cluster # 778

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Oryza sativa
cluster # 778 cluster # 778 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_778#0 length = 873 sequences # 1

consensus_778#1 length = 297 sequences # 1

consensusID : consensus_778#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 873
fasta sequence

                              [TCCTCCCTCCACACAGGCGTTCGCCAAGCAAAAACTTCGTACACCACGCATTGCCGCCACCGCCGCGCTCGCCACCACCACCGCCGCCATGAGAACAGCCGCGGTGCTTCTCATGGCGCTCGCGCTCACCCTCGCCGCGGCCGGGACCGGGACCGGGGCCGAGCTCGAGACGGCGGCCATTAGAAGGAGGCAGAGCAGGTTCCTGGCGAGCGCGAAGAACTCGCCGCCGCTGTCGTACTACGACTGCAAGAGGAAGCCGCCGTCGGTGTGCCTGGAGCCGGGGAGCCCCGGGGCGACGTGCTGCAAGGGCGCCTGCGTCGACACCGGCTCCAGCTTCGCGCACTGCGGCAGCTGCAACCACGTCTGCAAGTACGGCGAGACCTGCTGCGGCGGCCACTGCGTCGACCTCCTCAGCGACCGCAAGAACTGCGGCGACTGCTTCGTCCGCTGCCCCAGCAAGAAGTGCAGCTTCGGCCTGTGCGACTACGCCGGCTAACCGGCCGGCGACCGGCGACGACGGCGGCGGCGGCGGCGGCGGCGTGTGCATTCATGTACGTGGCGTGCATGCGATCATCGAGGCAGGAAATGCAATACAAATTCGTTCCTACACATCCATCAGAGAAATAAAAAAAATGGCAGTACGTATATACGACGTGAGTGCATACCTATTATATATATACTCCAAATTGTTTTACAAAATTGCAATTGTTGAGCTCCTGAAACAAGTATACATATACGAAAAAAAAATGATAAAAGTTATACAAATTTAAGGATCTACGGTGCGTCTGTTCGTCTCATTATTTATGTGTTTCTTATTATTGTTGGACTACATATATATAAGTGGTCTTATGGTATCAATAAATCGAAATAATG]

[+] EMBL AK073588             [TCCTCCCTCCACACAGGCGTTCGCCAAGCAAAAACTTCGTACACCACGCATTGCCGCCACCGCCGCGCTCGCCACCACCACCGCCGCCATGAGAACAGCCGCGGTGCTTCTCATGGCGCTCGCGCTCACCCTCGCCGCGGCCGGGACCGGGACCGGGGCCGAGCTCGAGACGGCGGCCATTAGAAGGAGGCAGAGCAGGTTCCTGGCGAGCGCGAAGAACTCGCCGCCGCTGTCGTACTACGACTGCAAGAGGAAGCCGCCGTCGGTGTGCCTGGAGCCGGGGAGCCCCGGGGCGACGTGCTGCAAGGGCGCCTGCGTCGACACCGGCTCCAGCTTCGCGCACTGCGGCAGCTGCAACCACGTCTGCAAGTACGGCGAGACCTGCTGCGGCGGCCACTGCGTCGACCTCCTCAGCGACCGCAAGAACTGCGGCGACTGCTTCGTCCGCTGCCCCAGCAAGAAGTGCAGCTTCGGCCTGTGCGACTACGCCGGCTAACCGGCCGGCGACCGGCGACGACGGCGGCGGCGGCGGCGGCGGCGTGTGCATTCATGTACGTGGCGTGCATGCGATCATCGAGGCAGGAAATGCAATACAAATTCGTTCCTACACATCCATCAGAGAAATAAAAAAAATGGCAGTACGTATATACGACGTGAGTGCATACCTATTATATATATACTCCAAATTGTTTTACAAAATTGCAATTGTTGAGCTCCTGAAACAAGTATACATATACGAAAAAAAAATGATAAAAGTTATACAAATTTAAGGATCTACGGTGCGTCTGTTCGTCTCATTATTTATGTGTTTCTTATTATTGTTGGACTACATATATATAAGTGGTCTTATGGTATCAATAAATCGAAATAATG]




>consensus_778#0
TCCTCCCTCCACACAGGCGTTCGCCAAGCAAAAACTTCGTACACCACGCATTGCCGCCAC
CGCCGCGCTCGCCACCACCACCGCCGCCATGAGAACAGCCGCGGTGCTTCTCATGGCGCT
CGCGCTCACCCTCGCCGCGGCCGGGACCGGGACCGGGGCCGAGCTCGAGACGGCGGCCAT
TAGAAGGAGGCAGAGCAGGTTCCTGGCGAGCGCGAAGAACTCGCCGCCGCTGTCGTACTA
CGACTGCAAGAGGAAGCCGCCGTCGGTGTGCCTGGAGCCGGGGAGCCCCGGGGCGACGTG
CTGCAAGGGCGCCTGCGTCGACACCGGCTCCAGCTTCGCGCACTGCGGCAGCTGCAACCA
CGTCTGCAAGTACGGCGAGACCTGCTGCGGCGGCCACTGCGTCGACCTCCTCAGCGACCG
CAAGAACTGCGGCGACTGCTTCGTCCGCTGCCCCAGCAAGAAGTGCAGCTTCGGCCTGTG
CGACTACGCCGGCTAACCGGCCGGCGACCGGCGACGACGGCGGCGGCGGCGGCGGCGGCG
TGTGCATTCATGTACGTGGCGTGCATGCGATCATCGAGGCAGGAAATGCAATACAAATTC
GTTCCTACACATCCATCAGAGAAATAAAAAAAATGGCAGTACGTATATACGACGTGAGTG
CATACCTATTATATATATACTCCAAATTGTTTTACAAAATTGCAATTGTTGAGCTCCTGA
AACAAGTATACATATACGAAAAAAAAATGATAAAAGTTATACAAATTTAAGGATCTACGG
TGCGTCTGTTCGTCTCATTATTTATGTGTTTCTTATTATTGTTGGACTACATATATATAA
GTGGTCTTATGGTATCAATAAATCGAAATAATG

consensusID : consensus_778#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 297
fasta sequence

                              [CATGCACGCCACGTACATGAATGCACACGCCGCCGCCGCCGCCGCCAACCAGTACCGCACCCGCTCCGTCAGAGAAATAAAAAAAATGGCAGTACGTATATACGACGTGAGTGCATACCTATTATATATATACTCCAAATGTTTTACAAAATTGCAATTGTTGAGCTCCTGAAACAAGTATACATATACGAAAAAAAAATGATAAAAGTTATACAAATTTAAGGATCTACGGTGCGTCTGTTCGTCTCATTATTTATGTGTTTCTTATTATTGTTGGACTACATATATAAGTGGTCT]

[+] EMBL CB238470             [CATGCACGCCACGTACATGAATGCACACGCCGCCGCCGCCGCCGCCAACCAGTACCGCACCCGCTCCGTCAGAGAAATAAAAAAAATGGCAGTACGTATATACGACGTGAGTGCATACCTATTATATATATACTCCAAATGTTTTACAAAATTGCAATTGTTGAGCTCCTGAAACAAGTATACATATACGAAAAAAAAATGATAAAAGTTATACAAATTTAAGGATCTACGGTGCGTCTGTTCGTCTCATTATTTATGTGTTTCTTATTATTGTTGGACTACATATATAAGTGGTCT]




>consensus_778#1
CATGCACGCCACGTACATGAATGCACACGCCGCCGCCGCCGCCGCCAACCAGTACCGCAC
CCGCTCCGTCAGAGAAATAAAAAAAATGGCAGTACGTATATACGACGTGAGTGCATACCT
ATTATATATATACTCCAAATGTTTTACAAAATTGCAATTGTTGAGCTCCTGAAACAAGTA
TACATATACGAAAAAAAAATGATAAAAGTTATACAAATTTAAGGATCTACGGTGCGTCTG
TTCGTCTCATTATTTATGTGTTTCTTATTATTGTTGGACTACATATATAAGTGGTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_778#0      TCCTCCCTCCACACAGGCGTTCGCCAAGCAAAAACTTCGTACACCACGCATTGCCGCCAC 60
consensus_778#1      ------------------------------------------------------------
                                                                                 

consensus_778#0      CGCCGCGCTCGCCACCACCACCGCCGCCATGAGAACAGCCGCGGTGCTTCTCATGGCGCT 120
consensus_778#1      ------------------------------------------------------------
                                                                                 

consensus_778#0      CGCGCTCACCCTCGCCGCGGCCGGGACCGGGACCGGGGCCGAGCTCGAGACGGCGGCCAT 180
consensus_778#1      ------------------------------------------------------------
                                                                                 

consensus_778#0      TAGAAGGAGGCAGAGCAGGTTCCTGGCGAGCGCGAAGAACTCGCCGCCGCTGTCGTACTA 240
consensus_778#1      ------------------------------------------------------------
                                                                                 

consensus_778#0      CGACTGCAAGAGGAAGCCGCCGTCGGTGTGCCTGGAGCCGGGGAGCCCCGGGGCGACGTG 300
consensus_778#1      ------------------------------------------------------------
                                                                                 

consensus_778#0      CTGCAAGGGCGCCTGCGTCGACACCGGCTCCAGCTTCGCGCACTGCGGCAGCTGCAACCA 360
consensus_778#1      ------------------------------------------------------------
                                                                                 

consensus_778#0      CGTCTGCAAGTACGGCGAGACCTGCTGCGGCGGCCACTGCGTCGACCTCCTCAGCGACCG 420
consensus_778#1      ------------------------------------------------------------
                                                                                 

consensus_778#0      CAAGAACTGCGGCGACTGCTTCGTCCGCTGCCCCAGCAAGAAGTGCAGCTTCGGCCTGTG 480
consensus_778#1      ------------------------------------------------------------
                                                                                 

consensus_778#0      CGACTACGCCGGCTAACCGGCCGGCGACCGGCGACGACGGCGGCGGCGGCGGCGGCGGCG 540
consensus_778#1      ----------------------------------------------------------CA 2
                                                                               * 

consensus_778#0      TGTGCATTCATGTACGTGG-CGTGCATGCGATCATCGAGGCAGGAAATGCAATACAAATT 599
consensus_778#1      TGCACGC-CACGTACATGAATGCACACGCCGCCGCCGCCGCCGCCAAC-CAGTAC----- 55
                     **  *   ** **** **   *  ** **   *  **  ** *  **  ** ***     

consensus_778#0      CGTTCCTACACATCCATCAGAGAAATAAAAAAAATGGCAGTACGTATATACGACGTGAGT 659
consensus_778#1      CGCACCCGC---TCCGTCAGAGAAATAAAAAAAATGGCAGTACGTATATACGACGTGAGT 112
                     **  **  *   *** ********************************************

consensus_778#0      GCATACCTATTATATATATACTCCAAATTGTTTTACAAAATTGCAATTGTTGAGCTCCTG 719
consensus_778#1      GCATACCTATTATATATATACTCCAAAT-GTTTTACAAAATTGCAATTGTTGAGCTCCTG 171
                     **************************** *******************************

consensus_778#0      AAACAAGTATACATATACGAAAAAAAAATGATAAAAGTTATACAAATTTAAGGATCTACG 779
consensus_778#1      AAACAAGTATACATATACGAAAAAAAAATGATAAAAGTTATACAAATTTAAGGATCTACG 231
                     ************************************************************

consensus_778#0      GTGCGTCTGTTCGTCTCATTATTTATGTGTTTCTTATTATTGTTGGACTACATATATATA 839
consensus_778#1      GTGCGTCTGTTCGTCTCATTATTTATGTGTTTCTTATTATTGTTGGACTACATATAT--A 289
                     *********************************************************  *

consensus_778#0      AGTGGTCTTATGGTATCAATAAATCGAAATAATG 873
consensus_778#1      AGTGGTCT-------------------------- 297
                     ********