCAGGGTTCTGCATTTGGAATCTTTGTTGGAGGAAAACACAAAAACTTTGAAGAGTAAAGCAAACAATTTGGAAGAGAACAGCAATCTTATTGGAACTATGGAACATGATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACCCAGAAAGCAATGTGAAAGCTTTGGAAGATGAGGTGCAGCTCCTCTGGAGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCTGAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAACAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCAAAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTAGTCCTTAAGTATTTCAGGAATCTTCATGGCACTTTTCTTATGGGGGTATCATACACAAAGTCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATGAACAGACCCTACCATGAGGTATCACGGTTCTGTAAGGCAATATGTGG-CCAGCATATT-CGCGATGTTGATAAG-CCTAATGTCTTCTTCTTGGGTGGATCCATCTCCCGATCATGTATTTCTGCACCTTATAAACAACTCAAGATTTTCATGTTATTGGCTCAAAATTTTCATCATAAGGTCCAGATATTTCTCCAGGATGCAATGAGATCCAATAGTTACAGTAGAGGTTTCGCAACTGAGA-TAATTACGTTCTGCTTGGCATATTTTGTTGTTATATCTCCAATGTGGATTCTGTGGTTCCTCTATTCAACGCGATTTGGCTCAAAGAAATGACCAGTTG-CCATAAAACAAGAGTTGCATATACTGTTTTCATGTTTTTACATTTTACAAGTATAGAAGAGTTGCATGAGATGGTGGAAAATGCGTATAATTATATCTTGTAATTTATATCGAGCACATTGTATCACATTCCCCATGGAACCTCCCCTTTGCGGGGTGGTGTATTTATACCCCTAGCTCGCTCGCATTCTTCAGGGACTTGGATGGATAAATTTGTCTACTGATTTAGGCAGTCCTAGGTCTTCAAAGAAGAAGCATTTTTTTTTGATCGTTCAAAAATGCATCTTCCTTAAAAA]
[+] EMBL AK102077 [TGGACACCGCCGCGGCGGCGGAGAGCGCAAACCCCCGCCACCCCCCTCGCCGCCCGCCGTAAAACCCTAAAACCATGGCCGCCGCGGCGGAGGCCGTCCTCTTCCTCCTCCACCACCACCTCGCCTTCTTCGGGCTACGCATCTCGCCCTCCGTCTCCGTCCCCTCGCCCCGCCGCCGCTCCGCCGGAGAGGTGGCGCTGCTCGCCGTCGTCGTCGTCGCCGCGCTCCTCACCGCCACCACCCATGCCGCGTCCGCAACCATCGAGTCGCGCCCCGCCGACGCCCTGCGGTCGGAGGTCGACGAGCTCAGGCTCAGGGTTCTGCATTTGGAATCTTTGTTGGAGGAAAACACAAAAACTTTGAAGAGTAAAGCAAACAATTTGGAAGAGAACAGCAATCTTATTGGAACTATGGAACATGATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACCCAGAAAGCAATGTGAAAGCTTTGGAAGATGAGGTGCAGCTCCTCTGGAGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCTGAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAACAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCAAAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTAGTCCTTAAGTATTTCAGGAATCTTCATGGCACTTTTCTTATGGGGGTATCATACACAAAGTCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATGAACAGACCCTACCATGAGGTATCACGGTTCTGTAAGGCAATATGTGG CCAGCATATT CGCGATGTTGATAAG CCTAATGTCTTCTTCTTGGGTGGATCCATCTCCCGATCATGTATTTCTGCACCTTATAAACAACTCAAGATTTTCATGTTATTGGCTCAAAATTTTCATCATAAGGTCCAGATATTTCTCCAGGATGCAATGAGATCCAATAGTTACAGTAGAGGTTTCGCAACTGAGA TAATTACGTTCTGCTTGGCATATTTTGTTGTTATATCTCCAATGTGGATTCTGTGGTTCCTCTATTCAACGCGATTTGGCTCAAAGGAATGACCAGTTG CCATAAAACAAGAGTTGCATATACTGTTTTCATGTTTTTACATTTTACAAGTATAGAAGAGTTGCATGAGATGGTGGAAAATGCGTATAATTATATCTTGTAATTTATATCGAGCACATTGTATCACATTCCCCATGGAACCTCCCCTTTGCGGGGTGGTGTAT ]
[+] EMBL C98634 [ TATGTGGCCCAGCNTATTCCGCGATGTTGATAAGCCCTAATGTCTTCTTCTTGGGTGGATCCATCTCCCGATCATGTATTTCTGCACCTTATAAACAACTCAAGATTTTCATGTTATTGGCTCAAAATTTTCANCATAAGGTCCAGATATTTCTCCAGGATGCAATGAGATCCAATAGTTACAGTAGAGGTTTCGCAACTGAGA TAATTACGTTCTGCTTGGCATATTTTGTTGTTATATCTCCAATGTGGATTCTGTGGTTCCTCTATTCAACGCGATTTGGCTCAAAGAAATGACCAGTTG CCATAAAACAAGAGTTGCATATACTGTTTTCATGTTTTTACATTTTACAAGTATAGAAGAGTTGCATGAGATGGTGGAAAATGCGTATAATTATATCTTGTAATTTATATCGAGCACATTGTATCACATTCCCCATGGAACCTCCCCTTTGCGGGGTGGTGTATTTATACCCCTAGCTCGCTCGCATTCTTCAGGGACTTGGATGGATAAATTTGTCTACTGATTTAGGCAGTCCTAGGTCTTCAAAGAAGAAGCATTTTTTTTTGATCGTTCAAAAATGCATCTTCCTTAAAAA]
[+] EMBL C98603 [ ACTCNNGATTTTCATGTTATTGGCTCAAAATTTTCATCATAAGGTCCAGATATTTCTCCAGGATGCAATGAGATCCAATAGTTACAGTAGAGGTTTCGCAACTGAGATTAATTACGTTCTGCTTGGCATATTTTGTTGTTATATCTCCAATGTGGATTCTGTGGTTCCTCTATTCAACGCGATTTGGCTCAAAGAAATGACCAGTTGCCCATAAAACAAGAGTTGCATATACTGTTTTCATGTTTTTACATTTTACAAGTATAGAAGAGTTGCATGAGATGGTGGAAAATGCGTATAATTATATCTTGTAATTTATATCGAGCACATTGTATCACATTCCCCATGGAACCTCCCCTTTGCGGGGTGGTGTATTTATACCCCTAGCTCGCTCGCATTCTTCAGGGACTTGGATGGATAAATTTGTCTACTGATTTAGGCAGTCCTAGGTCTTCAAAGAAGAAGCATTTTTTTTTGATCGTTCAAAAATGCATCTTCCTTAAAAA]
consensusID : consensus_7772#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 522 fasta sequence
[CTTATTGGAACTATGGAACATGATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACCCAGAAAGCAATGTGAAAGCTTTGGAAGATGAGTGTTCCTGTGCAGGTGCAGCTCCTCTGGAGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCTGAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAACAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCAAAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTAGTCCTTAAGTATTTCAGGAATCTTCATGGCAC-TTTTCTTATGGGGGTATCATACACAAAGTCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATGGAACAGACCCTACCATGAGGTATCACGGT]
[+] EMBL AU165342 [CTTATTGGAACTATGGAACATGATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACCCAGAAAGCAATGTGAAAGCTTTGGAAGATGAGTGTTCCTGTGCAGGTGCAGCTCCTCTGGAGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCTGAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAACAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCAAAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTAGTCCTTAAGTATTTCAGGAATCTTCATGGCAC TTTTCTTATGGGGGTATCATACACAAAGTCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATGGAACAGACCCTACCATGAGGTATCACGGT]
[+] EMBL AU162173 [CTTATTGGAACTATGGAACATGATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACCCAGAAAGCAATGTGAAAGCTTTGGAAGATGAGTGTTCCTGTGCAGGTGCAGCTCCTCTGGAGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCTGAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAACAATGGATCCAAATTCGGCAACTTGAACAGGCATTTTTTTTGACGAAGATGATGACATCAAAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTAGTCCTTAAGTATTTCAGGAATCTTCATGGCACTTTTTCTTATGGGGGTATCATACACA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7772#0 TGGACACCGCCGCGGCGGCGGAGAGCGCAAACCCCCGCCACCCCCCTCGCCGCCCGCCGT 60
consensus_7772#1 ------------------------------------------------------------
consensus_7772#0 AAAACCCTAAAACCATGGCCGCCGCGGCGGAGGCCGTCCTCTTCCTCCTCCACCACCACC 120
consensus_7772#1 ------------------------------------------------------------
consensus_7772#0 TCGCCTTCTTCGGGCTACGCATCTCGCCCTCCGTCTCCGTCCCCTCGCCCCGCCGCCGCT 180
consensus_7772#1 ------------------------------------------------------------
consensus_7772#0 CCGCCGGAGAGGTGGCGCTGCTCGCCGTCGTCGTCGTCGCCGCGCTCCTCACCGCCACCA 240
consensus_7772#1 ------------------------------------------------------------
consensus_7772#0 CCCATGCCGCGTCCGCAACCATCGAGTCGCGCCCCGCCGACGCCCTGCGGTCGGAGGTCG 300
consensus_7772#1 ------------------------------------------------------------
consensus_7772#0 ACGAGCTCAGGCTCAGGGTTCTGCATTTGGAATCTTTGTTGGAGGAAAACACAAAAACTT 360
consensus_7772#1 ------------------------------------------------------------
consensus_7772#0 TGAAGAGTAAAGCAAACAATTTGGAAGAGAACAGCAATCTTATTGGAACTATGGAACATG 420
consensus_7772#1 --------------------------------------CTTATTGGAACTATGGAACATG 22
**********************
consensus_7772#0 ATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACC 480
consensus_7772#1 ATATTGAGATTTTAATGAACAAATATGAGAGTACCAAGAAATCTCAAAGCAAATCCTACC 82
************************************************************
consensus_7772#0 CAGAAAGCAATGTGAAAGCTTTGGAAGATGAG-------------GTGCAGCTCCTCTGG 527
consensus_7772#1 CAGAAAGCAATGTGAAAGCTTTGGAAGATGAGTGTTCCTGTGCAGGTGCAGCTCCTCTGG 142
******************************** ***************
consensus_7772#0 AGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCT 587
consensus_7772#1 AGAGTGGTCAGAAAGATGAATGAGAATGCTGACTCAATAGAATCCCTAGCAAATGGTGCT 202
************************************************************
consensus_7772#0 GAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAA 647
consensus_7772#1 GAGAAAAGGGTTGAATCTCTGAGTTCAGAAGTCAAAAAGATGGAAGGTGTAATTGCAGAA 262
************************************************************
consensus_7772#0 CAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCA 707
consensus_7772#1 CAATGGATCCAAATTCGGCAACTTGAACAGGCATTTGTGTTGACGAAGATGATGACATCA 322
************************************************************
consensus_7772#0 AAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTA 767
consensus_7772#1 AAAGTTCATCAAAGAAGCAGGTTATCCGAGACTGCTTATAAATGGCCTGGAAAAGATTTA 382
************************************************************
consensus_7772#0 GTCCTTAAGTATTTCAGGAATCTTCATGGCACTTTTCTTATGGGGGTATCATACACAAAG 827
consensus_7772#1 GTCCTTAAGTATTTCAGGAATCTTCATGGCACTTTTCTTATGGGGGTATCATACACAAAG 442
************************************************************
consensus_7772#0 TCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATG-AACAGACC 886
consensus_7772#1 TCCTGCTTTTCTCATACATATAAACATGGCAGGAGTTTCATACAAGCAATGGAACAGACC 502
*************************************************** ********
consensus_7772#0 CTACCATGAGGTATCACGGTTCTGTAAGGCAATATGTGGCCAGCATATTCGCGATGTTGA 946
consensus_7772#1 CTACCATGAGGTATCACGGT---------------------------------------- 522
********************
consensus_7772#0 TAAGCCTAATGTCTTCTTCTTGGGTGGATCCATCTCCCGATCATGTATTTCTGCACCTTA 1006
consensus_7772#1 ------------------------------------------------------------
consensus_7772#0 TAAACAACTCAAGATTTTCATGTTATTGGCTCAAAATTTTCATCATAAGGTCCAGATATT 1066
consensus_7772#1 ------------------------------------------------------------
consensus_7772#0 TCTCCAGGATGCAATGAGATCCAATAGTTACAGTAGAGGTTTCGCAACTGAGATAATTAC 1126
consensus_7772#1 ------------------------------------------------------------
consensus_7772#0 GTTCTGCTTGGCATATTTTGTTGTTATATCTCCAATGTGGATTCTGTGGTTCCTCTATTC 1186
consensus_7772#1 ------------------------------------------------------------
consensus_7772#0 AACGCGATTTGGCTCAAAGAAATGACCAGTTGCCATAAAACAAGAGTTGCATATACTGTT 1246
consensus_7772#1 ------------------------------------------------------------
consensus_7772#0 TTCATGTTTTTACATTTTACAAGTATAGAAGAGTTGCATGAGATGGTGGAAAATGCGTAT 1306
consensus_7772#1 ------------------------------------------------------------
consensus_7772#0 AATTATATCTTGTAATTTATATCGAGCACATTGTATCACATTCCCCATGGAACCTCCCCT 1366
consensus_7772#1 ------------------------------------------------------------
consensus_7772#0 TTGCGGGGTGGTGTATTTATACCCCTAGCTCGCTCGCATTCTTCAGGGACTTGGATGGAT 1426
consensus_7772#1 ------------------------------------------------------------
consensus_7772#0 AAATTTGTCTACTGATTTAGGCAGTCCTAGGTCTTCAAAGAAGAAGCATTTTTTTTTGAT 1486
consensus_7772#1 ------------------------------------------------------------
consensus_7772#0 CGTTCAAAAATGCATCTTCCTTAAAAA 1513
consensus_7772#1 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||