These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7773#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1277 fasta sequence [CATCGTGTCATAGGTGTGGTGTGTGGAGAAGCGGTGGACCGACCGACGACGGCGGCAACCCGCACGGCGAGGCGAGGCGAGGCCGACGGCGGCGGCGCGCGTCCACGAAAAGCGGGGGGGTATCTACCTGTTTTTCGTATAAGCCCCTCAAGATCTAGGAAATCGCGGGGCGTGGTCCTCGGCCCGGGGCCTTTAAATGCGGGGGCACCCATGTAGGCCGGAGCAGAGCGCCACGAGGCGAGTTGTTGGGTGTTCCCTAGACTAGCCGTCTCTTCCTCCTCTCCCTCTCCTCCTCCTCCCGCCGCCGCCTGCAACCGCTTCACGTGGCCTGATCCTCCTCCGGAGCTCTCCCTTTCGACCCCAACAAATGGAGCCCAAGAGGTCCCCTGCGCTGCCGCAGCCCAACGTGGAGACCAAGAAGTCCCCTCCCCGCGCTGCCGCCGGAGGAGGCGGCGGCGGCACAGCTGCCGTCGGTGGCGAGTCGCCGTTGAGCAGCCTGTTCCACCAGCCGTCGCATGGGGCAAAAGGCAAAGAAGACATATACTCCATTTTCTACAAAGGGCAGAACGGGACTGCACAAGCTGGGACTGCAGATGGTAAATCCCAGTGGACTCCTCCTAAAAGTCGCACCGTGTACACCAAGGATAACAAACAGTCAAATCAGTATGATTCGGTTGATACGTCCTGTTTTGGTTCTTCTGTGAACTATGGTGGTCGAGACTATTATGGAATCTCTGGACACAAGCAATCCACAGAATCCAATGATTATAAGGCGGACAAAAAGGACACTTCCACAGATTCTCATGGTGACTGGTGGCAAGGTTCGTTTTACTACTAAGCGAACTTGGTGGCCTCTCCCTTGGTGGAAAAGGGAATGGAATGGGA-GGGGTT-GGAGCTGGTTTTGCTTCACTGTTGCTATGCTGGCCGTATCAGTTACCTAAATCATACTAGTGTGACATCGTCCATCAGTGGTGGCAGTATTTGGATCATCACACCTGGGCAGATGTAGTGTGTCTTTACCTTTTCATTTCGTAGCTTGTGCTTTAGATGTGAAATGAATCGAACTTACAAGCACAGTAAGTTTTAGGTCGCAGGTTGCATAAATGGTCCCTATCCATTCTGCCAAATCTGGTCAGTAACCAGATTGGATCAGTTTGGTCTGGCTCTCTTAGATCGAAGTATATGTTCCTTGTACTCTCGGATCTTCGCTCCGGAGCCAAGAAGGCTGGAGAAGTGGAGATCACTTGCATTGTAAACATGTACTCGTTTAATTTCAA] [+] EMBL AK065438 [CATCGTGTCATAGGTGTGGTGTGTGGAGAAGCGGTGGACCGACCGACGACGGCGGCAACCCGCACGGCGAGGCGAGGCGAGGCCGACGGCGGCGGCGCGCGTCCACGAAAAGCGGGGGGGTATCTACCTGTTTTTCGTATAAGCCCCTCAAGATCTAGGAAATCGCGGGGCGTGGTCCTCGGCCCGGGGCCTTTAAATGCGGGGGCACCCATGTAGGCCGGAGCAGAGCGCCACGAGGCGAGTTGTTGGGTGTTCCCTAGACTAGCCGTCTCTTCCTCCTCTCCCTCTCCTCCTCCTCCCGCCGCCGCCTGCAACCGCTTCACGTGGCCTGATCCTCCTCCGGAGCTCTCCCTTTCGACCCCAACAAATGGAGCCCAAGAGGTCCCCTGCGCTGCCGCAGCCCAACGTGGAGACCAAGAAGTCCCCTCCCCGCGCTGCCGCCGGAGGAGGCGGCGGCGGCACAGCTGCCGTCGGTGGCGAGTCGCCGTTGAGCAGCCTGTTCCACCAGCCGTCGCATGGGGCAAAAGGCAAAGAAGACATATACTCCATTTTCTACAAAGGGCAGAACGGGACTGCACAAGCTGGGACTGCAGATGGTAAATCCCAGTGGACTCCTCCTAAAAGTCGCACCGTGTACACCAAGGATAACAAACAGTCAAATCAGTATGATTCGGTTGATACGTCCTGTTTTGGTTCTTCTGTGAACTATGGTGGTCGAGACTATTATGGAATCTCTGGACACAAGCAATCCACAGAATCCAATGATTATAAGGCGGACAAAAAGGACACTTCCACAGATTCTCATGGTGACTGGTGGCAAGGTTCGTTTTACTACTAAGCGAACTTGGTGGCCTCTCCCTTGGTGGAAAAGGGAATGGAATGGGA GGGGTT GGAGCTGGTTTTGCTTCACTGTTGCTATGCTGGCCGTATCAGTTACCTAAATCATACTAGTGTGACATCGTCCATCAGTGGTGGCAGTATTTGGATCATCACACCTGGGCAGATGTAGTGTGTCTTTACCTTTTCATTTCGTAGCTTGTGCTTTAGATGTGAAATGAATCGAACTTACAAGCACAGTAAGTTTTAGGTCGCAGGTTGCATAAATGGTCCCTATCCATTCTGCCAAATCTGGTCAGTAACCAGATTGGATCAGTTTGGTCTGGCTCTCTTAGATCGAAGTATATGTTCCTTGTACTCTCGGATCTTCGCTCCGGAGCCAAGAAGGCTGGAGAAGTGGAGATCACTTGCATTGTAAACATGTACTCGTTTAATTTCAA] [+] EMBL CF324686 [ CCGTCGGTGGCGAGTCGCCGTTGAGCAGCCTGTTCCACCAGCCGTCGCATGGGGCAAAAGGCAAAGAAGACATATACTCCATTTTCTACAAAGGGCAGAACGGGACTGCACAAGCTGGGACTGCAGATGGTAAATCCCAGTGGACTCCTCCTAAAAGTCGCACCGTGTACACCAAGGATAACAAACAGTCAAATCAGTATGATTCGGTTGATACGTCCTGTTTTGGTTCTTCTGTGAACTATGGTGGTCGAGACTATTATGGAATCTCTGGACACAAGCAATCCACAGAATCCAATGATTATAAGGCGGACAAAAAGGACCCTTCCACAGATTCTCATGGTGACTGGTGGCAAGGTTCGTTTTACTACTAAGCGAACTTGGTGGCCTCTCCCTTGGTGGAAAAGGGAATGGAATGGGAGGGGGTTGGGAGCTGGTTTTGCTTCACTGTTGCTATGCTGGCCGTATCAGTTACCTAAATCATACT ] consensusID : consensus_7773#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [ACGAGGCGAGTTGTTGGGTGTTCCCTAGACTAGCCGTCTCTTCCTCCTCTCCCTCTCCTCCTCCTCCCGCCGCCGCCTGCAACCGCTTCACGTGGCCTGATCCTCCTCCGGAGCTCTCCCTTTCGACCCCAACAAATGGAGCCCAAGAGGTCCCCTGCGCTGCCGCAGCCCAACGTGGAGACCAAGAAGTCCCCTCCCCGCGCTGCCGCCGGAGGAGGCGGCGGCGGCACAGCTGCCGTCGGTGGCGAGTCGCCGTTGAGCAGCCTGTTCCACCAGCCGTCGCATGGGGTACTGATTCCTGACGCCTTTTGCATGTTTGATGTTATGCCTGTGTTCAGGCCCGACGTGAATCTTTCCTCCGAACAAGACGAAATTCGAGGGTGTTCTTTCGTTGTTTGTTTGTTTTTTTTGTTTTATTTTTTTTTGTTACGGTGACGCGGATGACACGGGATGAGTCCCCCTCCGTCTGCGAGGCGTTGATACATGCTGAATTTGCCTTTCATTCCATCGCTGTTGCACACGCATAAATTTAGTATG] [+] EMBL CF313833 [ACGAGGCGAGTTGTTGGGTGTTCCCTAGACTAGCCGTCTCTTCCTCCTCTCCCTCTCCTCCTCCTCCCGCCGCCGCCTGCAACCGCTTCACGTGGCCTGATCCTCCTCCGGAGCTCTCCCTTTCGACCCCAACAAATGGAGCCCAAGAGGTCCCCTGCGCTGCCGCAGCCCAACGTGGAGACCAAGAAGTCCCCTCCCCGCGCTGCCGCCGGAGGAGGCGGCGGCGGCACAGCTGCCGTCGGTGGCGAGTCGCCGTTGAGCAGCCTGTTCCACCAGCCGTCGCATGGGGTACTGATTCCTGACGCCTTTTGCATGTTTGATGTTATGCCTGTGTTCAGGCCCGACGTGAATCTTTCCTCCGAACAAGACGAAATTCGAGGGTGTTCTTTCGTTGTTTGTTTGTTTTTTTTGTTTTATTTTTTTTTGTTACGGTGACGCGGATGACACGGGATGAGTCCCCCTCCGTCTGCGAGGCGTTGATACATGCTGAATTTGCCTTTCATTCCATCGCTGTTGCACACGCATAAATTTAGTATG] consensusID : consensus_7773#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [TTTTTTTTTTTTTTATAAACAATCTCTAAGGTTGATTTCCAAAAGTATTCTACAAACTATCGCGTATCCACTTGGAAAGACAGGCGCCTGTACATTGAAAATTACTAATTTTCGCAAATAGAAAGAGGAGGGNGGGGGGGGGCATATCTACTTTAAAAGCTTCCTAAATTTATGCGTGTGCAACAGCGATGGAATGAAAGGCAAATTCACCTTGTTTCAACCCCTCCCAAACGGAGGGGGACTCATCCCGTGTCATCCGCGTCACCGTACCAAAAAAAATTAAACCAAAAAAACCAACCAACCACCGAAAGAACCCCCTCAAATTTCGTCTTGTTCGGAGGAAAAATTCACGTCGGGCCTGAACACAGGCTTAACATCAAAC] [+] EMBL CF313832 [TTTTTTTTTTTTTTATAAACAATCTCTAAGGTTGATTTCCAAAAGTATTCTACAAACTATCGCGTATCCACTTGGAAAGACAGGCGCCTGTACATTGAAAATTACTAATTTTCGCAAATAGAAAGAGGAGGGNGGGGGGGGGCATATCTACTTTAAAAGCTTCCTAAATTTATGCGTGTGCAACAGCGATGGAATGAAAGGCAAATTCACCTTGTTTCAACCCCTCCCAAACGGAGGGGGACTCATCCCGTGTCATCCGCGTCACCGTACCAAAAAAAATTAAACCAAAAAAACCAACCAACCACCGAAAGAACCCCCTCAAATTTCGTCTTGTTCGGAGGAAAAATTCACGTCGGGCCTGAACACAGGCTTAACATCAAAC] consensusID : consensus_7773#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTGACATCGTCCATCAGTGGTGGCAGTATTTGGATCATCACACCTGGGCAGATGTAGTGTGTCTTTACCNNTTTCATTTCGTAGCTTGTGCTTTAGATGTGAAATGAATCGAACTTACAAGCACAGTAAGTTTTAGGTCGCAGGTTGCATAAATGGTCCCTATCCATTCTGCCCAATCTGGTCAGTAACCCGATTGGATCAATTTGGTCTGGCTCTCTTAGATCGAAGTATATGTTCCTTGTACTCTCGGATTTTCGCTCCGGAGCCAAGAAGGCTGGAGAAGTGGAGATCACTTGCATTGTAAACAGTACTCGTTTAATTTCAAAGAACTTAGCCAAA] [+] EMBL BQ906957 [CCGCCCACGCGTCCGCCCACGCGTCCGGTGACATCGTCCATCAGTGGTGGCAGTATTTGGATCATCACACCTGGGCAGATGTAGTGTGTCTTTACCNNTTTCATTTCGTAGCTTGTGCTTTAGATGTGAAATGAATCGAACTTACAAGCACAGTAAGTTTTAGGTCGCAGGTTGCATAAATGGTCCCTATCCATTCTGCCCAATCTGGTCAGTAACCCGATTGGATCAATTTGGTCTGGCTCTCTTAGATCGAAGTATATGTTCCTTGTACTCTCGGATTTTCGCTCCGGAGCCAAGAAGGCTGGAGAAGTGGAGATCACTTGCATTGTAAACAGTACTCGTTTAATTTCAAAGAACTTAGCCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7773#0 CATCGTGTCATAGGTGTGGTGTGTGGAGAAGCGGTGGACCGACCGACGACGGCGGCAACC 60 consensus_7773#3 ------------------------------------------------------------ consensus_7773#1 ------------------------------------------------------------ consensus_7773#2 ------------------------------------------------------------ consensus_7773#0 CGCACGGCGAGGCGAGGCGAGGCCGACGGCGGCGGCGCGCGTCCACGAAAAGCGGGGGGG 120 consensus_7773#3 ------------------------------------------------------------ consensus_7773#1 ------------------------------------------------------------ consensus_7773#2 ------------------------------------------------------------ consensus_7773#0 TATCTACCTGTTTTTCGTATAAGCCCCTCAAGATCTAGGAAATCGCGGGGCGTGGTCCTC 180 consensus_7773#3 ------------------------------------------------------------ consensus_7773#1 ------------------------------------------------------------ consensus_7773#2 ------------------------------------------------------------ consensus_7773#0 GGCCCGGGGCCTTTAAATGCGGGGGCACCCATGTAGGCCGGAGCAGAGCGCCACGAGGCG 240 consensus_7773#3 ------------------------------------------------------------ consensus_7773#1 ------------------------------------------------------------ consensus_7773#2 ------------------------------------------------------------ consensus_7773#0 AGTTGTTGGGTGTTCCCTAGACTAGCCGTCTCTTCCTCCTCTCCCTCTCCTCCTCCTCCC 300 consensus_7773#3 ------------------------------------------------------------ consensus_7773#1 ------------------------------------------------------------ consensus_7773#2 ------------------------------------------------------------ consensus_7773#0 GCCGCCGCCTGCAACCGCTTCACGTGGCCTGATCCTCCTCCGGAGCTCTCCCTTTCGACC 360 consensus_7773#3 ------------------------------------------------------------ consensus_7773#1 ------------------------------------------------------------ consensus_7773#2 ------------------------------------------------------------ consensus_7773#0 CCAACAAATGGAGCCCAAGAGGTCCCCTGCGCTGCCGCAGCCCAACGTGGAGACCAAGAA 420 consensus_7773#3 ------------------------------------------------------------ consensus_7773#1 ------------------------------------------------------------ consensus_7773#2 ------------------------------------------------------------ consensus_7773#0 GTCCCCTCCCCGCGCTGCCGCCGGAGGAGGCGGCGGCGGCACAGCTGCCGTCGGTGGCGA 480 consensus_7773#3 ------------------------------------------------------------ consensus_7773#1 ------------------------------------------------------------ consensus_7773#2 ------------------------------------------------------------ consensus_7773#0 GTCGCCGTTGAGCAGCCTGTTCCACCAGCCGTCGCATGGGGCAAAAGGCAAAGAAGACAT 540 consensus_7773#3 ------------------------------------------------------------ consensus_7773#1 ------------------------------------------------------------ consensus_7773#2 ------------------------------------------------------------ consensus_7773#0 ATACTCCATTTTCTACAAAGGGCAGAACGGGACTGCACAAGCTGGGACTGCAGATGGTAA 600 consensus_7773#3 ------------------------------------------------------------ consensus_7773#1 ------------------------------------------------------------ consensus_7773#2 ------------------------------------------------------------ consensus_7773#0 ATCCCAGTGGACTCCTCCTAAAAGTCGCACCGTGTACACCAAGGATAACAAACAGTCAAA 660 consensus_7773#3 ------------------------------------------------------------ consensus_7773#1 ------------------------------------------------------------ consensus_7773#2 ------------------------------------------------------------ consensus_7773#0 TCAGTATGATTCGGTTGATACGTCCTGTTTTGGTTCTTCTGTGAACTATGGTGGTCGAGA 720 consensus_7773#3 ------------------------------------------------------------ consensus_7773#1 ------------------------------------------------------------ consensus_7773#2 ------------------------------------------------------------ consensus_7773#0 CTATTATGGAATCTCTGGACACAAGCAATCCACAGAATCCAATGATTATAAGGCGGACAA 780 consensus_7773#3 ------------------------------------------------------------ consensus_7773#1 -------ACGAGGCGAGTTGTTGGGTGTTCCCTAGACTAGCCGTCTCTTCCTCCTCTCCC 53 consensus_7773#2 ----------------------TTTTTTTTTTTTTTATAAACAATCTCTAAGGTTGATTT 38 consensus_7773#0 AAAGGACACTTCCACAGATTCTCATGGTGACTGGTGGCAAGGTTCGTTTTACTACTAAGC 840 consensus_7773#3 ------------------------------------------------------------ consensus_7773#1 TCTCCTCCTCCTCCCGCCGCCGCCTGCAACCGCTTCACGTGGCCTGATCCTCCTCCGGAG 113 consensus_7773#2 CCAAAAGTATTCTACAAACTATCGCGTATCCACTTGGAAAGACAGGCGCCTGTACATTGA 98 consensus_7773#0 GAACTTGGTGGCCTCTCCCTTGGTGGAAAAGGGAATGGAATGGGAGGGGTTGGAGCTGGT 900 consensus_7773#3 ------------------------------------------------------------ consensus_7773#1 CTCTCCCTTTCGACCCCAACAAATGGAGCCCAAGAGGTCCCCTGCGCTGCCGCAGCCCAA 173 consensus_7773#2 AAATTACT---AATTTTCGCAAATAGAAAGAGGAGGGNGGGGGGGGGCATATCTACTTTA 155 consensus_7773#0 TTTGCTTCACTGTTGCTATGCTGGCCGTATCAGTTACCTAAATCATACTAGTGTGACATC 960 consensus_7773#3 --------------------CCGCCCACG-CGTCCGCCCA---CGCGTCCG-GTGACATC 35 consensus_7773#1 CGTGGAGACCAAGAAGTCCCCTCCCCGCGCTGCCGCCGGAGGAGGCGGCGGCGGCACAGC 233 consensus_7773#2 AAAGCTTC-CTAAATTTATGC-GTGTGCAACAGCGATGGAATGAAAGGCAAATTCACCTT 213 * * ** consensus_7773#0 GTCCATCAGTGGTGGCAGTATTTGGATCATCACACCTGGGCAGATGTAGTGTGTCTTTAC 1020 consensus_7773#3 GTCCATCAGTGGTGGCAGTATTTGGATCATCACACCTGGGCAGATGTAGTGTGTCTTTAC 95 consensus_7773#1 TGCCGTCGGTGGCGAGTCGCCGTTGAGCAGCCTGTTCCACCAGCCGTCGCATGGGGT-AC 292 consensus_7773#2 GTT--TCAACCCCTCCCAAACGGAGGGGGACTCATCCCG-----TGTCATCCGCGTC-AC 265 ** * * ** * ** consensus_7773#0 CTTTT-CATTTCGTAGCTTGTGCTTTAGATGTGAAATGAATCGAACTTACAAGCACAGTA 1079 consensus_7773#3 CNNTTTCATTTCGTAGCTTGTGCTTTAGATGTGAAATGAATCGAACTTACAAGCACAGTA 155 consensus_7773#1 TGATT-CCTGACGCCTTTTGCATGTTTGATGTTATGC---CTGTGTTCAGGCCCGACGTG 348 consensus_7773#2 CGTAC---CAAAAAAAATTAAACCAAAAAAACCAACC-AACCACCGAAAGAACCCCCTCA 321 ** * * * * consensus_7773#0 AGTTTTAGGTCGCAGGTTGCATAAATGGTCCCTATCCATTCTGCCAAATCTGGTCAGTAA 1139 consensus_7773#3 AGTTTTAGGTCGCAGGTTGCATAAATGGTCCCTATCCATTCTGCCCAATCTGGTCAGTAA 215 consensus_7773#1 AATCTTTCCTC-CGAACAAGACGAA--ATTCGAGGGTGTTCTTTCG---TTGTTTGTTTG 402 consensus_7773#2 AATTTCGTCTT---GTTCGGAGGAAAAATTCACGTCGGGCCTG--AACACAGGCTTAACA 376 * * * * * ** * * ** * consensus_7773#0 CCAGATTGGATCAGTTTGGTCTGGCTCTCTTAGATCGAAGTATATGTTCCTTGTACTCTC 1199 consensus_7773#3 CCCGATTGGATCAATTTGGTCTGGCTCTCTTAGATCGAAGTATATGTTCCTTGTACTCTC 275 consensus_7773#1 TTTTTTTTGTTTTATTTTTTTTTGTTACGGTGACGCGGATGACACGGGATGAGTCCCCCT 462 consensus_7773#2 TCAAAC------------------------------------------------------ 382 consensus_7773#0 GGATCTTCGCTCCGGAGCCAAGAAGGCTGGAGAAGTGGAGATCACTTGCATTGTAAACAT 1259 consensus_7773#3 GGATTTTCGCTCCGGAGCCAAGAAGGCTGGAGAAGTGGAGATCACTTGCATTGTAAACA- 334 consensus_7773#1 CCGT-----CTGCGAGGCGTTGATACATGCTGAATTTGCCTTTCATTCCATCGCTGTT-- 515 consensus_7773#2 ------------------------------------------------------------ consensus_7773#0 GTACTCGTTTAATTTCAA-------------- 1277 consensus_7773#3 GTACTCGTTTAATTTCAAAGAACTTAGCCAAA 366 consensus_7773#1 GCACACGCATAAATTTAGTATG---------- 537 consensus_7773#2 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||