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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7776#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1028 fasta sequence
[TCTTTTTTTTTAAACCAATACTCTGAAAAGGATTATTTGCAATTGACGGAAAAAAGACTGAATTTGCTACAGAATCTGAACGCCTAAAGAGATAGCAAATACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGTGATATACTGGCAAGATTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCATACAATTTACAAGGCTTCTAGTCGATGATGATTTACTACAAATCTTTCAACCACCTTGCCTTCTAAATTTATCAAAAGGGACTCCATCTCAAGAAGGTTGACTATATGCAGGAGGAAACCATCTGAGCTTGTAAGGTCATCAGGGCTGGGATTTCCAATATACAGCATTGAATTGTCTTGAC--GGAAGTAACCACAATGACCTCCCGTGCTAATATATGCATTCACTCCATATTTTGCAAAAATACGCTGAAGAGGCTCATACAACTTTGTTGTTTCCAGTGTGTGCGCCTCAGCACAAACAAAGAATGGATCATATCCAACAACTATTTTCCAGTTACTGCTGGTTGCCGCTATTGATTGCTCTAGCCATTTAATTTGTTCCCTACTAGAAGCTCTTATTTTCCCATCATGAATAGGTTCCTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCACTCTCTTCAGAAAATTACCAATGATCTGTCCATGGGATGATGTAGTGGAATACCAGGGGATCTTCAGAGCCTGGAAGTACAGGGAACCATTTTGCCAAAGTGGGTCTTCCTCCCCTAGCTGAGCAACATCCACCACAAACTTGACTTTATAGGCCTTTGCTATGCTCTCCATCTGCCGTAGGAGGCGGGCCTGCTCGGCGGCCGGCCGCGCGCCGCCGGCGACGCTGAGGAAGGAGACGCCGCCGCGTCCGCCACGACCCAGCGAAGCCTCCACGCCGCCGCCACCGCCGCGGCCCCGATTCCGGTGGAAGCGTGGCTCGCCGAGGCTGAAGGCCGCGTACATCGCGAC]
[+] EMBL CB658991 [TCTTTTTTTTTAAACCAATACTCTGAAAAGGATTATTTGCAATTGACGGAAAAAAGACTGAATTTGCTACAGAATCTGAACGCCTAAAGAGATAGCAAATACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGTGATATACTGGCAAGATTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCATACAATTTACAAGGCTTCTAGTCGATGATGATTTACTACAAATCTTTCAACCACCTTGCCTTCTAAATTTATCAAAAGGGACTCCATCTCAAGAAGGTTGACTATATGCAGGAGGAAACCATCTGAGCTTGTAAGGTCATCAGGGCTGGGATTTCCAATATACAGCATTGAATTGTCTTGAC GGAAGTAACCACAATGACCTCCCGTGCTAATATATGCATTCACTCCATATTTTGCAAAAATACGCTGAAGAGGCTCATACAACTTTGTTGTTTCCAGTGTGTGCGCCTCAGCACAAACAAAGAATGGATCATATCCAACAACTATTTTCCAGTTACTGCTGGTTGCCGCTATTGATTGCTCTAGCCATTTAATTTGTTCCCTACTAGAAGCTCTTATTTTCCCATCATGAATAGGTTCCTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCACTCTCTTCAGAAAATTACCAATGATCTGTCCATGGGATGATGTAGTGGAATACCAGGGGATCTTCAGAGCCTGGAAGTACAGGGAACCATTTTGCCAAAGTGGGTCTTCCTCCCCTAGCTGAGCAACATCCACCACAAACTTGACTTTATAGGCCTT ]
[+] EMBL CB659015 [ AACCAATACTCTGAAAAGGATTATTTGCAATCCTCGGAAAAAAGACTGAATTTGCTACAAAATCTGAACGCCTAAAGAGATAGCAAATACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGTGATATACTGGCAAGATTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCATACAATTTACAAGGCTTCTAGTCGATGATGATTTACTACAAATCTTTCACCCCCCTTGCCTTCTAAATTTATCAAAAGGGACTCCATCTCAAGAAGGTTGACTATATGCAGGAGGAAACCATCTGAGCTTGTAAGGTCATCAGGGCTGGGATTTCCAATATACAGCATTGAATTGTCTTGAC GGAAGTAACCACCATGACCTCCCGTGCTAATATATGCATTCACTCCATATTTTGCAAAAATACGCTGAAGAGGCTCATACAACTTTGTTGTTTCCAGTGTGTGCGCCTCACCACAAACAAAGAATGGATCATATCCAACGACTATTTTCCAGTTACTGCTGGTTGCCGCTATTGATTGCTCTAGCCATTTAATTTGTTCCCTACTAGAAGCTCTTATTTTCCCATCATGAATAGGTTCCTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCACTCTCTTCAGAAAATTACCAATGATCTGTCC ]
[-] EMBL CB658990 [ TATACAGCATTGAA TGTC TGACGGGGAAGTAACCACAATGACCTCCCGTGCTAATATATGCATTCACTCCATATTTTGCAAAAATACGCTGAAGAGGCTCATACAACTTTGTTGTTTCCAGTGTGTGCGCCTCAGCACAAACAAAGAATGGATCATATCCAACAACTATTTTCCAGTTACTGCTGGTTGCCGCTATTGATTGCTCTAGCCATTTAATTTGTTCCCTACTAGAAGCTCTTATTTTCCCATCATGAATAGGTTCCTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCACTCTCTTCAGAAAATTACCAATGATCTGTCCATGGGATGATGTAGTGGAATACCAGGGGATCTTCAGAGCCTGGAAGTACAGGGAACCATTTTGCCAAAGTGGGTCTTCCTCCCCTAGCTGAGCAACATCCACCACAAACTTGACTTTATAGGCCTTTGCTATGCTCTCCATCTGCCGTAGGAGGCGGGCCTGCTCGGCGGCCGGCCGCGCGCCGCCGGCGACGCTGAGGAAGGAGACGCCGCCGCGTCCGCCACGACCCAGCGAAGCCTCCACGCCGCCGCCACCGCCGCGGCCCCGATTCCGGTGGAAGCGTGGCTCGCCGAGGCTGAAGGCCGCGTACATCGCGAC]
[-] EMBL C72517 [ CTAACNATTTAATTTGTCCCCTACTAGAAGCTCTTA TTTCCCATCATGAATAGGTCCTTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCACTCTCTTCAGAAAATTACCAATGATCTGTCCATGGGATGATGTAGTGGAATACCAGGGGATCTTCAGAGCCTGGAAGTACAGGGAACCATTTTGCCAAAGTGGGTCTTCCTCCCCTAGCTGAGCAACATCCACCACAAACTTGACTTTATAGGCCTTTGCTATGCTCTCCATCTGCCGTAGGAGGCGGGCCTGCTCGGCGGCCGGCCGCGC CCGCCGGCGACGCTGAGGAAGGAGACGCCGCCGCGTCCGCCACGACCCAGCGAAGCCTCCACGCCGCCGCCACCGCCGCGGCCCCGATTCCGGTGGAAGCGTGGCTCGCCGAGGC ]
consensusID : consensus_7776#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence
[TTTTTTTTTTTTTTTTTTTGATTGATGATAATNAGTTAATTGCTGTATATATACCAAGCAATACATAATTAGCCAGGNTATACAGTAGTNCCAGCCAGACAAAACTGTGNTAAACCANTACTCTGAAAAGGNTTATTTGCAATTGACGGAAAAAAGACTGANTTTGCTACAGAATCTGAACGCCTAAAGAGNTAGCAANTACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGTGATATACTGGCAAGNTTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCATACAATTTACAAGGCTTCTAGTCGATGATGTTTTACTACAAATCTTTCAACCACCTTGCCTTCTAAATTTA]
[-] EMBL AU033096 [TTTTTTTTTTTTTTTTTTTGATTGATGATAATNAGTTAATTGCTGTATATATACCAAGCAATACATAATTAGCCAGGNTATACAGTAGTNCCAGCCAGACAAAACTGTGNTAAACCANTACTCTGAAAAGGNTTATTTGCAATTGACGGAAAAAAGACTGANTTTGCTACAGAATCTGAACGCCTAAAGAGNTAGCAANTACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGTGATATACTGGCAAGNTTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCATACAATTTACAAGGCTTCTAGTCGATGATGTTTTACTACAAATCTTTCAACCACCTTGCCTTCTAAATTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7776#0 ------------------------------------------------------------
consensus_7776#1 TTTTTTTTTTTTTTTTTTTGATTGATGATAATNAGTTAATTGCTGTATATATACCAAGCA 60
consensus_7776#0 ----------------------------------------TCTTTTTTTTTAAACCAATA 20
consensus_7776#1 ATACATAATTAGCCAGGNTATACAGTAGTNCCAGCCAGACAAAACTGTGNTAAACCANTA 120
* * ******* **
consensus_7776#0 CTCTGAAAAGGATTATTTGCAATTGACGGAAAAAAGACTGAATTTGCTACAGAATCTGAA 80
consensus_7776#1 CTCTGAAAAGGNTTATTTGCAATTGACGGAAAAAAGACTGANTTTGCTACAGAATCTGAA 180
*********** ***************************** ******************
consensus_7776#0 CGCCTAAAGAGATAGCAAATACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGT 140
consensus_7776#1 CGCCTAAAGAGNTAGCAANTACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGT 240
*********** ****** *****************************************
consensus_7776#0 GATATACTGGCAAGATTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCA 200
consensus_7776#1 GATATACTGGCAAGNTTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCA 300
************** *********************************************
consensus_7776#0 TACAATTTACAAGGCTTCTAGTCGATGATGATTTACTACAAATCTTTCAACCACCTTGCC 260
consensus_7776#1 TACAATTTACAAGGCTTCTAGTCGATGATGTTTTACTACAAATCTTTCAACCACCTTGCC 360
****************************** *****************************
consensus_7776#0 TTCTAAATTTATCAAAAGGGACTCCATCTCAAGAAGGTTGACTATATGCAGGAGGAAACC 320
consensus_7776#1 TTCTAAATTTA------------------------------------------------- 371
***********
consensus_7776#0 ATCTGAGCTTGTAAGGTCATCAGGGCTGGGATTTCCAATATACAGCATTGAATTGTCTTG 380
consensus_7776#1 ------------------------------------------------------------
consensus_7776#0 ACGGAAGTAACCACAATGACCTCCCGTGCTAATATATGCATTCACTCCATATTTTGCAAA 440
consensus_7776#1 ------------------------------------------------------------
consensus_7776#0 AATACGCTGAAGAGGCTCATACAACTTTGTTGTTTCCAGTGTGTGCGCCTCAGCACAAAC 500
consensus_7776#1 ------------------------------------------------------------
consensus_7776#0 AAAGAATGGATCATATCCAACAACTATTTTCCAGTTACTGCTGGTTGCCGCTATTGATTG 560
consensus_7776#1 ------------------------------------------------------------
consensus_7776#0 CTCTAGCCATTTAATTTGTTCCCTACTAGAAGCTCTTATTTTCCCATCATGAATAGGTTC 620
consensus_7776#1 ------------------------------------------------------------
consensus_7776#0 CTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCAC 680
consensus_7776#1 ------------------------------------------------------------
consensus_7776#0 TCTCTTCAGAAAATTACCAATGATCTGTCCATGGGATGATGTAGTGGAATACCAGGGGAT 740
consensus_7776#1 ------------------------------------------------------------
consensus_7776#0 CTTCAGAGCCTGGAAGTACAGGGAACCATTTTGCCAAAGTGGGTCTTCCTCCCCTAGCTG 800
consensus_7776#1 ------------------------------------------------------------
consensus_7776#0 AGCAACATCCACCACAAACTTGACTTTATAGGCCTTTGCTATGCTCTCCATCTGCCGTAG 860
consensus_7776#1 ------------------------------------------------------------
consensus_7776#0 GAGGCGGGCCTGCTCGGCGGCCGGCCGCGCGCCGCCGGCGACGCTGAGGAAGGAGACGCC 920
consensus_7776#1 ------------------------------------------------------------
consensus_7776#0 GCCGCGTCCGCCACGACCCAGCGAAGCCTCCACGCCGCCGCCACCGCCGCGGCCCCGATT 980
consensus_7776#1 ------------------------------------------------------------
consensus_7776#0 CCGGTGGAAGCGTGGCTCGCCGAGGCTGAAGGCCGCGTACATCGCGAC 1028
consensus_7776#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||