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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7782#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1943 fasta sequence
[TTCCTTGCAAACTTGACAGATCAAGTCCATCATATGACATATTGTTTATGCTAAAAGTTCTAGAGGGGTTGAACCGATACTCTTTTCACCTCGTCTCTGATGAGAGAAACCGTGCTTTTGTACATGGAAGCATAACTGACCTTGATGATCTGAAAGTTGATGTTTCTGTAGTTCCACAGCAGGAGTTTGTCAGTGCTAAATTGACAGATAAACTGGAGCAACAGATGCATGATCCCTTGGTTTTAAGGTCTCGTTGCCTGCCTTTATGGTGCACTGAACTGATGTCTGCATGTCCCTTCTTGTTTTCTTTTGAGGCAAGATGGAAGTATTTCCAGCTGACAGCATTTGGTTCTTTGATCCCACAACATGGGAATATGATGGATACAAGTGGCAGTGGTGTAATGACAGAAAGGGTGCCTTCCTTCTCACGGAAAAAGTTCAAAGTTGATCGCGACAATATACTTGTTTCTGCTGCTAAAGTGATGCAATCACATGCTCGGAGTAATGCAATGCTTGAAGTAGAATATGAAGAGGAAGTAGGCACAGGCTTGGGTCCTACGATGGAATTCTATACATTGATAAGTCATGAGTTTCAGAAGTCTGGTTTAGGCATGTGGAGAGGGGAGCTCTCCGGCGAAGCTGGCCTGGATAATGTTCATGGTGGTTCTGTATTTGTGGTTGCCCCTAATGGACTTTTTCCTAAACCATGGTCCACCCATGTGGATTGTTCTTCCTTCTCAGAAGTGAATAAACAGTTCCACCTCCTTGGTCAGGTCGTTGCAAAGGCAGTTAAAGACAACAGAATTCTCGACATTCCATTTTCTAAAGCATTTTACAGGCTTATACTAGGACAGGAACTTAATATATATGACATTCACTCATTTGATCCTGAACTAGCAATGACCCTTATGGAGTTTAAAGCACTTGCTGCTCGGAGAAAATATTTAGAATCAAGTTCAAGTGGGGACTGCAAGAGTACATCTGATTTGTCTTATCGAGGTTGCAGGATTGAGGATCTTGCTATTGAGTTCGCTCTTCCAGGATATCCAGAATATGTTCTTTCTTTAGAAAATAGCTTGGATAATGTAAGTGCTGACAATTTAGAACAGTATGTTTCTTTTGTTGTTGATGCAACAATTAGAAGTGGAATTGCAAGACAGCTGGAAGCTTTTAAGTCAGGATTCAATGAGGTATTTCCATTAAGCATGCTCCAGGTCTTCTCAGAGGATGAGCTGGAGCGATTACTCTGCGGTGAACAAGATACGTGGGATTTTGCGAAACTTGTGGATCATATAAAGTTTGATCATGGCTACACTTCCAGCAGCCCTCCTGTCATTAATTTGTTGGAGGTTATACAGGAGTTTGAAGGCCATCAACGCAGAGCTTTCTTGCAATTTATAACAGGTTCACCTCGACTCCCACCGGGTGGGTTAGCTGCGCTAAATCCGAAGTTGACGGTTGTCCGAAAGCATAACAGCAACGAGGCTGATGATGACCTTCCGAGTGTGATGACTTGTGCTAATTATCTAAAGTTACCCCCCTATTCTTCCAAGGACAAGATGAGGGAGAAACTACTCTACGCGATTACGGAAGGTCAGGGGTCCTTCCACTTATCTTGACTTGAAACTGATAGCATCTAGCTGCGCATGCCATCACACGCAGTAGAAATGTGTGTTTTGTAAGTATCACGTAGGAAAACATGGTGTAAATGTGGGTGGTTCACTGCTTAACTTACCAAGACATATGATTCGGGTGGAGCTGATGTTAGGAAAGGGAAAAAACTGAGGTGGCGCATGCCCTTCCTTCTCTGTACATAGTGGTAGTTGCCTGTAGGTGTGCTCAAGTAGTCGCGAACATGGCGACTCTCAGCTTAGCTCGCTGCTGTTGATGCAAACCTTCTCTTTTGGTGTAAATATACGTGGCTGGTGAAAATCTTCAATACT]
[+] EMBL AK064382 [TTCCTTGCAAACTTGACAGATCAAGTCCATCATATGACATATTGTTTATGCTAAAAGTTCTAGAGGGGTTGAACCGATACTCTTTTCACCTCGTCTCTGATGAGAGAAACCGTGCTTTTGTACATGGAAGCATAACTGACCTTGATGATCTGAAAGTTGATGTTTCTGTAGTTCCACAGCAGGAGTTTGTCAGTGCTAAATTGACAGATAAACTGGAGCAACAGATGCATGATCCCTTGGTTTTAAGGTCTCGTTGCCTGCCTTTATGGTGCACTGAACTGATGTCTGCATGTCCCTTCTTGTTTTCTTTTGAGGCAAGATGGAAGTATTTCCAGCTGACAGCATTTGGTTCTTTGATCCCACAACATGGGAATATGATGGATACAAGTGGCAGTGGTGTAATGACAGAAAGGGTGCCTTCCTTCTCACGGAAAAAGTTCAAAGTTGATCGCGACAATATACTTGTTTCTGCTGCTAAAGTGATGCAATCACATGCTCGGAGTAATGCAATGCTTGAAGTAGAATATGAAGAGGAAGTAGGCACAGGCTTGGGTCCTACGATGGAATTCTATACATTGATAAGTCATGAGTTTCAGAAGTCTGGTTTAGGCATGTGGAGAGGGGAGCTCTCCGGCGAAGCTGGCCTGGATAATGTTCATGGTGGTTCTGTATTTGTGGTTGCCCCTAATGGACTTTTTCCTAAACCATGGTCCACCCATGTGGATTGTTCTTCCTTCTCAGAAGTGAATAAACAGTTCCACCTCCTTGGTCAGGTCGTTGCAAAGGCAGTTAAAGACAACAGAATTCTCGACATTCCATTTTCTAAAGCATTTTACAGGCTTATACTAGGACAGGAACTTAATATATATGACATTCACTCATTTGATCCTGAACTAGCAATGACCCTTATGGAGTTTAAAGCACTTGCTGCTCGGAGAAAATATTTAGAATCAAGTTCAAGTGGGGACTGCAAGAGTACATCTGATTTGTCTTATCGAGGTTGCAGGATTGAGGATCTTGCTATTGAGTTCGCTCTTCCAGGATATCCAGAATATGTTCTTTCTTTAGAAAATAGCTTGGATAATGTAAGTGCTGACAATTTAGAACAGTATGTTTCTTTTGTTGTTGATGCAACAATTAGAAGTGGAATTGCAAGACAGCTGGAAGCTTTTAAGTCAGGATTCAATGAGGTATTTCCATTAAGCATGCTCCAGGTCTTCTCAGAGGATGAGCTGGAGCGATTACTCTGCGGTGAACAAGATACGTGGGATTTTGCGAAACTTGTGGATCATATAAAGTTTGATCATGGCTACACTTCCAGCAGCCCTCCTGTCATTAATTTGTTGGAGGTTATACAGGAGTTTGAAGGCCATCAACGCAGAGCTTTCTTGCAATTTATAACAGGTTCACCTCGACTCCCACCGGGTGGGTTAGCTGCGCTAAATCCGAAGTTGACGGTTGTCCGAAAGCATAACAGCAACGAGGCTGATGATGACCTTCCGAGTGTGATGACTTGTGCTAATTATCTAAAGTTACCCCCCTATTCTTCCAAGGACAAGATGAGGGAGAAACTACTCTACGCGATTACGGAAGGTCAGGGGTCCTTCCACTTATCTTGACTTGAAACTGATAGCATCTAGCTGCGCATGCCATCACACGCAGTAGAAATGTGTGTTTTGTAAGTATCACGTAGGAAAACATGGTGTAAATGTGGGTGGTTCACTGCTTAACTTACCAAGACATATGATTCGGGTGGAGCTGATGTTAGGAAAGGGAAAAAACTGAGGTGGCGCATGCCCTTCCTTCTCTGTACATAGTGGTAGTTGCCTGTAGGTGTGCTCAAGTAGTCGCGAACATGGCGACTCTCAGCTTAGCTCGCTGCTGTTGATGCAAACCTTCTCTTTTGGTGTAAATATACGTGGCTGGTGAAAATCTTCAATAC ]
[+] EMBL CB665977 [ GGTTTACGCTTGTGGAGAGGGGAGCTCTCCGGCGAAGCTGGCCTGGATAATGTTCATGGTGGTTCTGTATTTGTGGTTGCCCCTAATGGACTTTTTCCTAAACCATGGTCCACCCATGTGGATTGTTCTTCCTTCTCAGAAGTGAATAAACAGTTCCACCTCCTTGGTCAGGTCGTTGCAAAGGCAGTTAAAGACAACAGAATTCTCGACATTCCATTTTCTAAAGCATTTTACAGGCTTATACTAGGACAGGAACTTAATATATATGACATTCACTCATTTGATCCTGAACTAGCAATGACCCTTATGGAGTTTAAAGCACTTGCTGCTCGGAGAAAATATTTAGAATCAAGTTCAAGTGGGGACTGCAAGAGTACATCTGATTTGTCTTATCGAGGTTGCAGGATTGAGGATCTTGCTATTGAGTTCGCTCTTCCAGGATATCCAGAATATGTTCTTTCTTTAGAAAATAGCTTGGATAATGTAAGTGCTGACAATTTAGAACAGTATGTTTCTTTTGTTGTTGATGCAACAATTAGAAGTGGAATTGCAAGACAGCTGGAAGCTTTTAAGTCAGGATTCAATGAGGTATTTCCATTAAGCATGCTCCAGGTCTTCTCAGAGGATGAGCTGGAGCGATTACTCTGCGGTGAACAAGATACGTGGGATTTTGCGAAACTTGTGGATCATATAAAGTTTGATCATGGCTACACTTCCAGCAGCCCTCCTGTCATTAATTTGTTGGAGGTTATACAGGAGTTTGAAAGCCATCAACGCAGAGCTTTCTTGCAATTTATAAC ]
[-] EMBL CB665978 [ ATGCAACAATTAGAAGTGGAATTGCAAGACAGCTGGAAGCTTTTAAGTCAGGATTCAATGAGGTATTTCCATTAAGCATGCTCCAGGTCTTCTCAGAGGATGAGCTGGAGCGATTACTCTGCGGTGAACAAGATACGTGGGATTTTGCGAAACTTGTGGATCATATAAAGTTTGATCATGGNTACACTTCCAGCAGCCCTCCTGTCATTAATTTGTTGGAGGTTATACAGGAGTTTGAAGGCCATCAACGCAGAGCTTTCTTGCAATTTATAACAGGTTCACCTCGACTCCCACCGGGTGGGTTAGCTGCGCTAAATCCGAAGTTGACGGTTGTCCGAAAGCATAACAGCAACGAGGCTGATGATGACCTTCCGAGTGTGATGACTTGTGCTAATTATCTAAAGTTACCCCCCTATTCTTCCAAGGACAAGATGAGGGAGAAACTACTCTACGCGATTACGGAAGGTCAGGGGTCCTTCCACTTATCTTGACTTGAAACTGATAGCATCTAGCTGCGCATGCCATCACACGCAGTAGAAATGTGTGTTTTGTAAGTATCACGTAGGAAAACATGGTGTAAATGTGGGTGGTTCACTGCTTAACTTACCAAGACATATGATTCGGGTGGAGCTGATGTTAGGAAAGGGAAAAAACTGAGGTGGCGCATGCCCTTCCTTCTCTGTACATAGTGGTAGTTGCCTGTAGGTGTGCTCAAGTAGTCGCGAACATGGCGACTCTCAGCTTAGCTCGCTGCTGTTGATGCAAACCTTCTCTTTTGGTGTAAATATACGTGGCTGGTGAAAATCTTCAATACT]
consensusID : consensus_7782#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 545 fasta sequence
[GCTTTCTTGCAATTTATAACAGGCTCACCTCGACTCCCACCGGGTGGGTTAGCTGCGCTAAATCCGAAGTTGACGGTTGTCCGAAAGCAGCATAACAGCAACGAGGCTGATGATGACCTTCCGAGCGTGATGACTTGTGCTAATTATCTAAAGTTACCCCCCTATTCTTCCAAGGACAAGATGA-GGGAGAAACTACTCTACGCGATTACAGAAGGTCAGGGGTCCTTCCACTTATCTTGACTTGAAACTGATAACATCTAACTGCGCATGCCATCACACGCAGTAAAAATTTGTGTGTCTTGTAAAGTATCACGTACGAAAACATGGTGTAAATGTGGGTGGTTCACTGCTTAACTTACCATGACATATGATTCAGGTGGAGCTGATGTTAAGAAAGGGAAAAAACTGAAGTGGCACATGCCCTTCCTTCTCTGTACCTCAGCCACAACCACACTAATCACTAATGAATTCACAGCCACCTGCAAGTCACCATATGGTAAAAACTCCCAACACATTGAATCCATAACTTGAATATCCTATAATAG]
[+] EMBL BI118805 [GCTTTCTTGCAATTTATAACAGGCTCACCTCGACTCCCACCGGGTGGGTTAGCTGCGCTAAATCCGAAGTTGACGGTTGTCCGAAAGCAGCATAACAGCAACGAGGCTGATGATGACCTTCCGAGCGTGATGACTTGTGCTAATTATCTAAAGTTACCCCCCTATTCTTCCAAGGACAAGATGA GGGAGAAACTACTCTACGCGATTACAGAAGGTCAGGGGTCCTTCCACTTATCTTGACTTGAAACTGATAACATCTAACTGCGCATGCCATCACACGCAGTAAAAATTTGTGTGTCTTGTAAAGTATCACGTACGAAAACATGGTGTAAATGTGGGTGGTTCACTGCTTAACTTACCATGACATATGATTCAGGTGGAGCTGATGTTAAGAAAGGGAAAAAACTGAAGTGGCACATGCCCTTCCTTCTCTGTACCTCAGCCACAACCACACTAATCACTAATGAATTCACAGCCACCTGCAAGTCACCATATGGTAAAAACTCCCAACACATTGAATCCATAACTTGAATATCCTATAATAG]
[+] EMBL BI118798 [GCTTTCTTGCAATTTATAACAGGCTCACCTCGACTCCCACCGGGTGGGTTAGCTGCGCTAAATCCGAAGTTGACGGTTGTCCGAAAGCAGCATAACAGCAACGAGGCTGATGATGACCTTCCGAGCGTGATGACTTGTGCTAATTATCTAAAGTTACCCCCCTATTCTTCCAAGGACAAGATGAGGGGAGAAACTACTCTACGCGATTACGGAAGGTCAGGGGTCCTTCCACTTATCTTGACTTGAAACTGATAGCATCTAGCTGCGCATGCCATCACACGCAGTAGAAATTTGTGTGTTTTGTAAAGTATCACGTAGGAAAACATGGTGTAAATGTGGGTGG TCACTGCTTAACTTACCATGACATATGATTCGGGTGGAGCTGATGTTAGGAAAGGGAAAAAACTGAGGTGGCGCATGCCCTTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7782#0 TTCCTTGCAAACTTGACAGATCAAGTCCATCATATGACATATTGTTTATGCTAAAAGTTC 60
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 TAGAGGGGTTGAACCGATACTCTTTTCACCTCGTCTCTGATGAGAGAAACCGTGCTTTTG 120
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 TACATGGAAGCATAACTGACCTTGATGATCTGAAAGTTGATGTTTCTGTAGTTCCACAGC 180
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 AGGAGTTTGTCAGTGCTAAATTGACAGATAAACTGGAGCAACAGATGCATGATCCCTTGG 240
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 TTTTAAGGTCTCGTTGCCTGCCTTTATGGTGCACTGAACTGATGTCTGCATGTCCCTTCT 300
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 TGTTTTCTTTTGAGGCAAGATGGAAGTATTTCCAGCTGACAGCATTTGGTTCTTTGATCC 360
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 CACAACATGGGAATATGATGGATACAAGTGGCAGTGGTGTAATGACAGAAAGGGTGCCTT 420
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 CCTTCTCACGGAAAAAGTTCAAAGTTGATCGCGACAATATACTTGTTTCTGCTGCTAAAG 480
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 TGATGCAATCACATGCTCGGAGTAATGCAATGCTTGAAGTAGAATATGAAGAGGAAGTAG 540
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 GCACAGGCTTGGGTCCTACGATGGAATTCTATACATTGATAAGTCATGAGTTTCAGAAGT 600
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 CTGGTTTAGGCATGTGGAGAGGGGAGCTCTCCGGCGAAGCTGGCCTGGATAATGTTCATG 660
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 GTGGTTCTGTATTTGTGGTTGCCCCTAATGGACTTTTTCCTAAACCATGGTCCACCCATG 720
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 TGGATTGTTCTTCCTTCTCAGAAGTGAATAAACAGTTCCACCTCCTTGGTCAGGTCGTTG 780
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 CAAAGGCAGTTAAAGACAACAGAATTCTCGACATTCCATTTTCTAAAGCATTTTACAGGC 840
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 TTATACTAGGACAGGAACTTAATATATATGACATTCACTCATTTGATCCTGAACTAGCAA 900
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 TGACCCTTATGGAGTTTAAAGCACTTGCTGCTCGGAGAAAATATTTAGAATCAAGTTCAA 960
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 GTGGGGACTGCAAGAGTACATCTGATTTGTCTTATCGAGGTTGCAGGATTGAGGATCTTG 1020
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 CTATTGAGTTCGCTCTTCCAGGATATCCAGAATATGTTCTTTCTTTAGAAAATAGCTTGG 1080
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 ATAATGTAAGTGCTGACAATTTAGAACAGTATGTTTCTTTTGTTGTTGATGCAACAATTA 1140
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 GAAGTGGAATTGCAAGACAGCTGGAAGCTTTTAAGTCAGGATTCAATGAGGTATTTCCAT 1200
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 TAAGCATGCTCCAGGTCTTCTCAGAGGATGAGCTGGAGCGATTACTCTGCGGTGAACAAG 1260
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 ATACGTGGGATTTTGCGAAACTTGTGGATCATATAAAGTTTGATCATGGCTACACTTCCA 1320
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 GCAGCCCTCCTGTCATTAATTTGTTGGAGGTTATACAGGAGTTTGAAGGCCATCAACGCA 1380
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 GAGCTTTCTTGCAATTTATAACAGGTTCACCTCGACTCCCACCGGGTGGGTTAGCTGCGC 1440
consensus_7782#1 --GCTTTCTTGCAATTTATAACAGGCTCACCTCGACTCCCACCGGGTGGGTTAGCTGCGC 58
*********************** **********************************
consensus_7782#0 TAAATCCGAAGTTGACGGTTGTCCGAAAGCA---TAACAGCAACGAGGCTGATGATGACC 1497
consensus_7782#1 TAAATCCGAAGTTGACGGTTGTCCGAAAGCAGCATAACAGCAACGAGGCTGATGATGACC 118
******************************* **************************
consensus_7782#0 TTCCGAGTGTGATGACTTGTGCTAATTATCTAAAGTTACCCCCCTATTCTTCCAAGGACA 1557
consensus_7782#1 TTCCGAGCGTGATGACTTGTGCTAATTATCTAAAGTTACCCCCCTATTCTTCCAAGGACA 178
******* ****************************************************
consensus_7782#0 AGATGAGGGAGAAACTACTCTACGCGATTACGGAAGGTCAGGGGTCCTTCCACTTATCTT 1617
consensus_7782#1 AGATGAGGGAGAAACTACTCTACGCGATTACAGAAGGTCAGGGGTCCTTCCACTTATCTT 238
******************************* ****************************
consensus_7782#0 GACTTGAAACTGATAGCATCTAGCTGCGCATGCCATCACACGCAGTAGAAAT--GTGTGT 1675
consensus_7782#1 GACTTGAAACTGATAACATCTAACTGCGCATGCCATCACACGCAGTAAAAATTTGTGTGT 298
*************** ****** ************************ **** ******
consensus_7782#0 TTTGTAA-GTATCACGTAGGAAAACATGGTGTAAATGTGGGTGGTTCACTGCTTAACTTA 1734
consensus_7782#1 CTTGTAAAGTATCACGTACGAAAACATGGTGTAAATGTGGGTGGTTCACTGCTTAACTTA 358
****** ********** *****************************************
consensus_7782#0 CCAAGACATATGATTCGGGTGGAGCTGATGTTAGGAAAGGGAAAAAACTGAGGTGGCGCA 1794
consensus_7782#1 CCATGACATATGATTCAGGTGGAGCTGATGTTAAGAAAGGGAAAAAACTGAAGTGGCACA 418
*** ************ **************** ***************** ***** **
consensus_7782#0 TGCCCTTCCTTCTCTGTACAT-AGTGGTAGTTGCCTGTAGGTGTGCTCAAGTAGTCGCGA 1853
consensus_7782#1 TGCCCTTCCTTCTCTGTACCTCAGCCACAACCACACTAAT---CACTAATGAATTCACAG 475
******************* * ** * * * ** * * * ** *
consensus_7782#0 ACATG-GCGACTCTCAGCTTAGCTCGCTGCTGTTGATGCAAACCTTCTCTTTTGGTGTAA 1912
consensus_7782#1 CCACCTGCAAGTCACCATATGG-TAAAAACTCCCAACACA---TTGAATCCATAACTTGA 531
** ** * ** * * * * ** * ** * * * *
consensus_7782#0 ATATACGTGGCTGGTGAAAATCTTCAATACT 1943
consensus_7782#1 ATATCCTATAATAG----------------- 545
**** * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||