These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7782#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1943 fasta sequence [TTCCTTGCAAACTTGACAGATCAAGTCCATCATATGACATATTGTTTATGCTAAAAGTTCTAGAGGGGTTGAACCGATACTCTTTTCACCTCGTCTCTGATGAGAGAAACCGTGCTTTTGTACATGGAAGCATAACTGACCTTGATGATCTGAAAGTTGATGTTTCTGTAGTTCCACAGCAGGAGTTTGTCAGTGCTAAATTGACAGATAAACTGGAGCAACAGATGCATGATCCCTTGGTTTTAAGGTCTCGTTGCCTGCCTTTATGGTGCACTGAACTGATGTCTGCATGTCCCTTCTTGTTTTCTTTTGAGGCAAGATGGAAGTATTTCCAGCTGACAGCATTTGGTTCTTTGATCCCACAACATGGGAATATGATGGATACAAGTGGCAGTGGTGTAATGACAGAAAGGGTGCCTTCCTTCTCACGGAAAAAGTTCAAAGTTGATCGCGACAATATACTTGTTTCTGCTGCTAAAGTGATGCAATCACATGCTCGGAGTAATGCAATGCTTGAAGTAGAATATGAAGAGGAAGTAGGCACAGGCTTGGGTCCTACGATGGAATTCTATACATTGATAAGTCATGAGTTTCAGAAGTCTGGTTTAGGCATGTGGAGAGGGGAGCTCTCCGGCGAAGCTGGCCTGGATAATGTTCATGGTGGTTCTGTATTTGTGGTTGCCCCTAATGGACTTTTTCCTAAACCATGGTCCACCCATGTGGATTGTTCTTCCTTCTCAGAAGTGAATAAACAGTTCCACCTCCTTGGTCAGGTCGTTGCAAAGGCAGTTAAAGACAACAGAATTCTCGACATTCCATTTTCTAAAGCATTTTACAGGCTTATACTAGGACAGGAACTTAATATATATGACATTCACTCATTTGATCCTGAACTAGCAATGACCCTTATGGAGTTTAAAGCACTTGCTGCTCGGAGAAAATATTTAGAATCAAGTTCAAGTGGGGACTGCAAGAGTACATCTGATTTGTCTTATCGAGGTTGCAGGATTGAGGATCTTGCTATTGAGTTCGCTCTTCCAGGATATCCAGAATATGTTCTTTCTTTAGAAAATAGCTTGGATAATGTAAGTGCTGACAATTTAGAACAGTATGTTTCTTTTGTTGTTGATGCAACAATTAGAAGTGGAATTGCAAGACAGCTGGAAGCTTTTAAGTCAGGATTCAATGAGGTATTTCCATTAAGCATGCTCCAGGTCTTCTCAGAGGATGAGCTGGAGCGATTACTCTGCGGTGAACAAGATACGTGGGATTTTGCGAAACTTGTGGATCATATAAAGTTTGATCATGGCTACACTTCCAGCAGCCCTCCTGTCATTAATTTGTTGGAGGTTATACAGGAGTTTGAAGGCCATCAACGCAGAGCTTTCTTGCAATTTATAACAGGTTCACCTCGACTCCCACCGGGTGGGTTAGCTGCGCTAAATCCGAAGTTGACGGTTGTCCGAAAGCATAACAGCAACGAGGCTGATGATGACCTTCCGAGTGTGATGACTTGTGCTAATTATCTAAAGTTACCCCCCTATTCTTCCAAGGACAAGATGAGGGAGAAACTACTCTACGCGATTACGGAAGGTCAGGGGTCCTTCCACTTATCTTGACTTGAAACTGATAGCATCTAGCTGCGCATGCCATCACACGCAGTAGAAATGTGTGTTTTGTAAGTATCACGTAGGAAAACATGGTGTAAATGTGGGTGGTTCACTGCTTAACTTACCAAGACATATGATTCGGGTGGAGCTGATGTTAGGAAAGGGAAAAAACTGAGGTGGCGCATGCCCTTCCTTCTCTGTACATAGTGGTAGTTGCCTGTAGGTGTGCTCAAGTAGTCGCGAACATGGCGACTCTCAGCTTAGCTCGCTGCTGTTGATGCAAACCTTCTCTTTTGGTGTAAATATACGTGGCTGGTGAAAATCTTCAATACT] [+] EMBL AK064382 [TTCCTTGCAAACTTGACAGATCAAGTCCATCATATGACATATTGTTTATGCTAAAAGTTCTAGAGGGGTTGAACCGATACTCTTTTCACCTCGTCTCTGATGAGAGAAACCGTGCTTTTGTACATGGAAGCATAACTGACCTTGATGATCTGAAAGTTGATGTTTCTGTAGTTCCACAGCAGGAGTTTGTCAGTGCTAAATTGACAGATAAACTGGAGCAACAGATGCATGATCCCTTGGTTTTAAGGTCTCGTTGCCTGCCTTTATGGTGCACTGAACTGATGTCTGCATGTCCCTTCTTGTTTTCTTTTGAGGCAAGATGGAAGTATTTCCAGCTGACAGCATTTGGTTCTTTGATCCCACAACATGGGAATATGATGGATACAAGTGGCAGTGGTGTAATGACAGAAAGGGTGCCTTCCTTCTCACGGAAAAAGTTCAAAGTTGATCGCGACAATATACTTGTTTCTGCTGCTAAAGTGATGCAATCACATGCTCGGAGTAATGCAATGCTTGAAGTAGAATATGAAGAGGAAGTAGGCACAGGCTTGGGTCCTACGATGGAATTCTATACATTGATAAGTCATGAGTTTCAGAAGTCTGGTTTAGGCATGTGGAGAGGGGAGCTCTCCGGCGAAGCTGGCCTGGATAATGTTCATGGTGGTTCTGTATTTGTGGTTGCCCCTAATGGACTTTTTCCTAAACCATGGTCCACCCATGTGGATTGTTCTTCCTTCTCAGAAGTGAATAAACAGTTCCACCTCCTTGGTCAGGTCGTTGCAAAGGCAGTTAAAGACAACAGAATTCTCGACATTCCATTTTCTAAAGCATTTTACAGGCTTATACTAGGACAGGAACTTAATATATATGACATTCACTCATTTGATCCTGAACTAGCAATGACCCTTATGGAGTTTAAAGCACTTGCTGCTCGGAGAAAATATTTAGAATCAAGTTCAAGTGGGGACTGCAAGAGTACATCTGATTTGTCTTATCGAGGTTGCAGGATTGAGGATCTTGCTATTGAGTTCGCTCTTCCAGGATATCCAGAATATGTTCTTTCTTTAGAAAATAGCTTGGATAATGTAAGTGCTGACAATTTAGAACAGTATGTTTCTTTTGTTGTTGATGCAACAATTAGAAGTGGAATTGCAAGACAGCTGGAAGCTTTTAAGTCAGGATTCAATGAGGTATTTCCATTAAGCATGCTCCAGGTCTTCTCAGAGGATGAGCTGGAGCGATTACTCTGCGGTGAACAAGATACGTGGGATTTTGCGAAACTTGTGGATCATATAAAGTTTGATCATGGCTACACTTCCAGCAGCCCTCCTGTCATTAATTTGTTGGAGGTTATACAGGAGTTTGAAGGCCATCAACGCAGAGCTTTCTTGCAATTTATAACAGGTTCACCTCGACTCCCACCGGGTGGGTTAGCTGCGCTAAATCCGAAGTTGACGGTTGTCCGAAAGCATAACAGCAACGAGGCTGATGATGACCTTCCGAGTGTGATGACTTGTGCTAATTATCTAAAGTTACCCCCCTATTCTTCCAAGGACAAGATGAGGGAGAAACTACTCTACGCGATTACGGAAGGTCAGGGGTCCTTCCACTTATCTTGACTTGAAACTGATAGCATCTAGCTGCGCATGCCATCACACGCAGTAGAAATGTGTGTTTTGTAAGTATCACGTAGGAAAACATGGTGTAAATGTGGGTGGTTCACTGCTTAACTTACCAAGACATATGATTCGGGTGGAGCTGATGTTAGGAAAGGGAAAAAACTGAGGTGGCGCATGCCCTTCCTTCTCTGTACATAGTGGTAGTTGCCTGTAGGTGTGCTCAAGTAGTCGCGAACATGGCGACTCTCAGCTTAGCTCGCTGCTGTTGATGCAAACCTTCTCTTTTGGTGTAAATATACGTGGCTGGTGAAAATCTTCAATAC ] [+] EMBL CB665977 [ GGTTTACGCTTGTGGAGAGGGGAGCTCTCCGGCGAAGCTGGCCTGGATAATGTTCATGGTGGTTCTGTATTTGTGGTTGCCCCTAATGGACTTTTTCCTAAACCATGGTCCACCCATGTGGATTGTTCTTCCTTCTCAGAAGTGAATAAACAGTTCCACCTCCTTGGTCAGGTCGTTGCAAAGGCAGTTAAAGACAACAGAATTCTCGACATTCCATTTTCTAAAGCATTTTACAGGCTTATACTAGGACAGGAACTTAATATATATGACATTCACTCATTTGATCCTGAACTAGCAATGACCCTTATGGAGTTTAAAGCACTTGCTGCTCGGAGAAAATATTTAGAATCAAGTTCAAGTGGGGACTGCAAGAGTACATCTGATTTGTCTTATCGAGGTTGCAGGATTGAGGATCTTGCTATTGAGTTCGCTCTTCCAGGATATCCAGAATATGTTCTTTCTTTAGAAAATAGCTTGGATAATGTAAGTGCTGACAATTTAGAACAGTATGTTTCTTTTGTTGTTGATGCAACAATTAGAAGTGGAATTGCAAGACAGCTGGAAGCTTTTAAGTCAGGATTCAATGAGGTATTTCCATTAAGCATGCTCCAGGTCTTCTCAGAGGATGAGCTGGAGCGATTACTCTGCGGTGAACAAGATACGTGGGATTTTGCGAAACTTGTGGATCATATAAAGTTTGATCATGGCTACACTTCCAGCAGCCCTCCTGTCATTAATTTGTTGGAGGTTATACAGGAGTTTGAAAGCCATCAACGCAGAGCTTTCTTGCAATTTATAAC ] [-] EMBL CB665978 [ ATGCAACAATTAGAAGTGGAATTGCAAGACAGCTGGAAGCTTTTAAGTCAGGATTCAATGAGGTATTTCCATTAAGCATGCTCCAGGTCTTCTCAGAGGATGAGCTGGAGCGATTACTCTGCGGTGAACAAGATACGTGGGATTTTGCGAAACTTGTGGATCATATAAAGTTTGATCATGGNTACACTTCCAGCAGCCCTCCTGTCATTAATTTGTTGGAGGTTATACAGGAGTTTGAAGGCCATCAACGCAGAGCTTTCTTGCAATTTATAACAGGTTCACCTCGACTCCCACCGGGTGGGTTAGCTGCGCTAAATCCGAAGTTGACGGTTGTCCGAAAGCATAACAGCAACGAGGCTGATGATGACCTTCCGAGTGTGATGACTTGTGCTAATTATCTAAAGTTACCCCCCTATTCTTCCAAGGACAAGATGAGGGAGAAACTACTCTACGCGATTACGGAAGGTCAGGGGTCCTTCCACTTATCTTGACTTGAAACTGATAGCATCTAGCTGCGCATGCCATCACACGCAGTAGAAATGTGTGTTTTGTAAGTATCACGTAGGAAAACATGGTGTAAATGTGGGTGGTTCACTGCTTAACTTACCAAGACATATGATTCGGGTGGAGCTGATGTTAGGAAAGGGAAAAAACTGAGGTGGCGCATGCCCTTCCTTCTCTGTACATAGTGGTAGTTGCCTGTAGGTGTGCTCAAGTAGTCGCGAACATGGCGACTCTCAGCTTAGCTCGCTGCTGTTGATGCAAACCTTCTCTTTTGGTGTAAATATACGTGGCTGGTGAAAATCTTCAATACT] consensusID : consensus_7782#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 545 fasta sequence [GCTTTCTTGCAATTTATAACAGGCTCACCTCGACTCCCACCGGGTGGGTTAGCTGCGCTAAATCCGAAGTTGACGGTTGTCCGAAAGCAGCATAACAGCAACGAGGCTGATGATGACCTTCCGAGCGTGATGACTTGTGCTAATTATCTAAAGTTACCCCCCTATTCTTCCAAGGACAAGATGA-GGGAGAAACTACTCTACGCGATTACAGAAGGTCAGGGGTCCTTCCACTTATCTTGACTTGAAACTGATAACATCTAACTGCGCATGCCATCACACGCAGTAAAAATTTGTGTGTCTTGTAAAGTATCACGTACGAAAACATGGTGTAAATGTGGGTGGTTCACTGCTTAACTTACCATGACATATGATTCAGGTGGAGCTGATGTTAAGAAAGGGAAAAAACTGAAGTGGCACATGCCCTTCCTTCTCTGTACCTCAGCCACAACCACACTAATCACTAATGAATTCACAGCCACCTGCAAGTCACCATATGGTAAAAACTCCCAACACATTGAATCCATAACTTGAATATCCTATAATAG] [+] EMBL BI118805 [GCTTTCTTGCAATTTATAACAGGCTCACCTCGACTCCCACCGGGTGGGTTAGCTGCGCTAAATCCGAAGTTGACGGTTGTCCGAAAGCAGCATAACAGCAACGAGGCTGATGATGACCTTCCGAGCGTGATGACTTGTGCTAATTATCTAAAGTTACCCCCCTATTCTTCCAAGGACAAGATGA GGGAGAAACTACTCTACGCGATTACAGAAGGTCAGGGGTCCTTCCACTTATCTTGACTTGAAACTGATAACATCTAACTGCGCATGCCATCACACGCAGTAAAAATTTGTGTGTCTTGTAAAGTATCACGTACGAAAACATGGTGTAAATGTGGGTGGTTCACTGCTTAACTTACCATGACATATGATTCAGGTGGAGCTGATGTTAAGAAAGGGAAAAAACTGAAGTGGCACATGCCCTTCCTTCTCTGTACCTCAGCCACAACCACACTAATCACTAATGAATTCACAGCCACCTGCAAGTCACCATATGGTAAAAACTCCCAACACATTGAATCCATAACTTGAATATCCTATAATAG] [+] EMBL BI118798 [GCTTTCTTGCAATTTATAACAGGCTCACCTCGACTCCCACCGGGTGGGTTAGCTGCGCTAAATCCGAAGTTGACGGTTGTCCGAAAGCAGCATAACAGCAACGAGGCTGATGATGACCTTCCGAGCGTGATGACTTGTGCTAATTATCTAAAGTTACCCCCCTATTCTTCCAAGGACAAGATGAGGGGAGAAACTACTCTACGCGATTACGGAAGGTCAGGGGTCCTTCCACTTATCTTGACTTGAAACTGATAGCATCTAGCTGCGCATGCCATCACACGCAGTAGAAATTTGTGTGTTTTGTAAAGTATCACGTAGGAAAACATGGTGTAAATGTGGGTGG TCACTGCTTAACTTACCATGACATATGATTCGGGTGGAGCTGATGTTAGGAAAGGGAAAAAACTGAGGTGGCGCATGCCCTTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7782#0 TTCCTTGCAAACTTGACAGATCAAGTCCATCATATGACATATTGTTTATGCTAAAAGTTC 60 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 TAGAGGGGTTGAACCGATACTCTTTTCACCTCGTCTCTGATGAGAGAAACCGTGCTTTTG 120 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 TACATGGAAGCATAACTGACCTTGATGATCTGAAAGTTGATGTTTCTGTAGTTCCACAGC 180 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 AGGAGTTTGTCAGTGCTAAATTGACAGATAAACTGGAGCAACAGATGCATGATCCCTTGG 240 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 TTTTAAGGTCTCGTTGCCTGCCTTTATGGTGCACTGAACTGATGTCTGCATGTCCCTTCT 300 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 TGTTTTCTTTTGAGGCAAGATGGAAGTATTTCCAGCTGACAGCATTTGGTTCTTTGATCC 360 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 CACAACATGGGAATATGATGGATACAAGTGGCAGTGGTGTAATGACAGAAAGGGTGCCTT 420 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 CCTTCTCACGGAAAAAGTTCAAAGTTGATCGCGACAATATACTTGTTTCTGCTGCTAAAG 480 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 TGATGCAATCACATGCTCGGAGTAATGCAATGCTTGAAGTAGAATATGAAGAGGAAGTAG 540 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 GCACAGGCTTGGGTCCTACGATGGAATTCTATACATTGATAAGTCATGAGTTTCAGAAGT 600 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 CTGGTTTAGGCATGTGGAGAGGGGAGCTCTCCGGCGAAGCTGGCCTGGATAATGTTCATG 660 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 GTGGTTCTGTATTTGTGGTTGCCCCTAATGGACTTTTTCCTAAACCATGGTCCACCCATG 720 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 TGGATTGTTCTTCCTTCTCAGAAGTGAATAAACAGTTCCACCTCCTTGGTCAGGTCGTTG 780 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 CAAAGGCAGTTAAAGACAACAGAATTCTCGACATTCCATTTTCTAAAGCATTTTACAGGC 840 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 TTATACTAGGACAGGAACTTAATATATATGACATTCACTCATTTGATCCTGAACTAGCAA 900 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 TGACCCTTATGGAGTTTAAAGCACTTGCTGCTCGGAGAAAATATTTAGAATCAAGTTCAA 960 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 GTGGGGACTGCAAGAGTACATCTGATTTGTCTTATCGAGGTTGCAGGATTGAGGATCTTG 1020 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 CTATTGAGTTCGCTCTTCCAGGATATCCAGAATATGTTCTTTCTTTAGAAAATAGCTTGG 1080 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 ATAATGTAAGTGCTGACAATTTAGAACAGTATGTTTCTTTTGTTGTTGATGCAACAATTA 1140 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 GAAGTGGAATTGCAAGACAGCTGGAAGCTTTTAAGTCAGGATTCAATGAGGTATTTCCAT 1200 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 TAAGCATGCTCCAGGTCTTCTCAGAGGATGAGCTGGAGCGATTACTCTGCGGTGAACAAG 1260 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 ATACGTGGGATTTTGCGAAACTTGTGGATCATATAAAGTTTGATCATGGCTACACTTCCA 1320 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 GCAGCCCTCCTGTCATTAATTTGTTGGAGGTTATACAGGAGTTTGAAGGCCATCAACGCA 1380 consensus_7782#1 ------------------------------------------------------------ consensus_7782#0 GAGCTTTCTTGCAATTTATAACAGGTTCACCTCGACTCCCACCGGGTGGGTTAGCTGCGC 1440 consensus_7782#1 --GCTTTCTTGCAATTTATAACAGGCTCACCTCGACTCCCACCGGGTGGGTTAGCTGCGC 58 *********************** ********************************** consensus_7782#0 TAAATCCGAAGTTGACGGTTGTCCGAAAGCA---TAACAGCAACGAGGCTGATGATGACC 1497 consensus_7782#1 TAAATCCGAAGTTGACGGTTGTCCGAAAGCAGCATAACAGCAACGAGGCTGATGATGACC 118 ******************************* ************************** consensus_7782#0 TTCCGAGTGTGATGACTTGTGCTAATTATCTAAAGTTACCCCCCTATTCTTCCAAGGACA 1557 consensus_7782#1 TTCCGAGCGTGATGACTTGTGCTAATTATCTAAAGTTACCCCCCTATTCTTCCAAGGACA 178 ******* **************************************************** consensus_7782#0 AGATGAGGGAGAAACTACTCTACGCGATTACGGAAGGTCAGGGGTCCTTCCACTTATCTT 1617 consensus_7782#1 AGATGAGGGAGAAACTACTCTACGCGATTACAGAAGGTCAGGGGTCCTTCCACTTATCTT 238 ******************************* **************************** consensus_7782#0 GACTTGAAACTGATAGCATCTAGCTGCGCATGCCATCACACGCAGTAGAAAT--GTGTGT 1675 consensus_7782#1 GACTTGAAACTGATAACATCTAACTGCGCATGCCATCACACGCAGTAAAAATTTGTGTGT 298 *************** ****** ************************ **** ****** consensus_7782#0 TTTGTAA-GTATCACGTAGGAAAACATGGTGTAAATGTGGGTGGTTCACTGCTTAACTTA 1734 consensus_7782#1 CTTGTAAAGTATCACGTACGAAAACATGGTGTAAATGTGGGTGGTTCACTGCTTAACTTA 358 ****** ********** ***************************************** consensus_7782#0 CCAAGACATATGATTCGGGTGGAGCTGATGTTAGGAAAGGGAAAAAACTGAGGTGGCGCA 1794 consensus_7782#1 CCATGACATATGATTCAGGTGGAGCTGATGTTAAGAAAGGGAAAAAACTGAAGTGGCACA 418 *** ************ **************** ***************** ***** ** consensus_7782#0 TGCCCTTCCTTCTCTGTACAT-AGTGGTAGTTGCCTGTAGGTGTGCTCAAGTAGTCGCGA 1853 consensus_7782#1 TGCCCTTCCTTCTCTGTACCTCAGCCACAACCACACTAAT---CACTAATGAATTCACAG 475 ******************* * ** * * * ** * * * ** * consensus_7782#0 ACATG-GCGACTCTCAGCTTAGCTCGCTGCTGTTGATGCAAACCTTCTCTTTTGGTGTAA 1912 consensus_7782#1 CCACCTGCAAGTCACCATATGG-TAAAAACTCCCAACACA---TTGAATCCATAACTTGA 531 ** ** * ** * * * * ** * ** * * * * consensus_7782#0 ATATACGTGGCTGGTGAAAATCTTCAATACT 1943 consensus_7782#1 ATATCCTATAATAG----------------- 545 **** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||