These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7775#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1268 fasta sequence [ACTTTCACACCTCTCTCTCTCTCCTCTCTCTTCTTTCTCTCTCCTCCATTTTCTCTCTCTAGTTCTTGGGATCTTTGAGTGGAAATTCTTGGACATGGACGACGACGGCGACTGGATCACAGCGAGGTACCTCCTCTCGTCGATCCTCGGGCGGAACCCGCTCGTCGTCGATTACGTGGACGAGGAGTCCTTCCCCGTCGAGGACCCTCCCCCGGTGGCCGGTGGCGCCCGTGGAGGGAGGCAAGCGGTGGTGTCGCAGCCGCCGGTGGTGCGCGCGACGGCGGGCGTGGCCGGGACGGTGTGCTCGGTGTGCACGGAGGAGATCGCGGTGGCGGACGCCGTGGTGCGTCTCCCCTGCGCGCACTGGTACCACGCCGGCTGCATCTCCCCGTGGCTCGGAATCCGGAGCACATGCCCCATGTGCCGCGCCGAGCTGCCGGCCAGCGACGACGCCGCCGAGGAAGGCGGTGGTGCCGGCCGGGAGAAGCCGCCGCGCGCGGGCCGCGCCGGGACTAGCGCCGGCGGCGGTGTCAGGCGTGACGCGTCGTATGAGCTCCTCGCCGGCGGCGGCGTCTTGTCTGGCTGAGTCGCTGAGCGTGTGGGCCCAAGGGATTACGCGTCGTTGTTTGGCCGCTCGCGTTTTCGTTTGTACAGAAGAAGAATTGATTAATGAGAAGGGAAAAAAAACATAAATTTTGATCCGAATTTAAACGTTGCTTTAGTTCAGTTACTTAGCTAGTACTAATACTCCTAGTTAGCTTGACGTTGGGGTTGCGAAATCGCAACGAGAAAGAAAAGCGTTACTTGTGAGTGTGCGCGTTGAAATGTTATGCTACGATCGAAAGAAGCGTGCGTCCTGGTGATCAAGTGGGAACCAGATTCCTTCCTAACTATCAATCATTTATTGGTTATTATATCTATAATATAAAGATTGGTTTTCAAATATTCTTGGTTATTCTTCATAGCAAACTATACTAATTAACTCTGCATTTCGTAAAAGCTTTTTCGTACTGGGGTGCATTTTACACATATTTTATTCAGTGCTTGTTAAAATTTTGCCAGACAATAATAATAAAAGATACAAGAAAAAAAATTGGAGTTGAGTAGGTGAGTATATGGGCTTTAATATGTTTAATTCGGCTACTGGGTCCACATTAATTCGAGAAAGAAACGATTGAATTTGAAATATTAGTACAAGAAAATTAAATTAACCGGTGTATATATGCCGTTTAGGACTACTTTAGTAGTCTAAGAGAGTAAAAAAAAAA] [+] EMBL AK061263 [ACTTTCACACCTCTCTCTCTCTCCTCTCTCTTCTTTCTCTCTCCTCCATTTTCTCTCTCTAGTTCTTGGGATCTTTGAGTGGAAATTCTTGGACATGGACGACGACGGCGACTGGATCACAGCGAGGTACCTCCTCTCGTCGATCCTCGGGCGGAACCCGCTCGTCGTCGATTACGTGGACGAGGAGTCCTTCCCCGTCGAGGACCCTCCCCCGGTGGCCGGTGGCGCCCGTGGAGGGAGGCAAGCGGTGGTGTCGCAGCCGCCGGTGGTGCGCGCGACGGCGGGCGTGGCCGGGACGGTGTGCTCGGTGTGCACGGAGGAGATCGCGGTGGCGGACGCCGTGGTGCGTCTCCCCTGCGCGCACTGGTACCACGCCGGCTGCATCTCCCCGTGGCTCGGAATCCGGAGCACATGCCCCATGTGCCGCGCCGAGCTGCCGGCCAGCGACGACGCCGCCGAGGAAGGCGGTGGTGCCGGCCGGGAGAAGCCGCCGCGCGCGGGCCGCGCCGGGACTAGCGCCGGCGGCGGTGTCAGGCGTGACGCGTCGTATGAGCTCCTCGCCGGCGGCGGCGTCTTGTCTGGCTGAGTCGCTGAGCGTGTGGGCCCAAGGGATTACGCGTCGTTGTTTGGCCGCTCGCGTTTTCGTTTGTACAGAAGAAGAATTGATTAATGAGAAGGGAAAAAAAACATAAATTTTGATCCGAATTTAAACGTTGCTTTAGTTCAGTTACTTAGCTAGTACTAATACTCCTAGTTAGCTTGACGTTGGGGTTGCGAAATCGCAACGAGAAAGAAAAGCGTTACTTGTGAGTGTGCGCGTTGAAATGTTATGCTACGATCGAAAGAAGCGTGCGTCCTGGTGATCAAGTGGGAACCAGATTCCTTCCTAACTATCAATCATTTATTGGTTATTATATCTATAATATAAAG ] [+] EMBL CB678951 [ TTTGAGTGGAAATTCTTGGACATGGACGACGACGGCGACTGGATCACAGCGAGGTACCTCCTCTCGTCGATCCTCGGGCGGAACCCGCTCGTCGTCGATTACGTGGACGAGGAGTCCTTCCCCGTCGAGGACCCTCCCCCGGTGGCCGGTGGCGCCCGTGGAGGGAGGCAAGCGGTGGTGTCGCAGCCGCCGGTGGTGCGCGCGACGGCGGGCGTGGCCGGGACGGTGTGCTCGGTGTGCACGGAGGAGATCGCGGTGGCGGACGCCGTGGTGCGTCTCCCCTGCGCGCACTGGTACCACGCCGGCTGCATCTCCCCGTGGCTCGGAATCCGGAGCACATGCCCCATGTGCCGCGCCGAGCTGCCGGCCAGCGACGACGCCGCCGAGGAAGGCGGTGGTGCCGGCCGGGAGAAGCCGCCGCGCGCGGGCCGCGCCGGGACTAGCGCCGGCGGCGGTGTCAGGCGTGACGCGTCGTATGAGCTCCTCGCCGGCGGCGGCGTCTTGTCTGGCTGAGTCGCTGAGCGTGTGGGCCCAAGGGATTACGCGTCGTTGTTTGGCCGCTCGCGTTTTCGTTTGTACAGAAGAAGAATTGATTAATGAGAAGGGAAAAAAAACATAAA ] [+] EMBL BI804595 [ TTAAACGTTGCTTTAGTTCAGTTACTTAGCTAGTACTAATACTCCTAGTTAGCTTGACGTTGGGGTTGCGAAATCGCAACGAGAAAGAAAAGCGTTACTTGTGAGTGTGCGCGTTGAAATGTTATGCTACGATCGAAAGAAGCGTGCGTCCTGGTGATCAAGTGGGAACCAGATTCCTTCCTAACTATCAATCATTTATTGGTTATTATATCTATAATATAAAGATTGGTTTTCAAATATTCTTGGTTATTCTTCATAGCAAACTATACTAATTAACTCTGCATTTCGTAAAAGCTTTTTCGTACTGGGGTGCATTTTACACATATTTTATTCAGTGCTTGTTAAAATTTTGCCAGACAATAATAATAAAAGATACAAGAAAAAAAATTGGAGTTGAGTAGGTGAGTATATGGGCTTTAATATGTTTAATTCGGCTACTGGGTCCACATTAATTCGAGAAAGAAACGATTGAATTTGAAATATTAGTACAAGAAAATTAAATTAACCGGTGTATATATGCCGTTTAGGACTACTTTAGTAGTCTAAGAGAGTAAAAAAAAAA] consensusID : consensus_7775#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [CAGCCGCCGGTGGTGCGCGCGACGGCGGGCGTGGCCGGGACGGTGTGCTCGGTGTGCACGGAGGAGATCGCGGTGGCGGACGCCGTGGTGCGTCTCCCCTGCGCGCACTGGTACCACGCCGGCTGCATCTCCCCGTGGCTCGGAATCCGGAGCACATGCCCCATGTGCCGCGCCGAGCTGCCGGCCAGCGACGACGCCGCCGAGGAAGGCGGTGGTGCCGGCCGGGAGAAGCCGCCGCGCGCGGGCCGCGCCGGGACTAGCGCCGGCGGCGGTGTCAGGCGTGACGCGTCGTATGAGCTCCTCGCCGGCGGCGGCGTCTTGTCTGGCTGAGTCGCTGAGCGTGTGGGCCCAAGGGATTACGCGTCGTTGTTTGGCCGCTCGCGTTTTCGTTTGTACAGAAGAAGAATTGATTAATGAGAAGGGAAAAAAAACATAAATTTTGATCCGAAAAAAAAAAAAAAAAAACTCG] [-] EMBL CF324625 [CAGCCGCCGGTGGTGCGCGCGACGGCGGGCGTGGCCGGGACGGTGTGCTCGGTGTGCACGGAGGAGATCGCGGTGGCGGACGCCGTGGTGCGTCTCCCCTGCGCGCACTGGTACCACGCCGGCTGCATCTCCCCGTGGCTCGGAATCCGGAGCACATGCCCCATGTGCCGCGCCGAGCTGCCGGCCAGCGACGACGCCGCCGAGGAAGGCGGTGGTGCCGGCCGGGAGAAGCCGCCGCGCGCGGGCCGCGCCGGGACTAGCGCCGGCGGCGGTGTCAGGCGTGACGCGTCGTATGAGCTCCTCGCCGGCGGCGGCGTCTTGTCTGGCTGAGTCGCTGAGCGTGTGGGCCCAAGGGATTACGCGTCGTTGTTTGGCCGCTCGCGTTTTCGTTTGTACAGAAGAAGAATTGATTAATGAGAAGGGAAAAAAAACATAAATTTTGATCCGAAAAAAAAAAAAAAAAAACTCG] consensusID : consensus_7775#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [AAATGAGAACTTTGAAGACTGAAGTGGAGAAGGGAAAAAAAACATAAATTTTGATCCGAATTTAAACGTTGCTTTAGTTCAGTTACTTAGCTAGTACTAATACTCCTAGTTAGCTTGACGTTGGGGTTGCGAAATCGCAACGAGAAAGAAAAGCGTTACTTGTGAGTGTGCGCGTTGAAATGTTATGCTACGATCGAAAGAAGCGTGCGTCCTGGTGATCAAGTGGGAACCAGATTCCTTCCTAACTATCAATCATTTATTGGTTATTATATCTATAATATAAAGATTGGTTTTCAAATAAAAAAAAAA] [+] EMBL CA755954 [AAATGAGAACTTTGAAGACTGAAGTGGAGAAGGGAAAAAAAACATAAATTTTGATCCGAATTTAAACGTTGCTTTAGTTCAGTTACTTAGCTAGTACTAATACTCCTAGTTAGCTTGACGTTGGGGTTGCGAAATCGCAACGAGAAAGAAAAGCGTTACTTGTGAGTGTGCGCGTTGAAATGTTATGCTACGATCGAAAGAAGCGTGCGTCCTGGTGATCAAGTGGGAACCAGATTCCTTCCTAACTATCAATCATTTATTGGTTATTATATCTATAATATAAAGATTGGTTTTCAAATAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7775#0 ACTTTCACACCTCTCTCTCTCTCCTCTCTCTTCTTTCTCTCTCCTCCATTTTCTCTCTCT 60 consensus_7775#1 ------------------------------------------------------------ consensus_7775#2 ------------------------------------------------------------ consensus_7775#0 AGTTCTTGGGATCTTTGAGTGGAAATTCTTGGACATGGACGACGACGGCGACTGGATCAC 120 consensus_7775#1 ------------------------------------------------------------ consensus_7775#2 ------------------------------------------------------------ consensus_7775#0 AGCGAGGTACCTCCTCTCGTCGATCCTCGGGCGGAACCCGCTCGTCGTCGATTACGTGGA 180 consensus_7775#1 ------------------------------------------------------------ consensus_7775#2 ------------------------------------------------------------ consensus_7775#0 CGAGGAGTCCTTCCCCGTCGAGGACCCTCCCCCGGTGGCCGGTGGCGCCCGTGGAGGGAG 240 consensus_7775#1 ------------------------------------------------------------ consensus_7775#2 ------------------------------------------------------------ consensus_7775#0 GCAAGCGGTGGTGTCGCAGCCGCCGGTGGTGCGCGCGACGGCGGGCGTGGCCGGGACGGT 300 consensus_7775#1 ----------------CAGCCGCCGGTGGTGCGCGCGACGGCGGGCGTGGCCGGGACGGT 44 consensus_7775#2 ------------------------------------------------------------ consensus_7775#0 GTGCTCGGTGTGCACGGAGGAGATCGCGGTGGCGGACGCCGTGGTGCGTCTCCCCTGCGC 360 consensus_7775#1 GTGCTCGGTGTGCACGGAGGAGATCGCGGTGGCGGACGCCGTGGTGCGTCTCCCCTGCGC 104 consensus_7775#2 ------------------------------------------------------------ consensus_7775#0 GCACTGGTACCACGCCGGCTGCATCTCCCCGTGGCTCGGAATCCGGAGCACATGCCCCAT 420 consensus_7775#1 GCACTGGTACCACGCCGGCTGCATCTCCCCGTGGCTCGGAATCCGGAGCACATGCCCCAT 164 consensus_7775#2 AAATGAGAACTTTGAAGACTGAAGTGGAGAAGGGAAAAAAAACATAAATTTTGATCCGAA 60 * * ** * * *** * ** ** * * ** * consensus_7775#0 GTGCCGCGCCGAGCTGCCGGCCAGCGACGACGCCGCCGAGGAAGGCGGTGGTGCCGGCCG 480 consensus_7775#1 GTGCCGCGCCGAGCTGCCGGCCAGCGACGACGCCGCCGAGGAAGGCGGTGGTGCCGGCCG 224 consensus_7775#2 TTTAAACGTT--GCTTTAGTTCAGTTACTTAGCTAGTACTAATACTCCTAGT--TAGCTT 116 * ** *** * *** ** ** * * ** ** consensus_7775#0 GGAGAAGCCGCCGCGCGCGGGCCGCGCCGGGACTAGCGCCGGCGGCGGTGTCAGGCGTGA 540 consensus_7775#1 GGAGAAGCCGCCGCGCGCGGGCCGCGCCGGGACTAGCGCCGGCGGCGGTGTCAGGCGTGA 284 consensus_7775#2 GACGTTGGGGTTGCG---AAATCGCAACGAGA--AAGAAAAGCGTTACTTGTGAGTGTG- 170 * * * * *** *** ** ** * *** * * *** consensus_7775#0 CGCGTCGTATGAGCTCCTCGCCGGCGGCGGCGTCTTGTCTGGCTGAGTCGCTGAGCGTGT 600 consensus_7775#1 CGCGTCGTATGAGCTCCTCGCCGGCGGCGGCGTCTTGTCTGGCTGAGTCGCTGAGCGTGT 344 consensus_7775#2 CGCGTTGAAATGTTATGCTACGATCGAAAGAAGC--GTGCGTCCTGGTGATCAA--GTGG 226 ***** * * * ** * * ** * * ** * *** consensus_7775#0 GGGCCCAAGGGATTACGCGTCGTTGTTTGGCCGCTCGCGTTTTCGTTTGTACAGAAGAAG 660 consensus_7775#1 GGGCCCAAGGGATTACGCGTCGTTGTTTGGCCGCTCGCGTTTTCGTTTGTACAGAAGAAG 404 consensus_7775#2 GAACCAGATTCCTTCCTAACTATCAATCATTTATTG--GTTATTATATCTATAATATAAA 284 * ** * ** * * * * *** * * * ** * * ** consensus_7775#0 AATTGATTAATGAGAAGGGAAAAAAAACATAAATTTTGATCCGAATTTAAACGTTGCTTT 720 consensus_7775#1 AATTGATTAATGAGAAGGGAAAAAAAACATAAATTTTGATCCGAAAAAAAAAAAAAAAA- 463 consensus_7775#2 GATTGGTTTTCAAATAAAAAAAAAA----------------------------------- 309 **** ** * * ****** consensus_7775#0 AGTTCAGTTACTTAGCTAGTACTAATACTCCTAGTTAGCTTGACGTTGGGGTTGCGAAAT 780 consensus_7775#1 AACTCG------------------------------------------------------ 469 consensus_7775#2 ------------------------------------------------------------ consensus_7775#0 CGCAACGAGAAAGAAAAGCGTTACTTGTGAGTGTGCGCGTTGAAATGTTATGCTACGATC 840 consensus_7775#1 ------------------------------------------------------------ consensus_7775#2 ------------------------------------------------------------ consensus_7775#0 GAAAGAAGCGTGCGTCCTGGTGATCAAGTGGGAACCAGATTCCTTCCTAACTATCAATCA 900 consensus_7775#1 ------------------------------------------------------------ consensus_7775#2 ------------------------------------------------------------ consensus_7775#0 TTTATTGGTTATTATATCTATAATATAAAGATTGGTTTTCAAATATTCTTGGTTATTCTT 960 consensus_7775#1 ------------------------------------------------------------ consensus_7775#2 ------------------------------------------------------------ consensus_7775#0 CATAGCAAACTATACTAATTAACTCTGCATTTCGTAAAAGCTTTTTCGTACTGGGGTGCA 1020 consensus_7775#1 ------------------------------------------------------------ consensus_7775#2 ------------------------------------------------------------ consensus_7775#0 TTTTACACATATTTTATTCAGTGCTTGTTAAAATTTTGCCAGACAATAATAATAAAAGAT 1080 consensus_7775#1 ------------------------------------------------------------ consensus_7775#2 ------------------------------------------------------------ consensus_7775#0 ACAAGAAAAAAAATTGGAGTTGAGTAGGTGAGTATATGGGCTTTAATATGTTTAATTCGG 1140 consensus_7775#1 ------------------------------------------------------------ consensus_7775#2 ------------------------------------------------------------ consensus_7775#0 CTACTGGGTCCACATTAATTCGAGAAAGAAACGATTGAATTTGAAATATTAGTACAAGAA 1200 consensus_7775#1 ------------------------------------------------------------ consensus_7775#2 ------------------------------------------------------------ consensus_7775#0 AATTAAATTAACCGGTGTATATATGCCGTTTAGGACTACTTTAGTAGTCTAAGAGAGTAA 1260 consensus_7775#1 ------------------------------------------------------------ consensus_7775#2 ------------------------------------------------------------ consensus_7775#0 AAAAAAAA 1268 consensus_7775#1 -------- consensus_7775#2 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||